Wall clock time and date at job start Mon Mar 30 2020 01:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00329 * 64.73174 * 5 3 2 8 8 N 1.31514 * 120.00396 * 187.25917 * 7 5 3 9 9 Si 1.86806 * 119.99749 * 7.26776 * 7 5 3 10 10 H 1.48507 * 109.46731 * 269.99746 * 9 7 5 11 11 H 1.48501 * 109.47091 * 29.99201 * 9 7 5 12 12 H 1.48493 * 109.47250 * 149.99769 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21597 * 120.00199 * 359.97438 * 14 13 3 16 16 C 1.47527 * 119.99766 * 180.02562 * 14 13 3 17 17 C 1.46499 * 120.16672 * 359.71587 * 16 14 13 18 18 C 1.35531 * 119.04617 * 179.72462 * 17 16 14 19 19 C 1.41232 * 119.42565 * 0.60706 * 18 17 16 20 20 C 1.37908 * 132.97183 * 179.68470 * 19 18 17 21 21 N 1.33450 * 107.66203 * 179.97438 * 20 19 18 22 22 C 1.30752 * 109.93368 * 359.97438 * 21 20 19 23 23 N 1.35921 * 109.20887 * 0.02562 * 22 21 20 24 24 C 1.36318 * 120.16384 * 179.97438 * 16 14 13 25 25 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 26 26 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 27 27 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 29 29 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 30 30 H 0.96997 * 119.99418 * 354.94858 * 8 7 5 31 31 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 32 32 H 1.08008 * 120.47443 * 0.02974 * 17 16 14 33 33 H 1.08008 * 120.28742 * 180.27310 * 18 17 16 34 34 H 1.08008 * 126.16809 * 359.95881 * 20 19 18 35 35 H 1.07998 * 125.39313 * 179.97438 * 22 21 20 36 36 H 1.07994 * 119.75129 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9700 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3383 2.6316 0.4503 16 6 0.0627 3.3183 2.6450 17 6 1.0009 3.3516 3.7697 18 6 0.6289 3.9663 4.9189 19 6 -0.6550 4.5476 5.0107 20 6 -1.3122 5.2208 6.0190 21 7 -2.5202 5.5559 5.5617 22 6 -2.6632 5.1368 4.3315 23 7 -1.5272 4.5010 3.9408 24 6 -1.1666 3.8929 2.7745 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.9924 1.1426 -0.6139 31 1 2.2853 2.1184 1.9978 32 1 1.9768 2.8972 3.6826 33 1 1.3064 4.0066 5.7591 34 1 -0.9199 5.4375 7.0018 35 1 -3.5446 5.2735 3.7226 36 1 -1.8607 3.8658 1.9475 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286081473.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:02 Heat of formation + Delta-G solvation = 27.311300 kcal Electronic energy + Delta-G solvation = -20447.200420 eV Core-core repulsion = 17317.682093 eV Total energy + Delta-G solvation = -3129.518327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.74623 -40.99856 -38.06175 -37.05324 -34.73179 -34.31098 -33.32959 -31.77925 -29.21021 -29.13896 -25.65136 -24.16850 -23.97181 -22.88781 -22.31434 -21.37337 -20.02745 -19.05821 -18.06365 -17.57408 -17.26812 -16.96166 -16.48145 -15.98685 -15.63371 -15.50315 -15.01958 -14.53845 -14.49418 -14.43610 -14.12096 -13.97956 -13.72238 -12.86835 -12.73485 -12.67184 -12.48973 -12.29752 -11.79792 -11.71736 -11.51886 -11.41210 -11.06582 -10.91653 -10.66553 -10.39144 -9.86663 -8.79103 -8.61020 -6.47770 -0.44009 -0.00741 1.40429 1.42141 1.51676 1.65021 1.68387 2.08162 2.38696 2.41591 2.52937 3.03009 3.38177 3.55836 3.64478 3.78212 3.83418 3.90784 4.28532 4.36586 4.40294 4.50807 4.52756 4.76163 4.84752 4.90799 5.06677 5.11158 5.16264 5.26955 5.41885 5.52522 5.52790 5.58078 5.63333 5.99248 6.04286 6.49871 6.72794 6.77399 7.22875 7.33416 8.61062 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035867 B = 0.004310 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.469260 B = 6494.317224 C = 6933.125568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 C 0.247 3.753 4 H 0.030 0.970 5 C -0.606 4.606 6 H 0.042 0.958 7 C -0.008 4.008 8 N -0.935 5.935 9 Si 1.077 2.923 10 H -0.257 1.257 11 H -0.263 1.263 12 H -0.288 1.288 13 N -0.691 5.691 14 C 0.558 3.442 15 O -0.574 6.574 16 C -0.159 4.159 17 C -0.114 4.114 18 C -0.068 4.068 19 C -0.016 4.016 20 C -0.023 4.023 21 N -0.482 5.482 22 C 0.153 3.847 23 N -0.384 5.384 24 C 0.127 3.873 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.258 0.742 31 H 0.403 0.597 32 H 0.154 0.846 33 H 0.184 0.816 34 H 0.206 0.794 35 H 0.245 0.755 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 5.021 12.500 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.174 4.174 3 C 0.142 3.858 4 H 0.048 0.952 5 C -0.644 4.644 6 H 0.061 0.939 7 C -0.208 4.208 8 N -0.570 5.570 9 Si 0.901 3.099 10 H -0.182 1.182 11 H -0.188 1.188 12 H -0.215 1.215 13 N -0.339 5.339 14 C 0.345 3.655 15 O -0.456 6.456 16 C -0.165 4.165 17 C -0.134 4.134 18 C -0.087 4.087 19 C -0.123 4.123 20 C -0.175 4.175 21 N -0.195 5.195 22 C -0.122 4.122 23 N -0.056 5.056 24 C 0.004 3.996 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.239 0.761 32 H 0.172 0.828 33 H 0.201 0.799 34 H 0.223 0.777 35 H 0.261 0.739 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.018 4.807 10.719 18.289 hybrid contribution 1.433 0.274 1.279 1.941 sum -12.584 5.081 11.998 18.114 Atomic orbital electron populations 1.21790 0.95257 1.00670 1.01604 1.22167 0.95659 0.98171 1.01424 1.18982 0.93638 0.89873 0.83292 0.95237 1.22355 0.91454 1.46722 1.03912 0.93932 1.26812 0.97654 0.93583 1.02744 1.70936 1.05418 1.44644 1.36048 0.83581 0.74484 0.78579 0.73289 1.18233 1.18764 1.21501 1.45960 1.15064 1.55439 1.17433 1.18019 0.82179 0.78418 0.86856 1.90751 1.51786 1.61480 1.41569 1.20454 0.95568 1.04838 0.95684 1.22272 0.99536 1.00169 0.91457 1.20763 0.92778 0.95808 0.99336 1.20169 0.94071 1.08047 0.90048 1.23062 0.90664 1.03281 1.00490 1.69999 1.19544 1.21056 1.08945 1.25930 0.91743 1.00392 0.94098 1.43115 1.14547 1.37312 1.10633 1.21761 0.96921 0.92628 0.88263 0.93213 0.93821 0.92243 0.92865 0.92063 0.93253 0.76063 0.82845 0.79883 0.77733 0.73864 0.79412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 8.52 71.98 0.61 -4.30 16 2 C -0.14 -5.56 5.20 30.59 0.16 -5.40 16 3 C 0.25 11.12 1.81 44.24 0.08 11.20 16 4 H 0.03 1.48 6.07 -2.39 -0.01 1.46 16 5 C -0.61 -31.84 9.09 25.60 0.23 -31.60 16 6 H 0.04 2.35 7.95 -2.91 -0.02 2.33 16 7 C -0.01 -0.44 5.42 84.65 0.46 0.02 16 8 N -0.93 -55.63 13.70 21.45 0.29 -55.33 16 9 Si 1.08 49.39 25.39 68.60 1.74 51.13 16 10 H -0.26 -10.80 6.73 99.48 0.67 -10.13 16 11 H -0.26 -11.52 6.38 99.48 0.63 -10.89 16 12 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 13 N -0.69 -25.71 4.98 -449.27 -2.24 -27.95 16 14 C 0.56 19.36 6.35 86.69 0.55 19.91 16 15 O -0.57 -22.83 13.42 -4.02 -0.05 -22.89 16 16 C -0.16 -4.28 5.98 -19.12 -0.11 -4.39 16 17 C -0.11 -2.48 9.73 23.80 0.23 -2.25 16 18 C -0.07 -1.24 10.09 22.38 0.23 -1.01 16 19 C -0.02 -0.34 6.78 38.81 0.26 -0.08 16 20 C -0.02 -0.47 12.00 84.37 1.01 0.54 16 21 N -0.48 -11.08 11.19 -197.51 -2.21 -13.29 16 22 C 0.15 3.03 12.76 179.91 2.30 5.33 16 23 N -0.38 -8.51 2.94 -349.86 -1.03 -9.54 16 24 C 0.13 3.02 10.51 83.54 0.88 3.90 16 25 H 0.05 1.78 5.64 -2.39 -0.01 1.77 16 26 H 0.04 1.66 7.87 -2.38 -0.02 1.64 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 2.27 4.43 -2.39 -0.01 2.25 16 29 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.26 15.36 8.72 -92.71 -0.81 14.55 16 31 H 0.40 13.23 6.62 -92.71 -0.61 12.62 16 32 H 0.15 2.92 6.58 -2.91 -0.02 2.90 16 33 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.21 2.83 8.06 -2.91 -0.02 2.80 16 35 H 0.25 2.82 8.06 -2.91 -0.02 2.79 16 36 H 0.19 4.01 7.56 -2.91 -0.02 3.99 16 Total: -1.00 -68.03 297.97 3.75 -64.28 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.36 Total: 21.74 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 6.89 Total: -8.14 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -5.18 Total: -106.11 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 1.74 Total: 51.13 kcal Total: -68.03 3.75 -64.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286081473.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.588 kcal (2) G-P(sol) polarization free energy of solvation -68.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds