Wall clock time and date at job start Mon Mar 30 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47052 * 2 1 4 4 H 1.08996 * 109.47283 * 305.00324 * 3 2 1 5 5 C 1.50699 * 109.47175 * 184.99624 * 3 2 1 6 6 H 1.07998 * 120.00162 * 239.99582 * 5 3 2 7 7 C 1.37879 * 119.99828 * 60.00164 * 5 3 2 8 8 N 1.31515 * 119.99762 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46919 * 60.00383 * 9 7 5 11 11 H 1.48498 * 109.47222 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47323 * 300.00281 * 9 7 5 13 13 N 1.46505 * 109.46868 * 64.99756 * 3 2 1 14 14 C 1.34768 * 120.00136 * 274.99990 * 13 3 2 15 15 O 1.21605 * 120.00131 * 0.02562 * 14 13 3 16 16 C 1.47410 * 120.00134 * 179.97438 * 14 13 3 17 17 C 1.39284 * 120.27729 * 0.02562 * 16 14 13 18 18 C 1.38241 * 120.34879 * 180.29621 * 17 16 14 19 19 C 1.38151 * 120.65097 * 359.42182 * 18 17 16 20 20 C 1.38699 * 120.17500 * 0.59193 * 19 18 17 21 21 N 1.38159 * 134.01504 * 179.70925 * 20 19 18 22 22 H 0.97006 * 126.42570 * 359.95143 * 21 20 19 23 23 C 1.35865 * 107.14792 * 179.97438 * 21 20 19 24 24 N 1.30291 * 110.02469 * 0.02562 * 23 21 20 25 25 C 1.34763 * 109.79648 * 359.97438 * 24 23 21 26 26 H 1.09003 * 109.46971 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47596 * 299.99540 * 1 2 3 28 28 H 1.09001 * 109.47478 * 59.99739 * 1 2 3 29 29 H 1.09000 * 109.47387 * 239.99948 * 2 1 3 30 30 H 1.09004 * 109.47032 * 119.99648 * 2 1 3 31 31 H 0.97004 * 119.99976 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99920 * 95.00407 * 13 3 2 33 33 H 1.08002 * 119.82174 * 0.02562 * 17 16 14 34 34 H 1.08001 * 119.66965 * 179.69406 * 18 17 16 35 35 H 1.08001 * 119.91177 * 180.30382 * 19 18 17 36 36 H 1.07999 * 124.98708 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 3.4061 0.3376 -2.1732 9 14 6.0049 0.8814 -1.3817 10 1 6.5974 0.1473 -0.2348 11 1 6.3978 0.2168 -2.6502 12 1 6.4994 2.2816 -1.3819 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3418 2.6318 0.4319 16 6 0.0447 3.3229 2.6267 17 6 0.9297 3.3631 3.7016 18 6 0.5629 3.9749 4.8857 19 6 -0.6791 4.5652 5.0183 20 6 -1.5795 4.5392 3.9637 21 7 -2.8628 5.0187 3.7850 22 1 -3.3940 5.5002 4.4385 23 6 -3.2415 4.6889 2.5226 24 7 -2.2814 4.0438 1.9229 25 6 -1.2281 3.9171 2.7540 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0602 -2.9502 32 1 2.2718 2.1232 1.9979 33 1 1.9059 2.9101 3.6108 34 1 1.2559 3.9954 5.7139 35 1 -0.9513 5.0442 5.9472 36 1 -4.1980 4.9266 2.0810 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273917508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:17 Heat of formation + Delta-G solvation = 36.989110 kcal Electronic energy + Delta-G solvation = -20623.084516 eV Core-core repulsion = 17493.985851 eV Total energy + Delta-G solvation = -3129.098665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.11200 -38.91309 -36.87183 -34.88990 -33.07548 -32.31954 -31.08623 -29.67317 -29.33945 -26.81816 -23.99740 -22.89389 -22.40540 -21.65066 -20.33881 -19.27693 -18.23188 -17.19469 -16.58734 -15.92638 -15.29218 -15.20985 -14.95491 -14.35917 -14.22038 -13.98008 -13.57466 -13.10527 -12.59291 -12.13104 -11.96539 -11.88226 -11.56437 -11.32682 -11.15446 -10.91407 -10.75600 -10.60520 -10.24409 -10.06076 -9.89756 -9.50643 -8.95335 -8.78003 -8.45228 -8.40226 -8.10414 -7.63017 -6.04039 -4.13198 0.69780 1.44400 2.84691 2.87988 3.30761 3.35891 3.37037 3.47112 4.12971 4.32844 4.37579 4.43963 4.70293 5.02182 5.03247 5.26906 5.30836 5.38111 5.40947 5.82170 5.95471 6.28071 6.40239 6.45476 6.51921 6.60292 6.80298 6.80965 7.17825 7.26260 7.33786 7.50322 7.59842 7.71890 7.85574 7.99176 8.02252 8.28244 8.80253 8.89138 9.30813 9.54562 11.01266 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028494 B = 0.004717 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.411495 B = 5934.000751 C = 6530.752982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.706 5.706 14 C 0.536 3.464 15 O -0.516 6.516 16 C -0.065 4.065 17 C -0.099 4.099 18 C -0.107 4.107 19 C -0.100 4.100 20 C 0.033 3.967 21 N -0.606 5.606 22 H 0.421 0.579 23 C 0.251 3.749 24 N -0.461 5.461 25 C 0.095 3.905 26 H 0.021 0.979 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.385 0.615 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 8.454 15.826 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.321 3.679 15 O -0.393 6.393 16 C -0.070 4.070 17 C -0.120 4.120 18 C -0.127 4.127 19 C -0.122 4.122 20 C -0.077 4.077 21 N -0.218 5.218 22 H 0.259 0.741 23 C -0.035 4.035 24 N -0.179 5.179 25 C -0.026 4.026 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.947 7.951 14.026 18.944 hybrid contribution 0.927 0.585 1.445 1.813 sum -9.020 8.536 15.470 19.838 Atomic orbital electron populations 1.21836 0.98259 0.97888 1.01443 1.21929 0.92671 0.99793 1.02128 1.18770 0.94053 0.89156 0.81020 0.93239 1.21203 0.90762 1.38928 1.06256 0.92180 1.24878 0.98469 0.94887 0.95412 1.69895 1.35121 1.37635 1.09295 0.86531 0.85044 0.78249 0.77383 1.20209 1.21197 1.20231 1.46444 1.14422 1.56190 1.18487 1.17942 0.83132 0.79961 0.86901 1.90813 1.50892 1.58379 1.39215 1.19709 0.91777 0.99744 0.95802 1.21248 0.99329 0.99262 0.92209 1.20799 0.95587 0.98417 0.97853 1.19986 0.93109 1.02608 0.96470 1.18872 0.87261 1.03254 0.98332 1.43194 1.13305 1.49870 1.15450 0.74061 1.25630 1.00359 0.96247 0.81314 1.70395 0.99596 1.17363 1.30516 1.18608 0.94087 1.00161 0.89762 0.96037 0.94186 0.93092 0.88365 0.95125 0.92579 0.78174 0.84587 0.84815 0.85980 0.76785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.51 37.15 0.32 -2.96 16 2 C -0.13 -3.20 5.45 -26.73 -0.15 -3.35 16 3 C 0.27 7.10 2.24 -69.08 -0.15 6.94 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.18 11.29 55.43 0.63 -24.56 16 9 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.71 -15.55 4.97 -56.01 -0.28 -15.83 16 14 C 0.54 11.93 6.33 -12.53 -0.08 11.85 16 15 O -0.52 -13.37 13.19 5.27 0.07 -13.30 16 16 C -0.07 -1.19 5.90 -104.71 -0.62 -1.81 16 17 C -0.10 -1.39 9.52 -39.19 -0.37 -1.76 16 18 C -0.11 -1.17 10.01 -39.61 -0.40 -1.57 16 19 C -0.10 -1.07 10.05 -39.44 -0.40 -1.47 16 20 C 0.03 0.42 7.30 -83.99 -0.61 -0.19 16 21 N -0.61 -5.75 6.24 -11.78 -0.07 -5.83 16 22 H 0.42 2.11 8.96 -40.82 -0.37 1.74 16 23 C 0.25 2.87 12.97 -89.79 -1.16 1.71 16 24 N -0.46 -8.18 10.51 -11.95 -0.13 -8.31 16 25 C 0.09 1.66 6.82 -84.66 -0.58 1.08 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.95 5.64 -51.93 -0.29 0.66 16 28 H 0.05 1.30 7.84 -51.93 -0.41 0.89 16 29 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.39 7.28 6.57 -40.82 -0.27 7.01 16 33 H 0.14 1.67 6.38 -52.49 -0.34 1.33 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.22 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -35.59 301.61 -8.88 -44.48 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.03 Total: 7.39 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -4.60 Total: -4.44 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.15 Total: -54.52 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.07 Total: -13.30 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.59 -8.88 -44.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273917508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.464 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds