Wall clock time and date at job start Mon Mar 30 2020 01:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29938 * 126.28626 * 2 1 4 4 O 1.21303 * 110.25257 * 179.97438 * 3 2 1 5 5 C 1.33641 * 109.80859 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.55383 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47399 * 270.03189 * 6 5 4 8 8 H 1.09005 * 109.46896 * 304.99572 * 7 6 5 9 9 N 1.46500 * 109.47440 * 64.99565 * 7 6 5 10 10 C 1.36939 * 120.00064 * 205.00295 * 9 7 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 7 12 12 C 1.38811 * 120.00149 * 179.97438 * 10 9 7 13 13 N 1.31622 * 119.99685 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00162 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47176 * 59.99856 * 14 12 10 16 16 H 1.48494 * 109.47498 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47071 * 300.00054 * 14 12 10 18 18 C 1.50697 * 109.47265 * 184.99955 * 7 6 5 19 19 C 1.38240 * 120.00011 * 279.72218 * 18 7 6 20 20 C 1.38231 * 120.00320 * 179.80627 * 19 18 7 21 21 C 1.38234 * 119.99739 * 0.40124 * 20 19 18 22 22 C 1.38235 * 120.00278 * 359.85327 * 21 20 19 23 23 C 1.38232 * 120.00569 * 99.99408 * 18 7 6 24 24 N 1.31134 * 106.89776 * 359.97438 * 5 4 3 25 25 H 1.09003 * 109.47093 * 89.97683 * 1 2 3 26 26 H 1.09000 * 109.47044 * 209.97453 * 1 2 3 27 27 H 1.08995 * 109.46918 * 329.97733 * 1 2 3 28 28 H 1.09008 * 109.46524 * 30.02892 * 6 5 4 29 29 H 1.09001 * 109.47340 * 150.02303 * 6 5 4 30 30 H 0.96999 * 119.99940 * 24.99700 * 9 7 6 31 31 H 0.97002 * 119.99423 * 180.02562 * 13 12 10 32 32 H 1.08004 * 119.99788 * 0.02562 * 19 18 7 33 33 H 1.08006 * 119.99969 * 180.22735 * 20 19 18 34 34 H 1.08008 * 119.99839 * 179.83157 * 21 20 19 35 35 H 1.07997 * 120.00009 * 179.97438 * 22 21 20 36 36 H 1.08007 * 119.99657 * 359.97438 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7970 -1.4371 0.0003 7 6 5.2263 -1.7123 -1.4422 8 1 4.4053 -2.1846 -1.9818 9 7 5.5783 -0.4497 -2.0964 10 6 5.4967 -0.3384 -3.4588 11 1 5.1732 -1.1816 -4.0511 12 6 5.8297 0.8581 -4.0787 13 7 6.2235 1.8859 -3.3568 14 14 5.7177 1.0102 -5.9371 15 1 4.3200 0.7582 -6.3710 16 1 6.1250 2.3780 -6.3473 17 1 6.6196 0.0148 -6.5704 18 6 6.4220 -2.6295 -1.4441 19 6 7.6849 -2.1194 -1.2078 20 6 8.7812 -2.9613 -1.2056 21 6 8.6157 -4.3121 -1.4479 22 6 7.3536 -4.8215 -1.6894 23 6 6.2568 -3.9802 -1.6877 24 7 2.3030 -1.0841 0.0002 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5142 28 1 5.5841 -0.8857 0.5147 29 1 4.6205 -2.3823 0.5136 30 1 5.8692 0.3075 -1.5645 31 1 6.4559 2.7221 -3.7900 32 1 7.8145 -1.0635 -1.0214 33 1 9.7674 -2.5632 -1.0173 34 1 9.4727 -4.9695 -1.4488 35 1 7.2244 -5.8768 -1.8791 36 1 5.2706 -4.3782 -1.8762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277067855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:57 Heat of formation + Delta-G solvation = 101.215518 kcal Electronic energy + Delta-G solvation = -20574.503210 eV Core-core repulsion = 17448.189610 eV Total energy + Delta-G solvation = -3126.313599 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.07545 -38.95567 -36.01211 -35.49628 -33.16735 -31.94552 -30.43221 -29.60676 -29.15924 -28.35450 -24.52884 -23.34419 -22.73087 -21.96759 -21.09342 -19.89735 -17.65388 -17.34362 -16.81212 -16.40132 -15.22635 -14.95879 -14.41543 -14.18668 -13.84715 -13.56417 -13.38385 -13.29198 -12.93047 -12.87582 -12.47438 -12.43821 -12.03758 -11.72297 -11.24105 -11.02282 -10.91033 -10.82195 -10.69864 -10.59218 -10.48531 -10.16906 -9.75851 -9.44698 -9.03015 -8.43308 -8.21479 -7.09792 -5.81702 -3.13120 1.61140 1.86219 1.90930 2.62421 3.31361 3.41998 3.46804 3.47172 3.99636 4.27563 4.41330 4.54447 5.13680 5.20743 5.34193 5.39246 5.44662 5.47830 5.49594 5.57838 5.61165 5.62274 5.72573 5.90781 5.99933 6.07042 6.18759 6.24337 6.34099 6.42505 6.48130 6.60938 6.91208 6.99393 7.26040 7.50537 7.66822 8.33833 8.63237 9.46789 9.95188 10.31309 11.39624 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.011006 B = 0.007824 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.462088 B = 3577.697197 C = 5433.609187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.155 3.845 3 N -0.387 5.387 4 O 0.094 5.906 5 C 0.212 3.788 6 C -0.033 4.033 7 C 0.214 3.786 8 H 0.068 0.932 9 N -0.714 5.714 10 C -0.244 4.244 11 H 0.069 0.931 12 C -0.004 4.004 13 N -0.926 5.926 14 Si 0.904 3.096 15 H -0.286 1.286 16 H -0.290 1.290 17 H -0.285 1.285 18 C -0.083 4.083 19 C -0.083 4.083 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.119 4.119 24 N -0.496 5.496 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.387 0.613 31 H 0.257 0.743 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -9.429 8.636 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.118 4.118 3 N -0.095 5.095 4 O 0.035 5.965 5 C -0.008 4.008 6 C -0.073 4.073 7 C 0.102 3.898 8 H 0.085 0.915 9 N -0.355 5.355 10 C -0.375 4.375 11 H 0.087 0.913 12 C -0.201 4.201 13 N -0.573 5.573 14 Si 0.735 3.265 15 H -0.213 1.213 16 H -0.216 1.216 17 H -0.212 1.212 18 C -0.086 4.086 19 C -0.102 4.102 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.138 4.138 24 N -0.231 5.231 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.222 0.778 31 H 0.067 0.933 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.260 -8.861 8.447 12.669 hybrid contribution 0.353 0.331 -1.171 1.267 sum -2.906 -8.531 7.276 11.583 Atomic orbital electron populations 1.20035 0.83605 1.03934 1.03966 1.25745 1.00282 0.84039 1.01740 1.74593 0.89675 1.24117 1.21148 1.85334 1.21744 1.24663 1.64715 1.28507 0.96511 0.82181 0.93613 1.20658 0.88151 0.97776 1.00730 1.19193 0.92933 0.88423 0.89227 0.91454 1.42446 1.79871 1.08302 1.04875 1.19085 1.38662 0.97036 0.82737 0.91259 1.24708 1.01621 0.96042 0.97714 1.69641 1.50796 1.02612 1.34202 0.86320 0.77750 0.76768 0.85652 1.21311 1.21620 1.21158 1.20983 0.96846 0.93769 0.97031 1.21025 0.91818 0.99886 0.97425 1.21108 0.98599 0.93696 1.01197 1.20992 0.96873 0.95507 1.01843 1.20986 0.93011 0.99109 1.01681 1.21028 0.98477 0.93359 1.00915 1.71809 0.99760 1.29443 1.22059 0.89686 0.89506 0.89981 0.88087 0.87211 0.77790 0.93337 0.85699 0.86832 0.87114 0.86993 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 36.01 0.38 -0.31 16 2 C 0.15 2.68 8.22 -156.38 -1.28 1.40 16 3 N -0.39 -7.62 12.16 30.90 0.38 -7.25 16 4 O 0.09 1.89 11.31 18.11 0.20 2.10 16 5 C 0.21 3.78 7.50 -13.05 -0.10 3.68 16 6 C -0.03 -0.50 5.36 -27.88 -0.15 -0.65 16 7 C 0.21 3.94 2.48 -69.09 -0.17 3.77 16 8 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 9 N -0.71 -16.57 4.06 -54.55 -0.22 -16.79 16 10 C -0.24 -6.55 9.92 -15.06 -0.15 -6.70 16 11 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 12 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 13 N -0.93 -27.19 13.06 55.49 0.72 -26.46 16 14 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 C -0.08 -1.42 4.92 -104.63 -0.52 -1.93 16 19 C -0.08 -1.43 9.33 -39.58 -0.37 -1.80 16 20 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 21 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 22 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 23 C -0.12 -1.83 9.67 -39.59 -0.38 -2.21 16 24 N -0.50 -8.85 11.55 -9.87 -0.11 -8.97 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 1.39 8.14 -51.92 -0.42 0.96 16 29 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.39 9.51 7.80 -40.82 -0.32 9.19 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.13 2.27 7.71 -52.48 -0.40 1.87 16 33 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 34 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.59 8.04 -52.48 -0.42 1.17 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -31.54 319.06 -7.76 -39.30 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.49 Total: 7.62 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -4.03 Total: -11.78 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.76 Total: -59.47 kcal Atomic # 8 Polarization: 1.89 SS G_CDS: 0.20 Total: 2.10 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.54 -7.76 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277067855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.518 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds