Wall clock time and date at job start Mon Mar 30 2020 01:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40164 * 120.29953 * 2 1 4 4 C 1.35181 * 120.31842 * 179.97438 * 3 2 1 5 5 N 1.36238 * 120.71028 * 359.97438 * 4 3 2 6 6 N 1.40016 * 132.01376 * 180.02562 * 5 4 3 7 7 C 1.30749 * 109.60417 * 179.97438 * 6 5 4 8 8 C 1.40556 * 108.74237 * 359.78898 * 7 6 5 9 9 C 1.46569 * 126.57427 * 180.02562 * 8 7 6 10 10 O 1.21722 * 119.99320 * 180.38965 * 9 8 7 11 11 N 1.34769 * 120.00244 * 0.38721 * 9 8 7 12 12 C 1.46502 * 119.99960 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47288 * 180.02562 * 12 11 9 14 14 C 1.50694 * 109.47085 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99918 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99531 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00164 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47089 * 90.00060 * 18 16 14 20 20 H 1.48494 * 109.47266 * 210.00367 * 18 16 14 21 21 H 1.48508 * 109.47133 * 330.00455 * 18 16 14 22 22 C 1.36575 * 120.07857 * 0.02562 * 5 4 3 23 23 C 1.36457 * 120.29356 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.47105 * 89.99547 * 1 2 3 25 25 H 1.08998 * 109.47453 * 209.99811 * 1 2 3 26 26 H 1.09001 * 109.46710 * 330.00098 * 1 2 3 27 27 H 1.07995 * 119.83967 * 359.94888 * 3 2 1 28 28 H 1.08004 * 119.64776 * 180.02562 * 4 3 2 29 29 H 1.08002 * 125.62696 * 179.97438 * 7 6 5 30 30 H 0.97003 * 120.00333 * 359.97438 * 11 9 8 31 31 H 1.09004 * 109.47016 * 299.99797 * 12 11 9 32 32 H 1.08999 * 109.47089 * 59.99778 * 12 11 9 33 33 H 1.09004 * 109.46767 * 299.99755 * 13 12 11 34 34 H 1.09000 * 109.46817 * 59.99285 * 13 12 11 35 35 H 0.97002 * 119.99669 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.36940 * 0.05510 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2141 1.2102 0.0000 4 6 3.5659 1.2106 0.0005 5 7 4.2621 0.0395 0.0016 6 7 5.6351 -0.2345 0.0028 7 6 5.8243 -1.5282 0.0040 8 6 4.5727 -2.1676 0.0086 9 6 4.3304 -3.6132 0.0119 10 8 3.1902 -4.0391 0.0087 11 7 5.3701 -4.4707 0.0185 12 6 5.1279 -5.9155 0.0212 13 6 6.4663 -6.6570 0.0294 14 6 6.2172 -8.1432 0.0316 15 1 5.2055 -8.5211 0.0279 16 6 7.2808 -9.0205 0.0382 17 7 8.5128 -8.5602 0.0431 18 14 6.9721 -10.8628 0.0416 19 1 6.8961 -11.3545 -1.3575 20 1 8.0831 -11.5496 0.7480 21 1 5.6914 -11.1488 0.7370 22 6 3.5959 -1.1527 0.0016 23 6 2.1953 -1.1782 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6764 2.1467 -0.0008 28 1 4.0999 2.1494 0.0009 29 1 6.7840 -2.0237 0.0047 30 1 6.2788 -4.1312 0.0207 31 1 4.5574 -6.1866 0.9096 32 1 4.5648 -6.1912 -0.8704 33 1 7.0372 -6.3860 -0.8587 34 1 7.0290 -6.3811 0.9212 35 1 9.2611 -9.1774 0.0481 36 1 1.6661 -2.1197 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295044444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:03 Heat of formation + Delta-G solvation = 50.445151 kcal Electronic energy + Delta-G solvation = -19596.321362 eV Core-core repulsion = 16467.806194 eV Total energy + Delta-G solvation = -3128.515168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27352 -38.85615 -37.72013 -34.74946 -33.75597 -32.77475 -31.50767 -30.21612 -29.06466 -27.32458 -24.89280 -23.81755 -22.49657 -22.09893 -20.83050 -19.83888 -17.91886 -16.92211 -16.40087 -16.21738 -15.95387 -15.42056 -14.93318 -14.67805 -14.58842 -14.42901 -13.80464 -13.53584 -13.18434 -12.91249 -12.87852 -12.28971 -12.17634 -12.05878 -11.68422 -11.15423 -11.00744 -10.99237 -10.60422 -10.48920 -10.24925 -9.73588 -9.53752 -9.42381 -9.15739 -8.49412 -8.31333 -7.71918 -6.05973 -4.08390 0.43997 0.80632 1.98142 2.17563 2.99899 3.31979 3.37955 3.42101 3.76158 3.85031 4.10662 4.26331 4.36485 4.46879 4.58885 4.84730 4.96427 5.13538 5.18981 5.24666 5.31147 5.41155 5.50973 5.59499 5.78420 6.05934 6.18229 6.24342 6.42868 6.47689 6.61538 6.81036 7.03294 7.30303 7.57474 7.67370 7.92979 8.15064 8.33314 8.80438 8.97943 9.56150 11.05730 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037383 B = 0.003218 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.829917 B = 8699.926866 C = 9422.999262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 C -0.159 4.159 4 C 0.111 3.889 5 N -0.271 5.271 6 N -0.323 5.323 7 C 0.119 3.881 8 C -0.304 4.304 9 C 0.590 3.410 10 O -0.562 6.562 11 N -0.719 5.719 12 C 0.125 3.875 13 C 0.012 3.988 14 C -0.520 4.520 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.162 3.838 23 C -0.106 4.106 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.156 0.844 28 H 0.171 0.829 29 H 0.201 0.799 30 H 0.395 0.605 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.653 22.069 -0.115 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.180 4.180 4 C -0.015 4.015 5 N -0.036 5.036 6 N -0.144 5.144 7 C -0.061 4.061 8 C -0.319 4.319 9 C 0.377 3.623 10 O -0.443 6.443 11 N -0.368 5.368 12 C 0.003 3.997 13 C -0.026 4.026 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C 0.042 3.958 23 C -0.125 4.125 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.174 0.826 28 H 0.188 0.812 29 H 0.217 0.783 30 H 0.228 0.772 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.533 22.779 -0.109 25.532 hybrid contribution 0.250 -1.563 -0.016 1.583 sum -11.283 21.216 -0.126 24.030 Atomic orbital electron populations 1.20830 0.89513 1.03657 1.03157 1.20045 0.97353 0.92139 0.95982 1.20801 0.91840 0.99578 1.05818 1.21509 0.92019 0.88356 0.99655 1.46069 1.06435 1.05282 1.45794 1.77568 0.87995 1.17102 1.31697 1.24156 0.98977 0.90343 0.92615 1.19935 0.91277 0.94005 1.26663 1.16876 0.85135 0.83953 0.76331 1.90723 1.21950 1.79172 1.52430 1.46057 1.08362 1.08089 1.74276 1.21698 1.01019 0.76248 1.00776 1.19331 0.90426 0.94948 0.97852 1.21063 0.93006 0.90669 1.51174 0.92239 1.24997 0.95069 0.99204 0.95055 1.69956 0.98051 1.34851 1.50492 0.86516 0.77921 0.84983 0.78163 1.20590 1.21206 1.19726 1.19303 0.93014 0.85658 0.97866 1.20784 0.90034 1.00253 1.01447 0.90238 0.90530 0.90875 0.82648 0.81187 0.78274 0.77173 0.92565 0.92568 0.95924 0.95909 0.92881 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.03 36.00 0.36 -0.31 16 2 C -0.05 -0.44 5.89 -104.54 -0.62 -1.06 16 3 C -0.16 -1.12 9.67 -39.95 -0.39 -1.51 16 4 C 0.11 0.98 11.17 -16.68 -0.19 0.79 16 5 N -0.27 -3.51 3.86 -10.55 -0.04 -3.55 16 6 N -0.32 -4.50 12.57 30.75 0.39 -4.11 16 7 C 0.12 1.62 11.44 -17.14 -0.20 1.43 16 8 C -0.30 -4.84 6.17 -104.67 -0.65 -5.49 16 9 C 0.59 11.02 7.78 -12.91 -0.10 10.92 16 10 O -0.56 -12.05 15.71 5.17 0.08 -11.97 16 11 N -0.72 -13.26 5.55 -61.65 -0.34 -13.60 16 12 C 0.12 2.72 5.61 -4.04 -0.02 2.70 16 13 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 18 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.16 2.36 6.76 -84.07 -0.57 1.79 16 23 C -0.11 -1.32 9.38 -39.53 -0.37 -1.69 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 27 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 28 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 29 H 0.20 2.06 7.46 -52.49 -0.39 1.67 16 30 H 0.39 6.25 7.39 -40.82 -0.30 5.95 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.16 2.16 7.12 -52.49 -0.37 1.78 16 LS Contribution 316.42 15.07 4.77 4.77 Total: -1.00 -34.56 316.42 -7.12 -41.69 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.41 Total: 1.45 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -3.28 Total: -5.61 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.74 Total: -46.85 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.56 -7.12 -41.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295044444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.131 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds