Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47052 * 2 1 4 4 H 1.08996 * 109.47283 * 305.00324 * 3 2 1 5 5 C 1.50699 * 109.47175 * 184.99624 * 3 2 1 6 6 H 1.07998 * 120.00162 * 239.99582 * 5 3 2 7 7 C 1.37879 * 119.99828 * 60.00164 * 5 3 2 8 8 N 1.31515 * 119.99762 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46919 * 60.00383 * 9 7 5 11 11 H 1.48498 * 109.47222 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47323 * 300.00281 * 9 7 5 13 13 N 1.46505 * 109.46868 * 64.99756 * 3 2 1 14 14 C 1.34768 * 120.00136 * 274.99990 * 13 3 2 15 15 O 1.21605 * 120.00131 * 0.02562 * 14 13 3 16 16 C 1.47410 * 120.00134 * 179.97438 * 14 13 3 17 17 C 1.39284 * 120.27729 * 0.02562 * 16 14 13 18 18 C 1.38241 * 120.34879 * 180.29621 * 17 16 14 19 19 C 1.38151 * 120.65097 * 359.42182 * 18 17 16 20 20 C 1.38699 * 120.17500 * 0.59193 * 19 18 17 21 21 N 1.38159 * 134.01504 * 179.70925 * 20 19 18 22 22 H 0.97006 * 126.42570 * 359.95143 * 21 20 19 23 23 C 1.35865 * 107.14792 * 179.97438 * 21 20 19 24 24 N 1.30291 * 110.02469 * 0.02562 * 23 21 20 25 25 C 1.34763 * 109.79648 * 359.97438 * 24 23 21 26 26 H 1.09003 * 109.46971 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47596 * 299.99540 * 1 2 3 28 28 H 1.09001 * 109.47478 * 59.99739 * 1 2 3 29 29 H 1.09000 * 109.47387 * 239.99948 * 2 1 3 30 30 H 1.09004 * 109.47032 * 119.99648 * 2 1 3 31 31 H 0.97004 * 119.99976 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99920 * 95.00407 * 13 3 2 33 33 H 1.08002 * 119.82174 * 0.02562 * 17 16 14 34 34 H 1.08001 * 119.66965 * 179.69406 * 18 17 16 35 35 H 1.08001 * 119.91177 * 180.30382 * 19 18 17 36 36 H 1.07999 * 124.98708 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 3.4061 0.3376 -2.1732 9 14 6.0049 0.8814 -1.3817 10 1 6.5974 0.1473 -0.2348 11 1 6.3978 0.2168 -2.6502 12 1 6.4994 2.2816 -1.3819 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3418 2.6318 0.4319 16 6 0.0447 3.3229 2.6267 17 6 0.9297 3.3631 3.7016 18 6 0.5629 3.9749 4.8857 19 6 -0.6791 4.5652 5.0183 20 6 -1.5795 4.5392 3.9637 21 7 -2.8628 5.0187 3.7850 22 1 -3.3940 5.5002 4.4385 23 6 -3.2415 4.6889 2.5226 24 7 -2.2814 4.0438 1.9229 25 6 -1.2281 3.9171 2.7540 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0602 -2.9502 32 1 2.2718 2.1232 1.9979 33 1 1.9059 2.9101 3.6108 34 1 1.2559 3.9954 5.7139 35 1 -0.9513 5.0442 5.9472 36 1 -4.1980 4.9266 2.0810 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273917508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = 11.513394 kcal Electronic energy + Delta-G solvation = -20624.189226 eV Core-core repulsion = 17493.985851 eV Total energy + Delta-G solvation = -3130.203375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.07981 -40.57063 -37.96903 -36.82816 -34.29015 -34.09311 -32.91532 -30.97471 -30.31677 -28.80750 -25.44104 -24.60888 -23.35591 -22.92147 -21.79543 -21.14205 -19.62638 -18.32792 -18.00366 -17.36025 -17.10592 -16.41083 -16.19086 -15.94195 -15.83488 -15.17307 -14.85352 -14.57470 -14.41541 -13.84834 -13.50587 -13.17170 -12.99627 -12.87946 -12.81294 -12.65379 -12.58546 -12.16595 -12.04515 -11.68740 -11.56629 -11.06311 -11.00891 -10.53883 -10.38353 -9.61146 -9.40449 -9.09600 -8.12929 -6.31035 -0.35648 0.47161 1.46307 1.49259 1.56861 1.95157 2.06853 2.12118 2.38712 2.67797 3.05114 3.16333 3.45071 3.75859 4.06065 4.17356 4.36142 4.40038 4.47849 4.48693 4.56109 4.73451 4.82648 4.96605 5.08275 5.24545 5.33662 5.42167 5.45307 5.47022 5.58046 5.66365 5.80803 5.88414 5.98766 6.18449 6.57438 6.76524 7.03270 7.10398 7.36318 7.67171 8.92685 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028494 B = 0.004717 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.411495 B = 5934.000751 C = 6530.752982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.118 4.118 3 C 0.280 3.720 4 H -0.008 1.008 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.974 3.026 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.703 5.703 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.121 4.121 17 C -0.087 4.087 18 C -0.108 4.108 19 C -0.073 4.073 20 C 0.025 3.975 21 N -0.581 5.581 22 H 0.445 0.555 23 C 0.272 3.728 24 N -0.544 5.544 25 C 0.058 3.942 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.022 0.978 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.146 0.854 34 H 0.178 0.822 35 H 0.171 0.829 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.115 9.771 19.742 23.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.157 4.157 3 C 0.176 3.824 4 H 0.010 0.990 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.798 3.202 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.353 5.353 14 C 0.321 3.679 15 O -0.448 6.448 16 C -0.126 4.126 17 C -0.107 4.107 18 C -0.127 4.127 19 C -0.094 4.094 20 C -0.085 4.085 21 N -0.195 5.195 22 H 0.289 0.711 23 C -0.015 4.015 24 N -0.264 5.264 25 C -0.062 4.062 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.164 0.836 34 H 0.196 0.804 35 H 0.188 0.812 36 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.629 9.303 18.029 22.457 hybrid contribution 0.682 0.278 0.308 0.798 sum -8.947 9.581 18.337 22.541 Atomic orbital electron populations 1.21642 0.97361 0.98845 0.99913 1.21772 0.93341 0.99236 1.01332 1.18355 0.93813 0.89026 0.81158 0.98963 1.21543 0.91133 1.39079 1.06911 0.90872 1.25820 1.03583 0.94273 0.94878 1.70065 1.37250 1.38333 1.09831 0.85373 0.78734 0.78437 0.77621 1.18634 1.21204 1.19682 1.46177 1.15198 1.56332 1.17609 1.18682 0.82138 0.78986 0.88138 1.90761 1.52193 1.60335 1.41523 1.19474 0.94146 1.03845 0.95144 1.21498 0.98780 0.98306 0.92163 1.21275 0.96610 0.97258 0.97552 1.20597 0.91838 0.99919 0.97002 1.19096 0.88757 1.03204 0.97472 1.43101 1.12244 1.48828 1.15355 0.71110 1.26422 1.00358 0.93269 0.81424 1.70306 1.01617 1.21122 1.33309 1.18936 0.94081 1.01345 0.91885 0.93552 0.94506 0.95852 0.90788 0.93923 0.92611 0.76368 0.83642 0.80438 0.81189 0.72400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.51 71.98 0.61 -5.45 16 2 C -0.12 -6.26 5.45 30.59 0.17 -6.09 16 3 C 0.28 15.47 2.24 44.25 0.10 15.57 16 4 H -0.01 -0.50 7.58 -2.39 -0.02 -0.51 16 5 C -0.55 -30.27 8.73 25.60 0.22 -30.05 16 6 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -54.34 11.29 21.45 0.24 -54.10 16 9 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 N -0.70 -32.51 4.97 -449.39 -2.23 -34.75 16 14 C 0.53 25.27 6.33 86.66 0.55 25.82 16 15 O -0.57 -31.99 13.19 -4.05 -0.05 -32.05 16 16 C -0.12 -4.54 5.90 -19.92 -0.12 -4.66 16 17 C -0.09 -2.30 9.52 22.52 0.21 -2.09 16 18 C -0.11 -1.90 10.01 22.25 0.22 -1.68 16 19 C -0.07 -1.21 10.05 22.36 0.22 -0.98 16 20 C 0.03 0.60 7.30 38.81 0.28 0.88 16 21 N -0.58 -9.21 6.24 -191.17 -1.19 -10.40 16 22 H 0.45 2.47 8.96 -92.70 -0.83 1.64 16 23 C 0.27 5.80 12.97 180.06 2.34 8.14 16 24 N -0.54 -19.87 10.51 -191.72 -2.01 -21.89 16 25 C 0.06 2.07 6.82 39.93 0.27 2.34 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 1.85 5.64 -2.39 -0.01 1.84 16 28 H 0.02 1.25 7.84 -2.39 -0.02 1.23 16 29 H 0.07 4.31 5.95 -2.39 -0.01 4.29 16 30 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.40 15.52 6.57 -92.70 -0.61 14.91 16 33 H 0.15 3.38 6.38 -2.91 -0.02 3.36 16 34 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.26 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -86.14 301.61 2.00 -84.13 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.30 Total: 20.97 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.53 Total: 3.00 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.20 Total: -121.14 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -86.14 2.00 -84.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273917508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.648 kcal (2) G-P(sol) polarization free energy of solvation -86.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds