Wall clock time and date at job start Mon Mar 30 2020 01:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36424 * 120.01320 * 2 1 4 4 C 1.38859 * 120.76084 * 180.02562 * 3 2 1 5 5 C 1.38244 * 120.50926 * 359.97438 * 4 3 2 6 6 N 1.39976 * 120.19917 * 179.97438 * 5 4 3 7 7 C 1.34772 * 120.00108 * 335.18103 * 6 5 4 8 8 O 1.21298 * 119.99747 * 354.46773 * 7 6 5 9 9 C 1.50699 * 120.00228 * 174.74322 * 7 6 5 10 10 C 1.52999 * 109.47458 * 179.72517 * 9 7 6 11 11 C 1.50699 * 109.47458 * 179.97438 * 10 9 7 12 12 H 1.08006 * 119.99780 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00244 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00227 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47400 * 59.99421 * 15 13 11 17 17 H 1.48492 * 109.47232 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46674 * 299.99754 * 15 13 11 19 19 C 1.39795 * 119.60513 * 0.27596 * 5 4 3 20 20 N 1.37178 * 133.80650 * 180.34780 * 19 5 4 21 21 H 0.97004 * 125.95736 * 359.31470 * 20 19 5 22 22 N 1.40023 * 108.08093 * 179.56691 * 20 19 5 23 23 C 1.30140 * 109.74500 * 359.78273 * 22 20 19 24 24 C 1.40176 * 120.01494 * 180.02562 * 2 1 3 25 25 H 1.09008 * 109.46783 * 90.00634 * 1 2 3 26 26 H 1.09008 * 109.47399 * 210.00036 * 1 2 3 27 27 H 1.08994 * 109.47659 * 330.00566 * 1 2 3 28 28 H 1.08007 * 119.61646 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.74665 * 179.97438 * 4 3 2 30 30 H 0.97004 * 119.99811 * 155.17655 * 6 5 4 31 31 H 1.09001 * 109.46740 * 299.72487 * 9 7 6 32 32 H 1.08995 * 109.47115 * 59.72019 * 9 7 6 33 33 H 1.09002 * 109.46692 * 300.00059 * 10 9 7 34 34 H 1.08995 * 109.46932 * 59.99339 * 10 9 7 35 35 H 0.96998 * 119.99794 * 179.97438 * 14 13 11 36 36 H 1.08004 * 125.66863 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1813 0.0000 4 6 3.5778 1.1994 -0.0005 5 6 4.2951 0.0177 -0.0005 6 7 5.6947 0.0435 -0.0016 7 6 6.3485 1.1149 -0.4925 8 8 5.7291 2.0121 -1.0243 9 6 7.8496 1.1954 -0.3863 10 6 8.3367 2.4991 -1.0219 11 6 9.8378 2.5798 -0.9152 12 1 10.3891 1.7813 -0.4410 13 6 10.5072 3.6730 -1.4228 14 7 9.8358 4.6452 -2.0007 15 14 12.3679 3.7728 -1.2911 16 1 12.9769 2.6185 -1.9995 17 1 12.8407 5.0376 -1.9090 18 1 12.7652 3.7413 0.1394 19 6 3.6145 -1.2034 -0.0059 20 7 4.0168 -2.5148 -0.0013 21 1 4.9345 -2.8291 -0.0022 22 7 2.8717 -3.3207 -0.0011 23 6 1.8072 -2.5720 -0.0005 24 6 2.2081 -1.2138 -0.0005 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6433 2.1132 -0.0004 29 1 4.1014 2.1440 -0.0009 30 1 6.1939 -0.7097 0.3510 31 1 8.1413 1.1718 0.6636 32 1 8.2965 0.3483 -0.9066 33 1 8.0449 2.5225 -2.0719 34 1 7.8897 3.3461 -0.5016 35 1 10.3068 5.4144 -2.3574 36 1 0.7873 -2.9274 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292476139.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:58 Heat of formation + Delta-G solvation = 39.190335 kcal Electronic energy + Delta-G solvation = -19826.845595 eV Core-core repulsion = 16697.842382 eV Total energy + Delta-G solvation = -3129.003213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70758 -39.71534 -37.26208 -35.16197 -33.57319 -32.23518 -31.08883 -30.54980 -29.73574 -26.83655 -25.30826 -23.14997 -22.22371 -22.20310 -20.95128 -19.72557 -18.27972 -17.24292 -16.65956 -15.75655 -15.57767 -15.40317 -14.93814 -14.83266 -14.52300 -14.37671 -13.60674 -13.46712 -13.39656 -12.73325 -12.41863 -12.24107 -11.93513 -11.71610 -11.56850 -11.23237 -11.07400 -10.96019 -10.67544 -10.49509 -10.05870 -9.79009 -9.73238 -9.27297 -9.13107 -8.60738 -8.37893 -7.48090 -6.01710 -4.06765 0.81062 1.43919 2.36710 2.51142 3.00666 3.20102 3.30906 3.36187 3.37736 3.77174 4.42213 4.44105 4.53922 4.82868 4.96913 5.10781 5.17742 5.25452 5.33387 5.47756 5.56397 5.61780 5.78984 5.99821 6.06528 6.07965 6.17253 6.27144 6.54157 6.62438 6.75000 6.89312 7.13243 7.39505 7.55156 7.66661 7.76140 7.99057 8.29114 8.49204 9.00704 9.57238 11.09105 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037222 B = 0.003412 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.071167 B = 8203.565472 C = 8861.118687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.040 4.040 3 C -0.131 4.131 4 C -0.086 4.086 5 C 0.132 3.868 6 N -0.683 5.683 7 C 0.509 3.491 8 O -0.509 6.509 9 C -0.129 4.129 10 C 0.037 3.963 11 C -0.530 4.530 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.105 3.895 20 N -0.506 5.506 21 H 0.439 0.561 22 N -0.254 5.254 23 C 0.073 3.927 24 C -0.159 4.159 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.129 0.871 29 H 0.156 0.844 30 H 0.403 0.597 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.926 -12.946 6.081 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.044 4.044 3 C -0.151 4.151 4 C -0.110 4.110 5 C 0.033 3.967 6 N -0.328 5.328 7 C 0.300 3.700 8 O -0.382 6.382 9 C -0.169 4.169 10 C 0.000 4.000 11 C -0.569 4.569 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.013 4.013 20 N -0.221 5.221 21 H 0.283 0.717 22 N -0.069 5.069 23 C -0.123 4.123 24 C -0.167 4.167 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.147 0.853 29 H 0.174 0.826 30 H 0.238 0.762 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -16.807 -13.300 5.598 22.152 hybrid contribution 1.594 0.282 0.173 1.628 sum -15.213 -13.018 5.771 20.838 Atomic orbital electron populations 1.20751 0.90932 1.02751 1.02395 1.19098 0.95693 0.90788 0.98837 1.20502 0.93523 0.97468 1.03565 1.21397 0.93863 0.97845 0.97870 1.16841 0.83136 0.90489 1.06208 1.43830 1.03911 1.22103 1.62946 1.21832 0.91921 0.80395 0.75894 1.90642 1.69116 1.37727 1.40716 1.21926 0.87047 1.04578 1.03328 1.18916 0.95236 0.89324 0.96571 1.21148 0.91906 1.05092 1.38728 0.92625 1.25017 0.98404 0.95704 0.95165 1.69980 1.35636 1.08794 1.38282 0.86637 0.85558 0.77352 0.78301 1.20244 1.21227 1.20212 1.18606 0.94278 0.85366 1.03081 1.45939 1.07800 1.01518 1.66891 0.71664 1.76628 0.91946 1.19246 1.19073 1.23842 0.98384 0.90070 0.99990 1.18559 0.91299 0.94072 1.12802 0.91016 0.91613 0.91287 0.85307 0.82618 0.76236 0.89706 0.89941 0.95677 0.95631 0.92802 0.79187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.92 36.00 0.36 -0.47 16 2 C -0.04 -0.45 5.88 -104.55 -0.62 -1.06 16 3 C -0.13 -1.61 9.59 -40.01 -0.38 -2.00 16 4 C -0.09 -1.29 8.71 -39.35 -0.34 -1.64 16 5 C 0.13 1.91 6.45 -83.55 -0.54 1.37 16 6 N -0.68 -9.59 5.37 -9.78 -0.05 -9.64 16 7 C 0.51 9.28 7.63 -10.99 -0.08 9.20 16 8 O -0.51 -11.15 13.16 5.54 0.07 -11.08 16 9 C -0.13 -2.46 5.64 -27.88 -0.16 -2.62 16 10 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 11 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 12 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 15 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 C 0.10 1.37 7.23 -83.99 -0.61 0.77 16 20 N -0.51 -5.78 7.44 32.45 0.24 -5.54 16 21 H 0.44 3.85 8.96 -182.65 -1.64 2.22 16 22 N -0.25 -2.99 12.57 30.88 0.39 -2.60 16 23 C 0.07 0.75 11.64 -16.98 -0.20 0.55 16 24 C -0.16 -1.91 5.98 -106.98 -0.64 -2.55 16 25 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 26 H 0.06 0.39 7.83 -51.92 -0.41 -0.01 16 27 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 29 H 0.16 2.65 5.77 -52.49 -0.30 2.35 16 30 H 0.40 4.24 8.79 -40.82 -0.36 3.88 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.19 1.21 8.04 -52.48 -0.42 0.79 16 LS Contribution 312.42 15.07 4.71 4.71 Total: -1.00 -34.24 312.42 -8.29 -42.52 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.62 Total: 2.51 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -3.74 Total: -11.02 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 1.31 Total: -43.96 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.07 Total: -11.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.24 -8.29 -42.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292476139.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.715 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds