Wall clock time and date at job start Mon Mar 30 2020 00:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48502 * 109.47496 * 269.99815 * 3 2 1 5 5 H 1.48494 * 109.47146 * 30.00156 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99805 * 3 2 1 7 7 C 1.37875 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 S 1.71198 * 119.99817 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 N 1.46896 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.47021 * 111.00009 * 293.63022 * 16 15 14 18 18 C 1.53094 * 109.26180 * 177.60964 * 17 16 15 19 19 O 1.43013 * 109.25636 * 56.84970 * 18 17 16 20 20 C 1.43017 * 113.73976 * 301.32536 * 19 18 17 21 21 C 1.47012 * 111.00206 * 169.99952 * 16 15 14 22 22 H 0.97010 * 119.99768 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 24 24 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 25 25 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 28 28 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 29 29 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 30 30 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 31 31 H 1.09000 * 109.50522 * 297.54572 * 17 16 15 32 32 H 1.09003 * 109.49929 * 57.67289 * 17 16 15 33 33 H 1.09008 * 109.50457 * 296.91799 * 18 17 16 34 34 H 1.08991 * 109.54163 * 176.80945 * 18 17 16 35 35 H 1.08998 * 109.51230 * 298.74195 * 20 19 18 36 36 H 1.09004 * 109.54214 * 178.62944 * 20 19 18 37 37 H 1.09001 * 109.50992 * 302.32241 * 21 16 15 38 38 H 1.09001 * 109.50907 * 62.40764 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 5.3248 -2.8216 -0.0001 12 16 6.4374 -1.5204 0.0006 13 7 5.7741 -4.0923 -0.0008 14 6 7.2144 -4.3600 0.0054 15 6 7.4522 -5.8714 0.0102 16 7 8.8964 -6.1398 0.0169 17 6 9.5202 -5.6984 -1.2390 18 6 11.0300 -5.9415 -1.1658 19 8 11.2724 -7.3253 -0.8980 20 6 10.6797 -7.7888 0.3183 21 6 9.1664 -7.5644 0.2600 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6808 0.8905 24 1 3.8752 -0.6797 -0.8895 25 1 3.3695 -3.3126 -0.0009 26 1 5.1437 -4.8296 -0.0008 27 1 7.6688 -3.9236 -0.8841 28 1 7.6622 -3.9190 0.8958 29 1 6.9977 -6.3078 0.8997 30 1 7.0044 -6.3126 -0.8803 31 1 9.1007 -6.2628 -2.0718 32 1 9.3294 -4.6354 -1.3861 33 1 11.4578 -5.3358 -0.3669 34 1 11.4897 -5.6686 -2.1156 35 1 11.0973 -7.2368 1.1603 36 1 10.8855 -8.8520 0.4421 37 1 8.7174 -7.8635 1.2072 38 1 8.7405 -8.1587 -0.5484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000244319400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:37 Heat of formation + Delta-G solvation = -23.590233 kcal Electronic energy + Delta-G solvation = -18532.520583 eV Core-core repulsion = 15536.238951 eV Total energy + Delta-G solvation = -2996.281631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.125 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99144 -38.54167 -36.57821 -34.88507 -32.66447 -31.58882 -30.25874 -28.08840 -26.21196 -24.45045 -23.20249 -22.74786 -21.87485 -20.75365 -18.42423 -17.18595 -16.61983 -16.42162 -16.40864 -15.87811 -15.42359 -15.18320 -14.78203 -14.70184 -14.47171 -13.89098 -13.71466 -13.45306 -12.75664 -12.48962 -12.36127 -12.30704 -11.76816 -11.56164 -11.15760 -11.04463 -10.89694 -10.64919 -10.56808 -10.05087 -9.98333 -9.66942 -8.89286 -8.84497 -8.51168 -7.36380 -6.91387 -6.30501 -4.36015 1.94887 2.42182 2.89042 3.27342 3.34104 3.46778 3.47633 3.59071 4.12920 4.29782 4.38462 4.53430 4.57017 4.72886 4.79031 4.90515 4.95583 5.05655 5.10915 5.17368 5.28550 5.39261 5.47782 5.59129 5.70188 5.81805 6.25553 6.43060 6.49738 6.51684 6.77395 6.94120 7.00723 7.23048 7.31296 7.89619 8.20696 8.63078 9.26878 10.80610 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.048534 B = 0.003068 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.779512 B = 9123.971583 C = 9531.779631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.083 3.917 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.223 3.777 10 N -0.647 5.647 11 C 0.559 3.441 12 S -0.675 6.675 13 N -0.702 5.702 14 C 0.134 3.866 15 C 0.044 3.956 16 N -0.530 5.530 17 C 0.011 3.989 18 C 0.063 3.937 19 O -0.388 6.388 20 C 0.064 3.936 21 C 0.018 3.982 22 H 0.270 0.730 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.395 0.605 26 H 0.392 0.608 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.387 -17.237 -0.352 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.122 4.122 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.175 1.175 7 C -0.594 4.594 8 H 0.096 0.904 9 C 0.102 3.898 10 N -0.270 5.270 11 C 0.196 3.804 12 S -0.551 6.551 13 N -0.335 5.335 14 C 0.009 3.991 15 C -0.085 4.085 16 N -0.255 5.255 17 C -0.117 4.117 18 C -0.013 4.013 19 O -0.306 6.306 20 C -0.013 4.013 21 C -0.110 4.110 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.231 0.769 26 H 0.228 0.772 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.288 -15.968 -0.089 24.278 hybrid contribution -1.586 -0.806 -0.505 1.849 sum 16.702 -16.774 -0.594 23.679 Atomic orbital electron populations 1.69869 1.06320 1.27757 1.48601 1.24722 0.94791 0.99299 0.93353 0.86833 0.80982 0.82778 0.79493 1.19596 1.20856 1.17507 1.21003 0.88150 0.95385 1.54869 0.90437 1.19979 0.95002 0.75609 0.99246 1.45613 1.02317 1.13041 1.66025 1.22091 0.88340 0.88748 0.81194 1.93223 1.49986 1.35995 1.75920 1.44676 1.09019 1.04536 1.75305 1.21439 0.78536 0.93904 1.05174 1.22271 0.88418 0.96146 1.01670 1.62033 1.11067 1.17736 1.34711 1.22946 0.95915 1.02546 0.90335 1.22691 0.93995 0.82537 1.02126 1.87985 1.75180 1.25938 1.41510 1.22659 0.91015 1.00191 0.87467 1.22803 0.97952 0.88211 1.02008 0.92034 0.93390 0.93886 0.76929 0.77214 0.89962 0.88963 0.89926 0.94040 0.93751 0.88506 0.91869 0.88227 0.92027 0.88424 0.89431 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.25 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.56 -14.73 9.83 -34.44 -0.34 -15.07 16 8 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 9 C 0.22 5.24 3.95 -5.19 -0.02 5.22 16 10 N -0.65 -12.18 5.55 -63.21 -0.35 -12.53 16 11 C 0.56 9.95 7.98 -86.92 -0.69 9.26 16 12 S -0.67 -14.86 27.77 -107.50 -2.99 -17.85 16 13 N -0.70 -8.81 5.56 -62.03 -0.34 -9.16 16 14 C 0.13 1.52 5.06 -4.04 -0.02 1.50 16 15 C 0.04 0.36 5.07 -3.83 -0.02 0.34 16 16 N -0.53 -4.58 4.73 -234.30 -1.11 -5.69 16 17 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 18 C 0.06 0.51 7.01 37.21 0.26 0.77 16 19 O -0.39 -3.65 10.83 -35.23 -0.38 -4.03 16 20 C 0.06 0.46 7.01 37.21 0.26 0.72 16 21 C 0.02 0.13 5.64 -3.71 -0.02 0.11 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.05 1.21 7.05 -51.93 -0.37 0.84 16 24 H 0.04 1.07 7.42 -51.93 -0.39 0.69 16 25 H 0.39 6.38 8.34 -40.82 -0.34 6.04 16 26 H 0.39 3.71 8.49 -40.82 -0.35 3.36 16 27 H 0.08 1.04 6.37 -51.93 -0.33 0.71 16 28 H 0.09 1.23 7.99 -51.93 -0.41 0.81 16 29 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 30 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.86 6.38 -51.93 -0.33 0.52 16 33 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -33.05 320.36 -10.84 -43.89 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.89 Total: 4.07 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -0.71 Total: 5.13 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -1.03 Total: -52.50 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.38 Total: -4.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: -14.86 SS G_CDS: -2.99 Total: -17.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.05 -10.84 -43.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244319400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.296 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds