Wall clock time and date at job start Mon Mar 30 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38726 * 120.32092 * 2 1 4 4 C 1.38475 * 118.49725 * 180.02562 * 3 2 1 5 5 C 1.39247 * 119.07064 * 359.97438 * 4 3 2 6 6 C 1.48482 * 119.72141 * 179.97438 * 5 4 3 7 7 N 1.30723 * 126.40727 * 359.69290 * 6 5 4 8 8 O 1.21294 * 110.10476 * 179.87058 * 7 6 5 9 9 C 1.33666 * 110.01527 * 0.39153 * 8 7 6 10 10 C 1.50704 * 126.43616 * 179.75178 * 9 8 7 11 11 C 1.52996 * 109.47421 * 270.00413 * 10 9 8 12 12 C 1.50701 * 109.47416 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99756 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00077 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00372 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99823 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47175 * 89.99641 * 16 14 12 18 18 H 1.48496 * 109.46887 * 209.99862 * 16 14 12 19 19 H 1.48503 * 109.46836 * 329.99816 * 16 14 12 20 20 N 1.30970 * 107.11954 * 359.76024 * 9 8 7 21 21 N 1.32621 * 120.56157 * 359.97438 * 5 4 3 22 22 C 1.31706 * 121.62646 * 0.04149 * 21 5 4 23 23 C 1.50700 * 119.55041 * 179.97438 * 22 21 5 24 24 H 1.08995 * 109.46617 * 90.00363 * 1 2 3 25 25 H 1.08997 * 109.46982 * 210.00286 * 1 2 3 26 26 H 1.08999 * 109.47072 * 329.99978 * 1 2 3 27 27 H 1.08001 * 120.75829 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.46345 * 179.72690 * 4 3 2 29 29 H 1.09002 * 109.47208 * 30.00994 * 10 9 8 30 30 H 1.09004 * 109.46464 * 150.00241 * 10 9 8 31 31 H 1.09007 * 109.47405 * 299.99980 * 11 10 9 32 32 H 1.09002 * 109.47313 * 59.99894 * 11 10 9 33 33 H 0.96999 * 120.00370 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.47236 * 269.97591 * 23 22 21 35 35 H 1.08999 * 109.47509 * 29.97962 * 23 22 21 36 36 H 1.08998 * 109.47046 * 149.98085 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2074 1.1975 0.0000 4 6 3.5915 1.1534 -0.0005 5 6 4.2290 -0.0845 -0.0005 6 6 5.7124 -0.1486 -0.0017 7 7 6.5330 0.8690 -0.0084 8 8 7.6814 0.4785 -0.0048 9 6 7.7103 -0.8578 -0.0037 10 6 8.9418 -1.7264 -0.0047 11 6 9.3566 -2.0215 -1.4475 12 6 10.5878 -2.8907 -1.4485 13 1 11.0303 -3.2011 -0.5135 14 6 11.1497 -3.2886 -2.6430 15 7 10.6112 -2.9101 -3.7815 16 14 12.6763 -4.3654 -2.6442 17 1 12.2737 -5.7948 -2.6429 18 1 13.4828 -4.0792 -3.8577 19 1 13.4856 -4.0780 -1.4327 20 7 6.4672 -1.2703 -0.0018 21 7 3.5225 -1.2069 0.0005 22 6 2.2055 -1.1939 0.0007 23 6 1.4493 -2.4975 0.0014 24 1 -0.3632 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6851 2.1428 -0.0004 28 1 4.1683 2.0664 -0.0050 29 1 9.7524 -1.2082 0.5077 30 1 8.7263 -2.6627 0.5102 31 1 8.5461 -2.5398 -1.9599 32 1 9.5720 -1.0852 -1.9624 33 1 11.0063 -3.1904 -4.6219 34 1 1.2665 -2.8119 -1.0262 35 1 2.0371 -3.2582 0.5150 36 1 0.4974 -2.3651 0.5156 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316697995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:58 Heat of formation + Delta-G solvation = 63.695005 kcal Electronic energy + Delta-G solvation = -19517.414608 eV Core-core repulsion = 16389.473997 eV Total energy + Delta-G solvation = -3127.940611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.65044 -41.50651 -37.24666 -36.40697 -35.01934 -34.32160 -33.92369 -31.97155 -29.39015 -28.50478 -27.72602 -25.23395 -24.50723 -23.46537 -23.13343 -21.63917 -19.31655 -19.01032 -18.44391 -17.54118 -17.24746 -16.50413 -16.11597 -15.92447 -15.72888 -15.15059 -14.57482 -14.33839 -14.20109 -13.94314 -13.78264 -13.66144 -13.50889 -13.44734 -12.98321 -12.84282 -12.78329 -12.51988 -12.29718 -12.18255 -11.97269 -11.92917 -11.36111 -11.04356 -10.82852 -10.60477 -10.57312 -9.70139 -8.20620 -6.33037 -0.61337 0.12112 0.24322 1.24741 1.45786 1.47223 1.58285 1.73192 2.16346 2.43658 2.65366 2.71492 3.14736 3.49814 3.72483 3.75280 3.82125 3.92147 4.17398 4.37788 4.45258 4.49867 4.51364 4.63963 4.69342 4.72762 4.82506 4.88645 4.90823 5.03110 5.11626 5.20576 5.25113 5.42115 5.51117 5.65952 5.76881 6.12070 6.79330 6.82645 6.99991 7.37187 8.92083 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.030582 B = 0.003305 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.352689 B = 8470.843576 C = 8989.910438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.113 4.113 3 C -0.070 4.070 4 C -0.138 4.138 5 C 0.158 3.842 6 C 0.204 3.796 7 N -0.384 5.384 8 O 0.075 5.925 9 C 0.211 3.789 10 C -0.013 4.013 11 C 0.034 3.966 12 C -0.538 4.538 13 H 0.080 0.920 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.972 3.028 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.255 1.255 20 N -0.492 5.492 21 N -0.484 5.484 22 C 0.110 3.890 23 C -0.105 4.105 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.184 0.816 28 H 0.148 0.852 29 H 0.123 0.877 30 H 0.113 0.887 31 H -0.011 1.011 32 H 0.000 1.000 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.837 7.254 9.695 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.116 4.116 3 C -0.095 4.095 4 C -0.160 4.160 5 C 0.022 3.978 6 C -0.067 4.067 7 N -0.095 5.095 8 O 0.016 5.984 9 C -0.009 4.009 10 C -0.051 4.051 11 C -0.005 4.005 12 C -0.576 4.576 13 H 0.098 0.902 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.796 3.204 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.178 1.178 20 N -0.225 5.225 21 N -0.195 5.195 22 C -0.030 4.030 23 C -0.162 4.162 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.201 0.799 28 H 0.166 0.834 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.008 0.992 32 H 0.018 0.982 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.930 6.973 9.527 24.030 hybrid contribution 0.974 0.200 -0.627 1.176 sum -19.955 7.174 8.900 22.998 Atomic orbital electron populations 1.20983 0.86359 1.05197 1.04250 1.21396 1.00068 0.92402 0.97698 1.21896 0.91908 1.00337 0.95316 1.22151 0.96872 0.97051 0.99955 1.17946 0.86132 0.90938 1.02797 1.23972 0.96721 0.84200 1.01783 1.74716 0.89744 1.22751 1.22241 1.85238 1.22805 1.24444 1.65884 1.29675 0.97036 0.82024 0.92138 1.20583 0.87230 0.96191 1.01143 1.18956 0.95737 0.95942 0.89846 1.21563 1.11191 1.31261 0.93550 0.90172 1.26037 1.01075 0.97736 0.95114 1.70124 1.42450 1.46863 0.98205 0.85339 0.78469 0.78499 0.78094 1.20025 1.21228 1.17829 1.72156 1.00875 1.28238 1.21211 1.67228 1.09682 1.30766 1.11860 1.21826 0.87829 0.97896 0.95465 1.20921 0.99908 0.91141 1.04188 0.89088 0.89118 0.89064 0.79886 0.83432 0.85935 0.86861 0.99218 0.98196 0.92756 0.89358 0.91672 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.62 71.24 0.69 -0.15 16 2 C -0.11 -1.95 5.90 -19.73 -0.12 -2.07 16 3 C -0.07 -1.22 9.85 22.44 0.22 -1.00 16 4 C -0.14 -3.58 9.73 22.57 0.22 -3.36 16 5 C 0.16 5.52 6.75 42.00 0.28 5.80 16 6 C 0.20 8.26 7.90 137.33 1.09 9.35 16 7 N -0.38 -15.01 11.83 -59.21 -0.70 -15.71 16 8 O 0.07 2.96 11.29 74.64 0.84 3.80 16 9 C 0.21 8.67 7.75 88.36 0.68 9.36 16 10 C -0.01 -0.51 5.78 29.85 0.17 -0.33 16 11 C 0.03 1.74 4.95 29.85 0.15 1.89 16 12 C -0.54 -29.21 9.11 25.60 0.23 -28.97 16 13 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 14 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 15 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 16 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.25 -10.52 7.11 99.48 0.71 -9.82 16 20 N -0.49 -21.67 11.56 -302.57 -3.50 -25.17 16 21 N -0.48 -16.64 10.20 -172.97 -1.76 -18.40 16 22 C 0.11 2.67 6.78 42.60 0.29 2.96 16 23 C -0.10 -1.78 9.76 71.24 0.70 -1.08 16 24 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.09 0.46 5.95 -2.39 -0.01 0.45 16 26 H 0.09 0.37 8.09 -2.39 -0.02 0.35 16 27 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 28 H 0.15 3.52 7.86 -2.91 -0.02 3.50 16 29 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 30 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 31 H -0.01 -0.63 8.14 -2.38 -0.02 -0.64 16 32 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.11 1.06 5.93 -2.39 -0.01 1.04 16 Total: -1.00 -74.60 317.32 3.35 -71.25 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.10 Total: 3.03 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 5.06 Total: -7.24 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -5.68 Total: -116.09 kcal Atomic # 8 Polarization: 2.96 SS G_CDS: 0.84 Total: 3.80 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -74.60 3.35 -71.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316697995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.943 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds