Wall clock time and date at job start Mon Mar 30 2020 01:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36424 * 120.01320 * 2 1 4 4 C 1.38859 * 120.76084 * 180.02562 * 3 2 1 5 5 C 1.38244 * 120.50926 * 359.97438 * 4 3 2 6 6 N 1.39976 * 120.19917 * 179.97438 * 5 4 3 7 7 C 1.34772 * 120.00108 * 335.18103 * 6 5 4 8 8 O 1.21298 * 119.99747 * 354.46773 * 7 6 5 9 9 C 1.50699 * 120.00228 * 174.74322 * 7 6 5 10 10 C 1.52999 * 109.47458 * 179.72517 * 9 7 6 11 11 C 1.50699 * 109.47458 * 179.97438 * 10 9 7 12 12 H 1.08006 * 119.99780 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00244 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00227 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47400 * 59.99421 * 15 13 11 17 17 H 1.48492 * 109.47232 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46674 * 299.99754 * 15 13 11 19 19 C 1.39795 * 119.60513 * 0.27596 * 5 4 3 20 20 N 1.37178 * 133.80650 * 180.34780 * 19 5 4 21 21 H 0.97004 * 125.95736 * 359.31470 * 20 19 5 22 22 N 1.40023 * 108.08093 * 179.56691 * 20 19 5 23 23 C 1.30140 * 109.74500 * 359.78273 * 22 20 19 24 24 C 1.40176 * 120.01494 * 180.02562 * 2 1 3 25 25 H 1.09008 * 109.46783 * 90.00634 * 1 2 3 26 26 H 1.09008 * 109.47399 * 210.00036 * 1 2 3 27 27 H 1.08994 * 109.47659 * 330.00566 * 1 2 3 28 28 H 1.08007 * 119.61646 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.74665 * 179.97438 * 4 3 2 30 30 H 0.97004 * 119.99811 * 155.17655 * 6 5 4 31 31 H 1.09001 * 109.46740 * 299.72487 * 9 7 6 32 32 H 1.08995 * 109.47115 * 59.72019 * 9 7 6 33 33 H 1.09002 * 109.46692 * 300.00059 * 10 9 7 34 34 H 1.08995 * 109.46932 * 59.99339 * 10 9 7 35 35 H 0.96998 * 119.99794 * 179.97438 * 14 13 11 36 36 H 1.08004 * 125.66863 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1813 0.0000 4 6 3.5778 1.1994 -0.0005 5 6 4.2951 0.0177 -0.0005 6 7 5.6947 0.0435 -0.0016 7 6 6.3485 1.1149 -0.4925 8 8 5.7291 2.0121 -1.0243 9 6 7.8496 1.1954 -0.3863 10 6 8.3367 2.4991 -1.0219 11 6 9.8378 2.5798 -0.9152 12 1 10.3891 1.7813 -0.4410 13 6 10.5072 3.6730 -1.4228 14 7 9.8358 4.6452 -2.0007 15 14 12.3679 3.7728 -1.2911 16 1 12.9769 2.6185 -1.9995 17 1 12.8407 5.0376 -1.9090 18 1 12.7652 3.7413 0.1394 19 6 3.6145 -1.2034 -0.0059 20 7 4.0168 -2.5148 -0.0013 21 1 4.9345 -2.8291 -0.0022 22 7 2.8717 -3.3207 -0.0011 23 6 1.8072 -2.5720 -0.0005 24 6 2.2081 -1.2138 -0.0005 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6433 2.1132 -0.0004 29 1 4.1014 2.1440 -0.0009 30 1 6.1939 -0.7097 0.3510 31 1 8.1413 1.1718 0.6636 32 1 8.2965 0.3483 -0.9066 33 1 8.0449 2.5225 -2.0719 34 1 7.8897 3.3461 -0.5016 35 1 10.3068 5.4144 -2.3574 36 1 0.7873 -2.9274 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292476139.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:58 Heat of formation + Delta-G solvation = 15.439125 kcal Electronic energy + Delta-G solvation = -19827.875525 eV Core-core repulsion = 16697.842382 eV Total energy + Delta-G solvation = -3130.033143 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.65964 -41.05773 -38.28303 -36.36123 -35.58987 -33.51923 -32.66849 -31.53317 -30.67327 -28.29049 -26.74607 -24.32336 -23.67954 -23.12591 -22.18386 -21.07266 -19.42138 -18.82170 -18.00834 -17.31080 -16.71629 -16.61627 -16.46016 -15.96318 -15.80081 -15.42747 -14.99408 -14.60165 -14.31076 -14.09731 -14.07652 -13.38956 -13.24374 -12.90016 -12.78118 -12.59801 -12.52950 -12.50957 -11.94717 -11.93720 -11.66552 -11.44007 -11.33144 -10.86466 -10.67027 -10.56459 -9.60809 -8.49571 -8.19262 -6.33280 -0.16943 0.44453 1.37421 1.41671 1.45644 1.53406 1.65333 1.72791 1.98826 2.42461 2.76943 3.14011 3.60857 3.68519 3.79632 3.97585 4.05549 4.25121 4.39908 4.49138 4.52169 4.55405 4.81960 4.94817 4.97276 5.02164 5.15825 5.27125 5.40286 5.47382 5.53801 5.60384 5.66173 5.83252 5.95484 6.15237 6.22435 6.36953 6.54827 6.84430 7.12472 7.37019 8.93038 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037222 B = 0.003412 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.071167 B = 8203.565472 C = 8861.118687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.023 4.023 3 C -0.148 4.148 4 C -0.103 4.103 5 C 0.106 3.894 6 N -0.661 5.661 7 C 0.512 3.488 8 O -0.557 6.557 9 C -0.117 4.117 10 C 0.042 3.958 11 C -0.545 4.545 12 H 0.076 0.924 13 C -0.005 4.005 14 N -0.936 5.936 15 Si 0.972 3.028 16 H -0.263 1.263 17 H -0.288 1.288 18 H -0.262 1.262 19 C 0.099 3.901 20 N -0.504 5.504 21 H 0.447 0.553 22 N -0.271 5.271 23 C 0.086 3.914 24 C -0.173 4.173 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.126 0.874 30 H 0.421 0.579 31 H 0.110 0.890 32 H 0.108 0.892 33 H -0.016 1.016 34 H -0.014 1.014 35 H 0.263 0.737 36 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 -15.503 7.094 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.027 4.027 3 C -0.168 4.168 4 C -0.126 4.126 5 C 0.008 3.992 6 N -0.306 5.306 7 C 0.302 3.698 8 O -0.434 6.434 9 C -0.156 4.156 10 C 0.004 3.996 11 C -0.583 4.583 12 H 0.094 0.906 13 C -0.203 4.203 14 N -0.576 5.576 15 Si 0.796 3.204 16 H -0.188 1.188 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.020 4.020 20 N -0.221 5.221 21 H 0.294 0.706 22 N -0.085 5.085 23 C -0.109 4.109 24 C -0.182 4.182 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.259 0.741 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.072 0.928 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -17.514 -15.936 6.647 24.594 hybrid contribution 1.655 1.033 -0.132 1.955 sum -15.859 -14.904 6.515 22.717 Atomic orbital electron populations 1.20875 0.87804 1.04495 1.03632 1.19515 0.97815 0.89746 0.95605 1.20698 0.92504 0.99084 1.04476 1.21336 0.95316 0.97030 0.98965 1.16857 0.82807 0.91140 1.08413 1.43391 1.04226 1.21319 1.61705 1.21566 0.91594 0.80831 0.75792 1.90640 1.69792 1.39764 1.43179 1.21671 0.87919 1.01628 1.04394 1.18694 0.94968 0.91683 0.94223 1.21671 0.92793 1.05575 1.38263 0.90581 1.26109 1.04278 0.95276 0.94652 1.70162 1.38062 1.09680 1.39690 0.85395 0.78482 0.77516 0.78986 1.18788 1.21376 1.18705 1.18625 0.95006 0.85427 1.02933 1.46009 1.08494 1.00817 1.66742 0.70629 1.76638 0.92339 1.19657 1.19914 1.24490 0.99780 0.88809 0.97841 1.18945 0.90956 0.95345 1.12942 0.89782 0.89399 0.90136 0.83721 0.85585 0.74109 0.87219 0.87355 0.99725 0.99519 0.92831 0.75148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.92 71.23 0.71 -0.55 16 2 C -0.02 -0.47 5.88 -19.82 -0.12 -0.58 16 3 C -0.15 -3.62 9.59 21.99 0.21 -3.41 16 4 C -0.10 -3.23 8.71 22.42 0.20 -3.04 16 5 C 0.11 3.10 6.45 38.22 0.25 3.35 16 6 N -0.66 -18.67 5.37 -303.23 -1.63 -20.30 16 7 C 0.51 19.33 7.63 87.66 0.67 20.00 16 8 O -0.56 -26.19 13.16 -3.08 -0.04 -26.23 16 9 C -0.12 -4.48 5.64 29.85 0.17 -4.31 16 10 C 0.04 2.28 4.26 29.85 0.13 2.41 16 11 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 12 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 13 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 14 N -0.94 -58.83 13.29 21.45 0.28 -58.54 16 15 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 16 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 19 C 0.10 2.49 7.23 39.27 0.28 2.77 16 20 N -0.50 -10.68 7.44 -51.25 -0.38 -11.06 16 21 H 0.45 7.20 8.96 -213.37 -1.91 5.28 16 22 N -0.27 -5.68 12.57 -56.21 -0.71 -6.39 16 23 C 0.09 1.48 11.64 85.78 1.00 2.48 16 24 C -0.17 -3.79 5.98 -21.39 -0.13 -3.92 16 25 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.09 0.64 7.83 -2.38 -0.02 0.62 16 27 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 28 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.13 4.71 5.77 -2.91 -0.02 4.70 16 30 H 0.42 8.44 8.79 -92.71 -0.82 7.63 16 31 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 32 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 33 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 16 34 H -0.01 -0.84 8.10 -2.39 -0.02 -0.85 16 35 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.23 1.77 8.04 -2.91 -0.02 1.75 16 Total: -1.00 -78.38 312.42 2.01 -76.37 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -1.60 Total: 15.18 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 4.06 Total: -14.91 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -2.43 Total: -96.29 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.04 Total: -26.23 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -78.38 2.01 -76.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292476139.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.807 kcal (2) G-P(sol) polarization free energy of solvation -78.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds