Wall clock time and date at job start Mon Mar 30 2020 00:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48498 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47197 * 300.00445 * 3 2 1 6 6 H 1.48503 * 109.46773 * 60.00575 * 3 2 1 7 7 C 1.38803 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00201 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00024 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47023 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46862 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.46853 * 180.02562 * 12 11 10 14 14 C 1.48562 * 111.00142 * 54.57993 * 13 12 11 15 15 C 1.54377 * 104.59407 * 159.03785 * 14 13 12 16 16 C 1.54266 * 105.06190 * 336.14868 * 15 14 13 17 17 H 1.08997 * 110.32179 * 241.10098 * 16 15 14 18 18 N 1.46501 * 110.32047 * 118.89565 * 16 15 14 19 19 C 1.37338 * 120.00251 * 86.45992 * 18 16 15 20 20 N 1.30096 * 120.00592 * 179.97438 * 19 18 16 21 21 O 1.35097 * 119.99917 * 359.97438 * 19 18 16 22 22 C 1.48562 * 110.99842 * 170.00157 * 13 12 11 23 23 H 0.96999 * 119.99707 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46503 * 60.00423 * 10 9 7 25 25 H 1.08997 * 109.47276 * 300.00278 * 10 9 7 26 26 H 1.08998 * 109.47350 * 60.00395 * 11 10 9 27 27 H 1.08997 * 109.47341 * 300.00262 * 11 10 9 28 28 H 1.08998 * 109.47000 * 59.99954 * 12 11 10 29 29 H 1.08997 * 109.47172 * 300.00139 * 12 11 10 30 30 H 1.09000 * 110.41111 * 40.26361 * 14 13 12 31 31 H 1.08989 * 110.41482 * 277.81625 * 14 13 12 32 32 H 1.09005 * 110.32720 * 217.25400 * 15 14 13 33 33 H 1.09003 * 110.32570 * 95.04509 * 15 14 13 34 34 H 0.96998 * 119.99846 * 266.44964 * 18 16 15 35 35 H 0.97000 * 120.00520 * 179.97438 * 20 19 18 36 36 H 0.96700 * 114.00104 * 180.02562 * 21 19 18 37 37 H 1.08998 * 110.41528 * 82.17831 * 22 13 12 38 38 H 1.08997 * 110.50874 * 319.78619 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8917 2.3963 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1514 -6.3078 0.0008 13 7 2.6362 -7.6834 0.0008 14 6 1.6972 -7.9003 -1.1299 15 6 1.6737 -9.4312 -1.3279 16 6 3.0102 -9.9317 -0.7421 17 1 3.6027 -10.4209 -1.5151 18 7 2.7650 -10.8517 0.3713 19 6 2.5673 -12.1886 0.1266 20 7 2.3500 -13.0057 1.1153 21 8 2.5986 -12.6552 -1.1408 22 6 3.7287 -8.6611 -0.2394 23 1 -0.4850 0.8401 0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1245 -3.7314 -0.8905 26 1 1.3704 -5.4847 -0.8897 27 1 1.3709 -5.4841 0.8903 28 1 3.7598 -6.1473 0.8907 29 1 3.7601 -6.1482 -0.8892 30 1 2.0646 -7.4063 -2.0293 31 1 0.7028 -7.5349 -0.8736 32 1 1.6103 -9.6749 -2.3884 33 1 0.8353 -9.8701 -0.7870 34 1 2.7423 -10.5167 1.2813 35 1 2.2101 -13.9499 0.9425 36 1 2.4487 -13.6077 -1.2131 37 1 4.2639 -8.8684 0.6872 38 1 4.4156 -8.2872 -0.9987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330506739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:58 Heat of formation + Delta-G solvation = -49.749298 kcal Electronic energy + Delta-G solvation = -18264.017145 eV Core-core repulsion = 15266.601172 eV Total energy + Delta-G solvation = -2997.415974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.125 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73459 -39.59865 -36.46679 -34.68838 -34.55653 -32.91526 -31.02786 -29.14129 -27.81898 -26.17053 -23.45596 -22.91914 -21.98871 -21.23898 -19.53748 -18.97285 -17.85307 -17.06173 -16.89790 -16.67962 -16.36323 -15.94118 -15.76449 -15.62867 -15.16653 -14.72943 -14.50201 -13.84366 -13.67975 -13.32586 -13.15939 -12.93159 -12.87429 -12.83873 -12.36383 -12.24668 -12.12913 -11.89539 -11.65252 -11.32955 -11.27445 -11.15214 -10.50222 -10.30909 -9.47662 -9.20290 -8.66617 -8.37448 -6.13628 1.31803 1.38527 1.49764 1.75191 1.82635 1.88907 2.28432 2.96835 3.00905 3.25838 3.33106 3.52195 3.75720 4.02053 4.17671 4.24021 4.34066 4.35587 4.50934 4.52191 4.62824 4.71633 4.78839 4.82922 4.87872 5.01206 5.06207 5.15426 5.25573 5.30680 5.40130 5.82278 5.91268 6.01700 6.07505 6.18470 6.76043 7.04911 7.80590 8.72218 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.063446 B = 0.002575 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.215814 B =10872.714191 C =10985.343117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.013 3.987 3 Si 0.995 3.005 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.202 6.202 10 C -0.086 4.086 11 C -0.085 4.085 12 C 0.060 3.940 13 N -0.518 5.518 14 C 0.028 3.972 15 C -0.130 4.130 16 C 0.160 3.840 17 H 0.102 0.898 18 N -0.686 5.686 19 C 0.591 3.409 20 N -0.853 5.853 21 O -0.538 6.538 22 C 0.026 3.974 23 H 0.271 0.729 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.425 0.575 35 H 0.352 0.648 36 H 0.429 0.571 37 H 0.096 0.904 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -23.479 -4.137 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.817 3.183 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.027 5.973 10 C -0.236 4.236 11 C -0.124 4.124 12 C -0.070 4.070 13 N -0.243 5.243 14 C -0.100 4.100 15 C -0.170 4.170 16 C 0.054 3.946 17 H 0.120 0.880 18 N -0.335 5.335 19 C 0.274 3.726 20 N -0.517 5.517 21 O -0.335 6.335 22 C -0.102 4.102 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.265 0.735 35 H 0.170 0.830 36 H 0.288 0.712 37 H 0.114 0.886 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.872 -22.864 -3.222 24.091 hybrid contribution 1.561 0.510 -1.125 1.990 sum 8.433 -22.354 -4.346 24.284 Atomic orbital electron populations 1.70168 1.07704 1.28465 1.48115 1.26095 0.96057 1.03192 0.93820 0.84948 0.78437 0.76599 0.78271 1.18594 1.19676 1.19721 1.23066 0.94714 0.91938 1.58651 0.90883 1.84671 1.14291 1.01322 1.97028 1.23152 1.00030 0.97463 1.02941 1.21201 0.98060 0.90559 1.02561 1.22186 0.95791 0.87280 1.01717 1.65455 1.13316 1.03603 1.41905 1.23151 0.97876 0.96313 0.92630 1.22808 0.98014 0.94214 1.01950 1.21661 0.95665 0.89055 0.88256 0.88011 1.43869 1.77929 1.01086 1.10585 1.20172 0.86034 0.87262 0.79118 1.69728 1.39848 1.09897 1.32262 1.84568 1.88293 1.32539 1.28105 1.23454 0.93533 0.91068 1.02192 0.91989 0.91869 0.91901 0.91800 0.91855 0.89963 0.93664 0.93146 0.90904 0.89466 0.91406 0.73519 0.82968 0.71209 0.88557 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.12 13.22 21.65 0.29 -54.83 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 44.01 29.55 68.60 2.03 46.03 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.05 9.50 67.96 0.65 -30.41 16 8 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 9 S -0.20 -10.80 21.44 -56.49 -1.21 -12.01 16 10 C -0.09 -3.42 5.67 71.98 0.41 -3.01 16 11 C -0.08 -2.67 4.93 30.60 0.15 -2.52 16 12 C 0.06 1.42 5.06 86.31 0.44 1.86 16 13 N -0.52 -10.76 5.49 -881.51 -4.84 -15.60 16 14 C 0.03 0.57 5.11 86.45 0.44 1.01 16 15 C -0.13 -2.11 6.78 31.49 0.21 -1.89 16 16 C 0.16 2.30 3.40 45.89 0.16 2.45 16 17 H 0.10 1.30 7.66 -2.39 -0.02 1.28 16 18 N -0.69 -11.04 5.10 -437.32 -2.23 -13.27 16 19 C 0.59 9.68 9.05 179.63 1.62 11.31 16 20 N -0.85 -15.97 14.11 -174.50 -2.46 -18.43 16 21 O -0.54 -6.13 12.60 -83.72 -1.06 -7.19 16 22 C 0.03 0.39 6.10 86.45 0.53 0.92 16 23 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 24 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.06 2.42 8.14 -2.40 -0.02 2.41 16 26 H 0.06 2.03 6.84 -2.39 -0.02 2.02 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.00 7.88 -2.39 -0.02 0.98 16 30 H 0.05 0.99 8.00 -2.39 -0.02 0.97 16 31 H 0.07 1.67 7.67 -2.39 -0.02 1.66 16 32 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.07 1.27 7.95 -2.39 -0.02 1.25 16 34 H 0.42 7.30 8.67 -92.71 -0.80 6.50 16 35 H 0.35 4.94 8.58 -92.71 -0.80 4.15 16 36 H 0.43 1.01 8.72 -74.06 -0.65 0.37 16 37 H 0.10 1.37 7.99 -2.39 -0.02 1.35 16 38 H 0.07 0.97 7.82 -2.39 -0.02 0.95 16 Total: -1.00 -70.87 328.52 -5.58 -76.45 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -1.16 Total: 17.92 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.07 Total: -19.07 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -9.25 Total: -102.14 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -1.06 Total: -7.19 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -1.21 Total: -12.01 kcal Total: -70.87 -5.58 -76.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330506739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.698 kcal (2) G-P(sol) polarization free energy of solvation -70.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds