Wall clock time and date at job start Mon Mar 30 2020 01:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36556 * 119.76848 * 2 1 4 4 C 1.39633 * 119.85932 * 179.97438 * 3 2 1 5 5 C 1.46557 * 133.92404 * 180.02562 * 4 3 2 6 6 C 1.34195 * 107.01237 * 180.02562 * 5 4 3 7 7 N 1.36955 * 109.93080 * 0.23588 * 6 5 4 8 8 H 0.97006 * 125.07666 * 179.72445 * 7 6 5 9 9 C 1.37712 * 109.85462 * 359.59910 * 7 6 5 10 10 C 1.39030 * 133.43365 * 180.11024 * 9 7 6 11 11 C 1.38384 * 119.72663 * 180.31211 * 10 9 7 12 12 N 1.40040 * 119.74252 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00008 * 325.16884 * 12 11 10 14 14 O 1.21584 * 120.00255 * 4.54532 * 13 12 11 15 15 N 1.34777 * 119.99729 * 184.54184 * 13 12 11 16 16 C 1.46499 * 119.99933 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47108 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99604 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00042 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00214 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46996 * 89.99756 * 21 19 17 23 23 H 1.48503 * 109.47055 * 209.99603 * 21 19 17 24 24 H 1.48502 * 109.46924 * 329.99843 * 21 19 17 25 25 H 1.09008 * 109.47114 * 270.00254 * 1 2 3 26 26 H 1.08995 * 109.47402 * 29.99837 * 1 2 3 27 27 H 1.08999 * 109.47645 * 150.00343 * 1 2 3 28 28 H 1.07998 * 120.07304 * 0.02562 * 3 2 1 29 29 H 1.07998 * 126.49166 * 359.97438 * 5 4 3 30 30 H 1.08001 * 125.03307 * 179.97438 * 6 5 4 31 31 H 1.08007 * 120.13170 * 0.32964 * 10 9 7 32 32 H 0.97003 * 119.99735 * 145.16988 * 12 11 10 33 33 H 0.96997 * 120.00098 * 0.02562 * 15 13 12 34 34 H 1.08996 * 109.47329 * 300.00704 * 16 15 13 35 35 H 1.09001 * 109.46763 * 60.00939 * 16 15 13 36 36 H 0.97003 * 120.00150 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1850 1.1854 0.0000 4 6 3.5813 1.1876 0.0005 5 6 4.5963 2.2448 0.0012 6 6 5.7939 1.6393 0.0009 7 7 5.6296 0.2796 -0.0051 8 1 6.3509 -0.3690 -0.0103 9 6 4.2876 -0.0293 0.0001 10 6 3.5826 -1.2277 -0.0005 11 6 2.1989 -1.2098 -0.0006 12 7 1.4885 -2.4166 -0.0017 13 6 1.9723 -3.4828 -0.6693 14 8 3.0641 -3.4229 -1.2011 15 7 1.2460 -4.6154 -0.7472 16 6 1.7716 -5.7741 -1.4732 17 6 0.7731 -6.9012 -1.4110 18 1 -0.1599 -6.7674 -0.8838 19 6 1.0507 -8.1029 -2.0272 20 7 2.1867 -8.2656 -2.6697 21 14 -0.1873 -9.4997 -1.9508 22 1 -1.1133 -9.4042 -3.1078 23 1 0.5295 -10.7995 -1.9963 24 1 -0.9622 -9.4057 -0.6874 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6424 2.1192 0.0004 29 1 4.4148 3.3094 0.0010 30 1 6.7462 2.1488 0.0009 31 1 4.1128 -2.1686 -0.0005 32 1 0.6481 -2.4851 0.4779 33 1 0.3749 -4.6631 -0.3232 34 1 1.9473 -5.5018 -2.5139 35 1 2.7091 -6.0934 -1.0179 36 1 2.3818 -9.1109 -3.1035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335694226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:07 Heat of formation + Delta-G solvation = 24.985382 kcal Electronic energy + Delta-G solvation = -19891.919129 eV Core-core repulsion = 16762.299943 eV Total energy + Delta-G solvation = -3129.619186 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.16725 -39.68060 -37.31202 -34.32247 -33.77248 -32.39902 -31.70557 -30.89235 -28.19201 -26.85045 -26.16774 -23.34224 -22.22588 -20.95870 -20.32352 -20.15451 -18.61819 -17.74309 -16.77719 -15.99763 -15.13417 -15.04802 -14.76419 -14.42149 -14.33031 -14.11947 -13.55026 -13.38442 -13.30589 -12.98912 -12.97628 -12.16748 -12.03903 -11.99796 -11.56571 -11.24318 -10.98866 -10.97612 -10.89291 -10.31583 -9.93682 -9.45097 -9.40781 -9.10478 -8.76159 -7.97494 -7.74025 -7.28766 -6.18121 -4.25036 1.30234 1.71053 2.79422 3.08608 3.23521 3.29295 3.31528 3.40180 3.74288 4.11837 4.30817 4.74494 4.92849 5.00640 5.10172 5.18208 5.27780 5.46206 5.50724 5.63533 5.65544 5.83135 5.94029 6.08666 6.19117 6.42093 6.58085 6.70001 6.88776 6.98156 7.08494 7.37843 7.41721 7.50253 7.51672 7.61541 7.83697 7.98578 8.69302 8.84308 9.21711 9.42554 10.92061 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034076 B = 0.003546 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.489950 B = 7893.803424 C = 8616.466513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.136 4.136 3 C -0.060 4.060 4 C -0.129 4.129 5 C -0.205 4.205 6 C 0.042 3.958 7 N -0.597 5.597 8 H 0.415 0.585 9 C 0.112 3.888 10 C -0.133 4.133 11 C 0.195 3.805 12 N -0.692 5.692 13 C 0.690 3.310 14 O -0.584 6.584 15 N -0.723 5.723 16 C 0.266 3.734 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.166 0.834 31 H 0.143 0.857 32 H 0.403 0.597 33 H 0.388 0.612 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 19.247 7.665 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C -0.079 4.079 4 C -0.134 4.134 5 C -0.230 4.230 6 C -0.084 4.084 7 N -0.200 5.200 8 H 0.251 0.749 9 C 0.005 3.995 10 C -0.157 4.157 11 C 0.098 3.902 12 N -0.340 5.340 13 C 0.390 3.610 14 O -0.462 6.462 15 N -0.374 5.374 16 C 0.145 3.855 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.183 0.817 31 H 0.160 0.840 32 H 0.238 0.762 33 H 0.221 0.779 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.038 18.947 7.006 20.304 hybrid contribution -0.966 -1.191 0.312 1.564 sum 1.073 17.757 7.318 19.235 Atomic orbital electron populations 1.20659 0.91139 1.02854 1.01849 1.19140 0.95893 0.91491 1.07415 1.19813 0.91569 0.96770 0.99740 1.19133 0.93164 0.92431 1.08668 1.21605 0.90791 0.97947 1.12658 1.21744 0.99495 0.82361 1.04847 1.41812 1.05886 1.06877 1.65418 0.74853 1.18042 0.83499 0.94771 1.03235 1.20131 0.92608 0.96413 1.06560 1.16832 0.89829 0.84114 0.99470 1.42767 1.26316 1.09926 1.54971 1.16171 0.84774 0.80363 0.79653 1.90861 1.20682 1.82549 1.52073 1.45762 1.21082 1.13000 1.57592 1.19038 0.94890 0.79962 0.91581 1.21210 1.03774 0.97469 1.35690 0.91867 1.24945 0.95654 0.98613 0.94793 1.69979 1.22790 1.25715 1.33768 0.86398 0.80799 0.81075 0.78526 1.20447 1.21005 1.19741 0.91619 0.91534 0.91711 0.86005 0.84026 0.81674 0.83974 0.76176 0.77942 0.95547 0.95572 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.44 36.00 0.34 -0.77 16 2 C -0.14 -1.83 5.86 -104.81 -0.61 -2.45 16 3 C -0.06 -0.77 9.67 -39.67 -0.38 -1.15 16 4 C -0.13 -1.81 6.37 -105.09 -0.67 -2.47 16 5 C -0.20 -2.31 11.08 -37.65 -0.42 -2.73 16 6 C 0.04 0.42 11.82 -16.69 -0.20 0.22 16 7 N -0.60 -7.12 6.08 -10.64 -0.06 -7.18 16 8 H 0.41 4.00 8.96 -40.82 -0.37 3.63 16 9 C 0.11 1.70 7.27 -84.00 -0.61 1.09 16 10 C -0.13 -2.29 8.71 -39.23 -0.34 -2.63 16 11 C 0.20 3.14 6.29 -83.63 -0.53 2.61 16 12 N -0.69 -11.02 4.73 -14.20 -0.07 -11.08 16 13 C 0.69 14.28 8.40 -86.92 -0.73 13.55 16 14 O -0.58 -14.34 13.74 5.29 0.07 -14.26 16 15 N -0.72 -15.24 5.55 -66.41 -0.37 -15.61 16 16 C 0.27 7.04 5.43 -5.19 -0.03 7.02 16 17 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 21 Si 0.90 20.74 29.54 -169.99 -5.02 15.71 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 25 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.06 0.68 7.13 -51.93 -0.37 0.31 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.14 2.74 6.18 -52.48 -0.32 2.41 16 32 H 0.40 4.99 7.83 -40.82 -0.32 4.67 16 33 H 0.39 6.90 8.34 -40.82 -0.34 6.56 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -33.84 310.34 -8.84 -42.69 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.21 Total: 11.33 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -4.60 Total: -1.01 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.24 Total: -59.13 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.07 Total: -14.26 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.84 -8.84 -42.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335694226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.671 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds