Wall clock time and date at job start Mon Mar 30 2020 01:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40159 * 120.29781 * 2 1 4 4 C 1.35183 * 120.32141 * 180.02562 * 3 2 1 5 5 N 1.36246 * 120.70737 * 0.02562 * 4 3 2 6 6 N 1.40007 * 132.01746 * 180.02562 * 5 4 3 7 7 C 1.30737 * 109.60878 * 179.72373 * 6 5 4 8 8 C 1.40556 * 108.74299 * 0.39351 * 7 6 5 9 9 C 1.46563 * 126.58173 * 179.87817 * 8 7 6 10 10 O 1.21714 * 120.00207 * 179.68108 * 9 8 7 11 11 N 1.34781 * 120.00114 * 359.68964 * 9 8 7 12 12 C 1.46500 * 120.00238 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47086 * 34.99710 * 12 11 9 14 14 C 1.52995 * 109.46835 * 274.99456 * 12 11 9 15 15 C 1.50698 * 109.46975 * 154.99023 * 12 11 9 16 16 H 1.08003 * 120.00248 * 35.01088 * 15 12 11 17 17 C 1.37879 * 120.00061 * 215.00078 * 15 12 11 18 18 N 1.31514 * 120.00065 * 184.92370 * 17 15 12 19 19 Si 1.86799 * 120.00086 * 4.91820 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.83083 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.83377 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.83552 * 19 17 15 23 23 C 1.36581 * 120.07585 * 359.97438 * 5 4 3 24 24 C 1.36451 * 120.29241 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47301 * 269.97877 * 1 2 3 26 26 H 1.08999 * 109.47502 * 29.98214 * 1 2 3 27 27 H 1.09005 * 109.47330 * 149.98069 * 1 2 3 28 28 H 1.08001 * 119.83658 * 0.04030 * 3 2 1 29 29 H 1.07998 * 119.64717 * 180.02562 * 4 3 2 30 30 H 1.08005 * 125.63241 * 180.26373 * 7 6 5 31 31 H 0.97001 * 119.99924 * 359.97438 * 11 9 8 32 32 H 1.09002 * 109.47365 * 295.03446 * 14 12 11 33 33 H 1.09001 * 109.46944 * 175.03330 * 14 12 11 34 34 H 1.08998 * 109.47309 * 55.04126 * 14 12 11 35 35 H 0.96997 * 119.99915 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.37689 * 359.95792 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0016 6 7 5.6351 -0.2344 -0.0018 7 6 5.8243 -1.5280 0.0029 8 6 4.5727 -2.1676 -0.0026 9 6 4.3304 -3.6131 -0.0024 10 8 3.1903 -4.0390 -0.0017 11 7 5.3702 -4.4707 -0.0028 12 6 5.1280 -5.9155 -0.0032 13 1 4.2376 -6.1345 -0.5925 14 6 4.9201 -6.3981 1.4337 15 6 6.3148 -6.6236 -0.6043 16 1 7.3115 -6.2408 -0.4413 17 6 6.1282 -7.7601 -1.3623 18 7 7.1677 -8.4327 -1.8058 19 14 4.3990 -8.3447 -1.7591 20 1 3.8980 -7.6293 -2.9600 21 1 4.4193 -9.8054 -2.0256 22 1 3.5050 -8.0641 -0.6069 23 6 3.5959 -1.1528 -0.0016 24 6 2.1952 -1.1782 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6762 2.1467 0.0007 29 1 4.0997 2.1495 -0.0001 30 1 6.7840 -2.0236 0.0080 31 1 6.2789 -4.1312 -0.0036 32 1 5.8409 -6.2597 2.0003 33 1 4.6530 -7.4549 1.4269 34 1 4.1182 -5.8237 1.8974 35 1 7.0364 -9.2325 -2.3387 36 1 1.6662 -2.1198 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271148855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:06 Heat of formation + Delta-G solvation = 33.285597 kcal Electronic energy + Delta-G solvation = -20268.266962 eV Core-core repulsion = 17139.007700 eV Total energy + Delta-G solvation = -3129.259262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.18958 -40.26320 -38.58976 -36.63748 -34.62669 -34.30335 -32.38133 -31.88659 -30.06024 -28.08004 -27.31063 -24.93498 -23.97120 -22.99919 -22.05282 -21.10469 -19.53849 -18.46979 -17.78192 -17.36324 -16.93948 -16.84172 -16.25315 -15.72777 -15.66586 -15.48298 -14.81434 -14.51563 -14.42336 -14.33078 -14.15375 -13.50573 -13.26297 -13.03623 -12.94468 -12.77373 -12.71065 -12.47875 -12.41152 -11.94670 -11.85589 -11.39072 -11.21478 -10.85199 -10.74138 -10.33553 -9.80331 -8.68643 -8.37732 -6.43563 -0.38863 -0.02271 1.10302 1.14297 1.30479 1.34075 1.45686 2.16759 2.28615 2.53583 2.64072 3.03820 3.23537 3.48247 3.68631 3.84608 4.06215 4.10323 4.35234 4.45751 4.49728 4.59447 4.76396 4.78322 4.83503 4.85303 4.93587 5.10909 5.14152 5.27542 5.35246 5.40220 5.47711 5.47980 5.77469 5.79726 6.15821 6.36078 6.60997 6.98556 7.22755 7.53407 8.77308 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.004597 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.477445 B = 6089.147997 C = 6717.016955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.021 4.021 3 C -0.143 4.143 4 C 0.102 3.898 5 N -0.275 5.275 6 N -0.340 5.340 7 C 0.127 3.873 8 C -0.349 4.349 9 C 0.585 3.415 10 O -0.606 6.606 11 N -0.702 5.702 12 C 0.237 3.763 13 H 0.029 0.971 14 C -0.140 4.140 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.034 3.966 18 N -0.930 5.930 19 Si 0.926 3.074 20 H -0.276 1.276 21 H -0.275 1.275 22 H -0.256 1.256 23 C 0.152 3.848 24 C -0.151 4.151 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.068 0.932 28 H 0.209 0.791 29 H 0.208 0.792 30 H 0.221 0.779 31 H 0.402 0.598 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.035 0.965 35 H 0.271 0.729 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 23.030 4.445 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.027 4.027 3 C -0.163 4.163 4 C -0.023 4.023 5 N -0.038 5.038 6 N -0.161 5.161 7 C -0.053 4.053 8 C -0.363 4.363 9 C 0.375 3.625 10 O -0.491 6.491 11 N -0.350 5.350 12 C 0.133 3.867 13 H 0.047 0.953 14 C -0.199 4.199 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.166 4.166 18 N -0.568 5.568 19 Si 0.751 3.249 20 H -0.202 1.202 21 H -0.200 1.200 22 H -0.180 1.180 23 C 0.031 3.969 24 C -0.171 4.171 25 H 0.113 0.887 26 H 0.123 0.877 27 H 0.087 0.913 28 H 0.226 0.774 29 H 0.224 0.776 30 H 0.237 0.763 31 H 0.237 0.763 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.929 23.651 4.340 26.842 hybrid contribution -0.063 -1.710 -0.415 1.761 sum -11.992 21.941 3.925 25.310 Atomic orbital electron populations 1.20980 0.87070 1.04875 1.04378 1.20547 0.99063 0.91493 0.91581 1.21436 0.91230 1.00608 1.03062 1.22470 0.93056 0.88289 0.98497 1.46328 1.06097 1.05906 1.45518 1.77454 0.88863 1.16857 1.32911 1.24420 0.99153 0.90269 0.91472 1.19775 0.93051 0.92735 1.30752 1.17327 0.84609 0.85202 0.75362 1.90648 1.23342 1.80061 1.55036 1.46099 1.08718 1.06871 1.73286 1.18874 0.95740 0.77886 0.94212 0.95266 1.22102 1.00097 0.99966 0.97688 1.21195 0.93200 1.10170 1.31829 0.92380 1.25587 1.00026 0.96372 0.94651 1.69975 1.31656 1.18422 1.36780 0.86058 0.81431 0.77745 0.79633 1.20196 1.20024 1.18016 1.19484 0.93739 0.86158 0.97502 1.20744 0.89582 1.01094 1.05709 0.88732 0.87673 0.91342 0.77433 0.77557 0.76314 0.76274 0.92383 0.93207 0.94619 0.92013 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.03 71.23 0.71 -0.45 16 2 C -0.02 -0.36 5.89 -19.82 -0.12 -0.47 16 3 C -0.14 -1.58 9.67 22.03 0.21 -1.37 16 4 C 0.10 1.61 11.17 83.30 0.93 2.54 16 5 N -0.27 -7.33 3.86 -187.27 -0.72 -8.05 16 6 N -0.34 -9.99 12.57 -56.62 -0.71 -10.70 16 7 C 0.13 3.86 11.44 85.42 0.98 4.83 16 8 C -0.35 -12.67 6.17 -19.90 -0.12 -12.79 16 9 C 0.59 25.43 7.75 86.41 0.67 26.10 16 10 O -0.61 -29.95 15.37 -4.39 -0.07 -30.02 16 11 N -0.70 -30.49 5.06 -450.18 -2.28 -32.77 16 12 C 0.24 11.77 2.22 44.24 0.10 11.87 16 13 H 0.03 1.59 4.73 -2.39 -0.01 1.58 16 14 C -0.14 -6.31 9.47 71.98 0.68 -5.63 16 15 C -0.53 -29.27 9.05 25.60 0.23 -29.04 16 16 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 17 C 0.03 1.96 5.47 84.66 0.46 2.42 16 18 N -0.93 -56.27 13.96 21.45 0.30 -55.97 16 19 Si 0.93 45.74 26.99 68.60 1.85 47.59 16 20 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.26 -12.38 6.82 99.48 0.68 -11.70 16 23 C 0.15 4.89 6.76 39.49 0.27 5.16 16 24 C -0.15 -4.18 9.38 22.30 0.21 -3.97 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.10 0.43 8.10 -2.39 -0.02 0.41 16 27 H 0.07 0.84 8.09 -2.38 -0.02 0.82 16 28 H 0.21 0.16 8.06 -2.91 -0.02 0.14 16 29 H 0.21 1.62 8.06 -2.91 -0.02 1.59 16 30 H 0.22 5.24 7.46 -2.91 -0.02 5.22 16 31 H 0.40 15.30 7.51 -92.71 -0.70 14.60 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.14 4.36 7.12 -2.91 -0.02 4.34 16 Total: -1.00 -78.00 311.35 3.97 -74.03 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.38 Total: 16.67 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 5.22 Total: -0.79 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -3.41 Total: -107.48 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.07 Total: -30.02 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.85 Total: 47.59 kcal Total: -78.00 3.97 -74.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271148855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.318 kcal (2) G-P(sol) polarization free energy of solvation -78.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds