Wall clock time and date at job start Mon Mar 30 2020 01:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29938 * 126.28626 * 2 1 4 4 O 1.21303 * 110.25257 * 179.97438 * 3 2 1 5 5 C 1.33641 * 109.80859 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.55383 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47399 * 270.03189 * 6 5 4 8 8 H 1.09005 * 109.46896 * 304.99572 * 7 6 5 9 9 N 1.46500 * 109.47440 * 64.99565 * 7 6 5 10 10 C 1.36939 * 120.00064 * 205.00295 * 9 7 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 7 12 12 C 1.38811 * 120.00149 * 179.97438 * 10 9 7 13 13 N 1.31622 * 119.99685 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00162 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47176 * 59.99856 * 14 12 10 16 16 H 1.48494 * 109.47498 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47071 * 300.00054 * 14 12 10 18 18 C 1.50697 * 109.47265 * 184.99955 * 7 6 5 19 19 C 1.38240 * 120.00011 * 279.72218 * 18 7 6 20 20 C 1.38231 * 120.00320 * 179.80627 * 19 18 7 21 21 C 1.38234 * 119.99739 * 0.40124 * 20 19 18 22 22 C 1.38235 * 120.00278 * 359.85327 * 21 20 19 23 23 C 1.38232 * 120.00569 * 99.99408 * 18 7 6 24 24 N 1.31134 * 106.89776 * 359.97438 * 5 4 3 25 25 H 1.09003 * 109.47093 * 89.97683 * 1 2 3 26 26 H 1.09000 * 109.47044 * 209.97453 * 1 2 3 27 27 H 1.08995 * 109.46918 * 329.97733 * 1 2 3 28 28 H 1.09008 * 109.46524 * 30.02892 * 6 5 4 29 29 H 1.09001 * 109.47340 * 150.02303 * 6 5 4 30 30 H 0.96999 * 119.99940 * 24.99700 * 9 7 6 31 31 H 0.97002 * 119.99423 * 180.02562 * 13 12 10 32 32 H 1.08004 * 119.99788 * 0.02562 * 19 18 7 33 33 H 1.08006 * 119.99969 * 180.22735 * 20 19 18 34 34 H 1.08008 * 119.99839 * 179.83157 * 21 20 19 35 35 H 1.07997 * 120.00009 * 179.97438 * 22 21 20 36 36 H 1.08007 * 119.99657 * 359.97438 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7970 -1.4371 0.0003 7 6 5.2263 -1.7123 -1.4422 8 1 4.4053 -2.1846 -1.9818 9 7 5.5783 -0.4497 -2.0964 10 6 5.4967 -0.3384 -3.4588 11 1 5.1732 -1.1816 -4.0511 12 6 5.8297 0.8581 -4.0787 13 7 6.2235 1.8859 -3.3568 14 14 5.7177 1.0102 -5.9371 15 1 4.3200 0.7582 -6.3710 16 1 6.1250 2.3780 -6.3473 17 1 6.6196 0.0148 -6.5704 18 6 6.4220 -2.6295 -1.4441 19 6 7.6849 -2.1194 -1.2078 20 6 8.7812 -2.9613 -1.2056 21 6 8.6157 -4.3121 -1.4479 22 6 7.3536 -4.8215 -1.6894 23 6 6.2568 -3.9802 -1.6877 24 7 2.3030 -1.0841 0.0002 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5142 28 1 5.5841 -0.8857 0.5147 29 1 4.6205 -2.3823 0.5136 30 1 5.8692 0.3075 -1.5645 31 1 6.4559 2.7221 -3.7900 32 1 7.8145 -1.0635 -1.0214 33 1 9.7674 -2.5632 -1.0173 34 1 9.4727 -4.9695 -1.4488 35 1 7.2244 -5.8768 -1.8791 36 1 5.2706 -4.3782 -1.8762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277067855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:57 Heat of formation + Delta-G solvation = 81.234568 kcal Electronic energy + Delta-G solvation = -20575.369649 eV Core-core repulsion = 17448.189610 eV Total energy + Delta-G solvation = -3127.180038 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.47897 -40.22030 -37.46624 -36.89895 -34.86650 -33.52163 -31.65014 -31.16395 -30.41096 -29.70050 -26.24996 -24.95367 -24.12105 -23.19841 -22.39225 -21.26547 -19.35240 -18.99150 -18.28132 -17.64911 -16.82674 -16.33088 -15.86854 -15.68174 -15.28921 -15.10750 -14.70990 -14.42461 -14.21238 -14.04636 -13.90832 -13.56085 -13.30738 -13.15189 -12.88428 -12.79515 -12.56348 -12.27802 -12.19106 -12.03475 -11.98128 -11.82511 -11.58078 -11.04394 -10.80136 -9.62017 -9.48904 -9.03142 -7.94417 -5.23178 0.20719 0.64936 0.71079 1.27248 1.43318 1.44545 1.50435 1.96555 2.52782 2.74367 3.06809 3.17842 3.39153 3.79719 3.91675 4.07905 4.23438 4.28178 4.32139 4.41018 4.47498 4.55525 4.58251 4.70805 4.74065 4.86601 4.89281 4.97105 5.03858 5.14457 5.29396 5.36775 5.49578 5.75167 5.79857 5.99066 6.25357 6.32413 7.22198 7.34043 8.03155 8.28297 9.27314 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.011006 B = 0.007824 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.462088 B = 3577.697197 C = 5433.609187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.157 3.843 3 N -0.419 5.419 4 O 0.062 5.938 5 C 0.209 3.791 6 C -0.025 4.025 7 C 0.218 3.782 8 H 0.054 0.946 9 N -0.722 5.722 10 C -0.234 4.234 11 H 0.068 0.932 12 C -0.064 4.064 13 N -0.959 5.959 14 Si 0.959 3.041 15 H -0.284 1.284 16 H -0.296 1.296 17 H -0.279 1.279 18 C -0.098 4.098 19 C -0.105 4.105 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.125 4.125 24 N -0.504 5.504 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.143 0.857 30 H 0.377 0.623 31 H 0.249 0.751 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 -12.093 8.762 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.116 4.116 3 N -0.132 5.132 4 O 0.009 5.991 5 C -0.010 4.010 6 C -0.065 4.065 7 C 0.108 3.892 8 H 0.072 0.928 9 N -0.362 5.362 10 C -0.366 4.366 11 H 0.086 0.914 12 C -0.257 4.257 13 N -0.609 5.609 14 Si 0.789 3.211 15 H -0.211 1.211 16 H -0.222 1.222 17 H -0.205 1.205 18 C -0.101 4.101 19 C -0.123 4.123 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.144 4.144 24 N -0.239 5.239 25 H 0.113 0.887 26 H 0.128 0.872 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.161 0.839 30 H 0.211 0.789 31 H 0.058 0.942 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.435 -11.589 8.588 14.827 hybrid contribution 0.394 0.997 -1.152 1.574 sum -3.042 -10.592 7.435 13.294 Atomic orbital electron populations 1.20323 0.80098 1.05942 1.05177 1.26717 1.02258 0.83282 0.99322 1.74592 0.89826 1.25438 1.23352 1.85295 1.22308 1.25721 1.65767 1.29042 0.97460 0.81785 0.92741 1.20755 0.87486 0.99109 0.99125 1.19242 0.93069 0.86582 0.90304 0.92778 1.42509 1.80014 1.09925 1.03780 1.19355 1.36286 0.96488 0.84472 0.91418 1.25368 1.02939 0.96216 1.01223 1.69783 1.52997 1.02811 1.35279 0.85434 0.77652 0.76337 0.81684 1.21101 1.22203 1.20494 1.20713 0.95833 0.94469 0.99064 1.20973 0.92851 0.99294 0.99203 1.21347 0.98664 0.94369 1.00882 1.21393 0.98119 0.95190 1.00054 1.21375 0.92390 1.00531 1.00091 1.21240 0.99944 0.92657 1.00563 1.71848 0.99806 1.29699 1.22552 0.88658 0.87175 0.88322 0.86916 0.83906 0.78940 0.94166 0.87885 0.85269 0.83949 0.83792 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.27 10.51 71.24 0.75 -0.53 16 2 C 0.16 5.35 8.22 138.47 1.14 6.49 16 3 N -0.42 -16.74 12.16 -60.33 -0.73 -17.47 16 4 O 0.06 2.56 11.31 74.85 0.85 3.41 16 5 C 0.21 7.51 7.50 88.38 0.66 8.17 16 6 C -0.03 -0.76 5.36 29.85 0.16 -0.60 16 7 C 0.22 8.02 2.48 44.24 0.11 8.13 16 8 H 0.05 2.12 7.94 -2.38 -0.02 2.10 16 9 N -0.72 -34.31 4.06 -326.50 -1.33 -35.63 16 10 C -0.23 -12.75 9.92 84.03 0.83 -11.92 16 11 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 12 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 13 N -0.96 -58.10 13.06 21.65 0.28 -57.81 16 14 Si 0.96 46.81 29.55 68.60 2.03 48.84 16 15 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 17 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 18 C -0.10 -3.27 4.92 -19.87 -0.10 -3.37 16 19 C -0.10 -3.58 9.33 22.27 0.21 -3.37 16 20 C -0.13 -3.84 10.05 22.27 0.22 -3.62 16 21 C -0.13 -3.16 10.05 22.27 0.22 -2.93 16 22 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 23 C -0.13 -3.55 9.67 22.27 0.22 -3.34 16 24 N -0.50 -17.65 11.55 -303.21 -3.50 -21.15 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 29 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.38 19.31 7.80 -92.71 -0.72 18.59 16 31 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.10 3.90 7.71 -2.91 -0.02 3.88 16 33 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 35 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.13 3.23 8.04 -2.91 -0.02 3.21 16 Total: -1.00 -69.23 319.06 3.08 -66.15 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.37 Total: 26.59 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.12 Total: -12.92 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -5.28 Total: -132.07 kcal Atomic # 8 Polarization: 2.56 SS G_CDS: 0.85 Total: 3.41 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -69.23 3.08 -66.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277067855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.381 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds