Wall clock time and date at job start Mon Mar 30 2020 00:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48502 * 109.47496 * 269.99815 * 3 2 1 5 5 H 1.48494 * 109.47146 * 30.00156 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99805 * 3 2 1 7 7 C 1.37875 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 S 1.71198 * 119.99817 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 N 1.46896 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.47021 * 111.00009 * 293.63022 * 16 15 14 18 18 C 1.53094 * 109.26180 * 177.60964 * 17 16 15 19 19 O 1.43013 * 109.25636 * 56.84970 * 18 17 16 20 20 C 1.43017 * 113.73976 * 301.32536 * 19 18 17 21 21 C 1.47012 * 111.00206 * 169.99952 * 16 15 14 22 22 H 0.97010 * 119.99768 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 24 24 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 25 25 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 28 28 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 29 29 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 30 30 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 31 31 H 1.09000 * 109.50522 * 297.54572 * 17 16 15 32 32 H 1.09003 * 109.49929 * 57.67289 * 17 16 15 33 33 H 1.09008 * 109.50457 * 296.91799 * 18 17 16 34 34 H 1.08991 * 109.54163 * 176.80945 * 18 17 16 35 35 H 1.08998 * 109.51230 * 298.74195 * 20 19 18 36 36 H 1.09004 * 109.54214 * 178.62944 * 20 19 18 37 37 H 1.09001 * 109.50992 * 302.32241 * 21 16 15 38 38 H 1.09001 * 109.50907 * 62.40764 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 5.3248 -2.8216 -0.0001 12 16 6.4374 -1.5204 0.0006 13 7 5.7741 -4.0923 -0.0008 14 6 7.2144 -4.3600 0.0054 15 6 7.4522 -5.8714 0.0102 16 7 8.8964 -6.1398 0.0169 17 6 9.5202 -5.6984 -1.2390 18 6 11.0300 -5.9415 -1.1658 19 8 11.2724 -7.3253 -0.8980 20 6 10.6797 -7.7888 0.3183 21 6 9.1664 -7.5644 0.2600 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6808 0.8905 24 1 3.8752 -0.6797 -0.8895 25 1 3.3695 -3.3126 -0.0009 26 1 5.1437 -4.8296 -0.0008 27 1 7.6688 -3.9236 -0.8841 28 1 7.6622 -3.9190 0.8958 29 1 6.9977 -6.3078 0.8997 30 1 7.0044 -6.3126 -0.8803 31 1 9.1007 -6.2628 -2.0718 32 1 9.3294 -4.6354 -1.3861 33 1 11.4578 -5.3358 -0.3669 34 1 11.4897 -5.6686 -2.1156 35 1 11.0973 -7.2368 1.1603 36 1 10.8855 -8.8520 0.4421 37 1 8.7174 -7.8635 1.2072 38 1 8.7405 -8.1587 -0.5484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000244319400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:36 Heat of formation + Delta-G solvation = -49.172409 kcal Electronic energy + Delta-G solvation = -18533.629909 eV Core-core repulsion = 15536.238951 eV Total energy + Delta-G solvation = -2997.390958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.125 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68441 -39.86986 -37.56578 -36.14345 -34.62398 -32.19675 -31.39458 -29.65461 -27.15587 -25.10780 -24.63413 -24.29685 -23.07567 -21.39510 -19.99720 -18.49332 -18.20991 -17.41370 -17.18156 -16.71140 -16.55179 -16.22762 -16.03425 -15.87788 -15.43050 -15.31708 -15.03311 -14.61626 -14.40960 -13.59708 -13.31362 -13.12284 -12.98044 -12.79556 -12.39581 -12.29638 -12.26911 -11.94579 -11.86998 -11.75137 -11.50543 -10.91579 -10.69098 -9.98626 -9.48936 -9.07082 -8.66067 -8.43315 -6.51978 0.44563 0.93187 1.35438 1.38501 1.54131 1.58298 2.28432 2.56996 2.89475 2.93478 3.00258 3.64770 3.90576 3.94514 4.03727 4.19596 4.27322 4.32933 4.43146 4.57840 4.64265 4.72058 4.78532 4.82865 4.84821 4.88848 4.98787 4.99543 5.02526 5.18035 5.51158 5.82165 5.87562 5.97006 6.09748 6.17862 6.43850 6.58798 7.14637 8.70561 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.048534 B = 0.003068 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.779512 B = 9123.971583 C = 9531.779631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.035 3.965 3 Si 0.930 3.070 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.242 3.758 10 N -0.646 5.646 11 C 0.581 3.419 12 S -0.751 6.751 13 N -0.668 5.668 14 C 0.137 3.863 15 C 0.054 3.946 16 N -0.542 5.542 17 C 0.012 3.988 18 C 0.063 3.937 19 O -0.406 6.406 20 C 0.059 3.941 21 C 0.020 3.980 22 H 0.274 0.726 23 H 0.033 0.967 24 H 0.031 0.969 25 H 0.411 0.589 26 H 0.415 0.585 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.029 -18.860 -0.233 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.166 4.166 3 Si 0.754 3.246 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.080 0.920 9 C 0.119 3.881 10 N -0.271 5.271 11 C 0.214 3.786 12 S -0.629 6.629 13 N -0.300 5.300 14 C 0.013 3.987 15 C -0.074 4.074 16 N -0.268 5.268 17 C -0.116 4.116 18 C -0.014 4.014 19 O -0.325 6.325 20 C -0.018 4.018 21 C -0.107 4.107 22 H 0.083 0.917 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.250 0.750 26 H 0.255 0.745 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.945 -17.679 0.033 25.912 hybrid contribution -1.755 -0.474 -0.531 1.894 sum 17.190 -18.153 -0.499 25.005 Atomic orbital electron populations 1.69958 1.07673 1.28770 1.50204 1.25455 0.95416 1.02442 0.93302 0.85947 0.79605 0.79456 0.79617 1.19091 1.20041 1.17812 1.21217 0.89621 0.94747 1.53580 0.91992 1.19448 0.92958 0.77737 0.97961 1.45140 1.02961 1.11988 1.67039 1.21552 0.86992 0.89492 0.80539 1.93416 1.51491 1.39037 1.78939 1.44609 1.10338 1.03243 1.71822 1.21495 0.77000 0.96304 1.03918 1.22168 0.88719 0.93419 1.03087 1.62021 1.11070 1.18963 1.34725 1.22902 0.96231 1.02029 0.90401 1.22741 0.93825 0.82190 1.02649 1.87961 1.75643 1.26361 1.42517 1.22834 0.91000 1.01282 0.86643 1.22850 0.97980 0.87065 1.02832 0.91704 0.94888 0.95090 0.75049 0.74515 0.90963 0.90545 0.88161 0.92868 0.93840 0.89284 0.92216 0.87136 0.92173 0.86536 0.87795 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.12 13.96 21.45 0.30 -53.82 16 2 C 0.04 1.93 5.47 84.66 0.46 2.40 16 3 Si 0.93 43.53 27.47 68.60 1.88 45.41 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.25 -11.95 6.54 99.48 0.65 -11.29 16 7 C -0.55 -29.15 9.83 25.60 0.25 -28.90 16 8 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 9 C 0.24 11.23 3.95 85.63 0.34 11.57 16 10 N -0.65 -23.34 5.55 -353.90 -1.97 -25.31 16 11 C 0.58 19.76 7.98 179.05 1.43 21.19 16 12 S -0.75 -33.01 27.77 -56.49 -1.57 -34.58 16 13 N -0.67 -15.04 5.56 -350.18 -1.95 -16.99 16 14 C 0.14 2.85 5.06 86.38 0.44 3.28 16 15 C 0.05 0.75 5.07 86.30 0.44 1.18 16 16 N -0.54 -8.21 4.73 -895.20 -4.23 -12.44 16 17 C 0.01 0.20 5.44 86.31 0.47 0.66 16 18 C 0.06 0.96 7.01 72.01 0.50 1.46 16 19 O -0.41 -7.08 10.83 -148.98 -1.61 -8.69 16 20 C 0.06 0.73 7.01 72.02 0.50 1.24 16 21 C 0.02 0.24 5.64 86.32 0.49 0.73 16 22 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 23 H 0.03 1.65 7.05 -2.39 -0.02 1.64 16 24 H 0.03 1.53 7.42 -2.38 -0.02 1.51 16 25 H 0.41 12.39 8.34 -92.71 -0.77 11.62 16 26 H 0.42 6.26 8.49 -92.71 -0.79 5.47 16 27 H 0.07 1.74 6.37 -2.38 -0.02 1.72 16 28 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 29 H 0.10 1.08 8.04 -2.38 -0.02 1.06 16 30 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 1.52 6.38 -2.39 -0.02 1.51 16 33 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 38 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -71.15 320.36 -4.37 -75.52 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -0.55 Total: 16.08 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 5.32 Total: 14.81 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -7.84 Total: -108.55 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -1.61 Total: -8.69 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Atomic # 16 Polarization: -33.01 SS G_CDS: -1.57 Total: -34.58 kcal Total: -71.15 -4.37 -75.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244319400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.343 kcal (2) G-P(sol) polarization free energy of solvation -71.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds