Wall clock time and date at job start Mon Mar 30 2020 01:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40159 * 120.29781 * 2 1 4 4 C 1.35183 * 120.32141 * 180.02562 * 3 2 1 5 5 N 1.36246 * 120.70737 * 0.02562 * 4 3 2 6 6 N 1.40007 * 132.01746 * 180.02562 * 5 4 3 7 7 C 1.30737 * 109.60878 * 179.72373 * 6 5 4 8 8 C 1.40556 * 108.74299 * 0.39351 * 7 6 5 9 9 C 1.46563 * 126.58173 * 179.87817 * 8 7 6 10 10 O 1.21714 * 120.00207 * 179.68108 * 9 8 7 11 11 N 1.34781 * 120.00114 * 359.68964 * 9 8 7 12 12 C 1.46500 * 120.00238 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47086 * 34.99710 * 12 11 9 14 14 C 1.52995 * 109.46835 * 274.99456 * 12 11 9 15 15 C 1.50698 * 109.46975 * 154.99023 * 12 11 9 16 16 H 1.08003 * 120.00248 * 35.01088 * 15 12 11 17 17 C 1.37879 * 120.00061 * 215.00078 * 15 12 11 18 18 N 1.31514 * 120.00065 * 184.92370 * 17 15 12 19 19 Si 1.86799 * 120.00086 * 4.91820 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.83083 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.83377 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.83552 * 19 17 15 23 23 C 1.36581 * 120.07585 * 359.97438 * 5 4 3 24 24 C 1.36451 * 120.29241 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47301 * 269.97877 * 1 2 3 26 26 H 1.08999 * 109.47502 * 29.98214 * 1 2 3 27 27 H 1.09005 * 109.47330 * 149.98069 * 1 2 3 28 28 H 1.08001 * 119.83658 * 0.04030 * 3 2 1 29 29 H 1.07998 * 119.64717 * 180.02562 * 4 3 2 30 30 H 1.08005 * 125.63241 * 180.26373 * 7 6 5 31 31 H 0.97001 * 119.99924 * 359.97438 * 11 9 8 32 32 H 1.09002 * 109.47365 * 295.03446 * 14 12 11 33 33 H 1.09001 * 109.46944 * 175.03330 * 14 12 11 34 34 H 1.08998 * 109.47309 * 55.04126 * 14 12 11 35 35 H 0.96997 * 119.99915 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.37689 * 359.95792 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0016 6 7 5.6351 -0.2344 -0.0018 7 6 5.8243 -1.5280 0.0029 8 6 4.5727 -2.1676 -0.0026 9 6 4.3304 -3.6131 -0.0024 10 8 3.1903 -4.0390 -0.0017 11 7 5.3702 -4.4707 -0.0028 12 6 5.1280 -5.9155 -0.0032 13 1 4.2376 -6.1345 -0.5925 14 6 4.9201 -6.3981 1.4337 15 6 6.3148 -6.6236 -0.6043 16 1 7.3115 -6.2408 -0.4413 17 6 6.1282 -7.7601 -1.3623 18 7 7.1677 -8.4327 -1.8058 19 14 4.3990 -8.3447 -1.7591 20 1 3.8980 -7.6293 -2.9600 21 1 4.4193 -9.8054 -2.0256 22 1 3.5050 -8.0641 -0.6069 23 6 3.5959 -1.1528 -0.0016 24 6 2.1952 -1.1782 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6762 2.1467 0.0007 29 1 4.0997 2.1495 -0.0001 30 1 6.7840 -2.0236 0.0080 31 1 6.2789 -4.1312 -0.0036 32 1 5.8409 -6.2597 2.0003 33 1 4.6530 -7.4549 1.4269 34 1 4.1182 -5.8237 1.8974 35 1 7.0364 -9.2325 -2.3387 36 1 1.6662 -2.1198 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271148855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:06 Heat of formation + Delta-G solvation = 57.183397 kcal Electronic energy + Delta-G solvation = -20267.230675 eV Core-core repulsion = 17139.007700 eV Total energy + Delta-G solvation = -3128.222975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.14059 -38.67414 -37.59920 -34.77538 -33.63296 -32.28977 -31.37883 -30.27760 -28.92985 -27.10490 -25.25378 -23.89534 -22.69436 -22.00512 -20.44466 -19.46596 -18.04035 -16.88690 -16.77357 -15.91582 -15.81156 -15.29408 -15.12295 -14.64537 -14.01919 -13.90573 -13.65234 -13.40723 -13.07808 -12.79509 -12.46648 -12.32027 -12.08181 -11.95050 -11.62238 -11.36985 -11.05583 -10.87607 -10.74255 -10.51950 -10.32331 -9.83389 -9.41902 -9.15266 -9.11061 -8.65472 -8.06236 -7.55470 -6.19071 -4.22266 0.55774 0.92197 2.10681 2.33914 3.11963 3.30534 3.37737 3.45509 3.97217 4.09404 4.28623 4.36738 4.37125 4.53305 4.69633 4.96572 5.07117 5.21321 5.25257 5.30653 5.34232 5.51232 5.67096 5.71598 5.93823 6.16884 6.30405 6.36755 6.47476 6.60709 6.74046 6.75174 7.02071 7.27147 7.42192 7.47386 7.64315 8.22323 8.67678 8.82523 9.12460 9.43768 10.92755 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.004597 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.477445 B = 6089.147997 C = 6717.016955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.160 4.160 4 C 0.110 3.890 5 N -0.272 5.272 6 N -0.325 5.325 7 C 0.118 3.882 8 C -0.297 4.297 9 C 0.584 3.416 10 O -0.570 6.570 11 N -0.700 5.700 12 C 0.233 3.767 13 H 0.050 0.950 14 C -0.147 4.147 15 C -0.529 4.529 16 H 0.079 0.921 17 C 0.081 3.919 18 N -0.890 5.890 19 Si 0.874 3.126 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.260 1.260 23 C 0.158 3.842 24 C -0.103 4.103 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.155 0.845 29 H 0.170 0.830 30 H 0.200 0.800 31 H 0.391 0.609 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 19.613 4.055 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.059 4.059 3 C -0.181 4.181 4 C -0.017 4.017 5 N -0.037 5.037 6 N -0.146 5.146 7 C -0.062 4.062 8 C -0.312 4.312 9 C 0.371 3.629 10 O -0.451 6.451 11 N -0.348 5.348 12 C 0.131 3.869 13 H 0.068 0.932 14 C -0.206 4.206 15 C -0.567 4.567 16 H 0.097 0.903 17 C -0.123 4.123 18 N -0.527 5.527 19 Si 0.701 3.299 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.184 1.184 23 C 0.038 3.962 24 C -0.122 4.122 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.172 0.828 29 H 0.187 0.813 30 H 0.217 0.783 31 H 0.224 0.776 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.972 20.202 3.939 22.871 hybrid contribution -0.530 -0.948 -0.319 1.132 sum -10.502 19.253 3.620 22.228 Atomic orbital electron populations 1.20813 0.89631 1.03568 1.03041 1.20012 0.97264 0.92164 0.96509 1.20769 0.91851 0.99492 1.06027 1.21477 0.91997 0.88352 0.99831 1.46064 1.06434 1.05253 1.45960 1.77534 0.88015 1.17171 1.31888 1.24149 0.99066 0.90266 0.92711 1.20100 0.91141 0.94384 1.25560 1.16959 0.85516 0.83832 0.76613 1.90692 1.22095 1.79121 1.53242 1.46381 1.07755 1.08052 1.72575 1.19103 0.97993 0.76176 0.93649 0.93196 1.22215 0.99361 1.00165 0.98858 1.21029 0.93126 1.10260 1.32283 0.90317 1.24935 0.96974 0.95993 0.94429 1.69884 1.29870 1.17551 1.35376 0.86890 0.85277 0.77722 0.80006 1.19881 1.21273 1.18419 1.19321 0.93021 0.85671 0.98223 1.20788 0.90108 1.00194 1.01114 0.90356 0.90963 0.90601 0.82784 0.81320 0.78300 0.77607 0.93455 0.93000 0.95176 0.92300 0.82161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.03 36.00 0.36 -0.43 16 2 C -0.05 -0.54 5.89 -104.55 -0.62 -1.16 16 3 C -0.16 -1.30 9.67 -39.95 -0.39 -1.69 16 4 C 0.11 1.08 11.17 -16.68 -0.19 0.90 16 5 N -0.27 -3.85 3.86 -10.54 -0.04 -3.89 16 6 N -0.32 -4.92 12.57 30.75 0.39 -4.53 16 7 C 0.12 1.78 11.44 -17.14 -0.20 1.58 16 8 C -0.30 -5.24 6.17 -104.68 -0.65 -5.88 16 9 C 0.58 12.19 7.75 -12.90 -0.10 12.09 16 10 O -0.57 -13.44 15.37 5.18 0.08 -13.36 16 11 N -0.70 -14.75 5.06 -56.28 -0.28 -15.03 16 12 C 0.23 5.68 2.22 -69.09 -0.15 5.52 16 13 H 0.05 1.32 4.73 -51.93 -0.25 1.08 16 14 C -0.15 -3.30 9.47 37.15 0.35 -2.95 16 15 C -0.53 -14.37 9.05 -34.44 -0.31 -14.68 16 16 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 17 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 18 N -0.89 -26.41 13.96 55.43 0.77 -25.63 16 19 Si 0.87 21.82 26.99 -169.99 -4.59 17.24 16 20 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.26 -6.38 6.82 56.52 0.39 -6.00 16 23 C 0.16 2.53 6.76 -84.07 -0.57 1.96 16 24 C -0.10 -1.42 9.38 -39.53 -0.37 -1.79 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 27 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 29 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.20 2.36 7.46 -52.48 -0.39 1.97 16 31 H 0.39 7.18 7.51 -40.82 -0.31 6.88 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.16 2.40 7.12 -52.48 -0.37 2.02 16 LS Contribution 311.35 15.07 4.69 4.69 Total: -1.00 -34.28 311.35 -6.17 -40.45 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.27 Total: 4.42 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.92 Total: -4.34 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.83 Total: -49.09 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.59 Total: 17.24 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.28 -6.17 -40.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271148855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.629 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds