Wall clock time and date at job start Mon Mar 30 2020 01:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36556 * 119.76848 * 2 1 4 4 C 1.39633 * 119.85932 * 179.97438 * 3 2 1 5 5 C 1.46557 * 133.92404 * 180.02562 * 4 3 2 6 6 C 1.34195 * 107.01237 * 180.02562 * 5 4 3 7 7 N 1.36955 * 109.93080 * 0.23588 * 6 5 4 8 8 H 0.97006 * 125.07666 * 179.72445 * 7 6 5 9 9 C 1.37712 * 109.85462 * 359.59910 * 7 6 5 10 10 C 1.39030 * 133.43365 * 180.11024 * 9 7 6 11 11 C 1.38384 * 119.72663 * 180.31211 * 10 9 7 12 12 N 1.40040 * 119.74252 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00008 * 325.16884 * 12 11 10 14 14 O 1.21584 * 120.00255 * 4.54532 * 13 12 11 15 15 N 1.34777 * 119.99729 * 184.54184 * 13 12 11 16 16 C 1.46499 * 119.99933 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47108 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99604 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00042 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00214 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46996 * 89.99756 * 21 19 17 23 23 H 1.48503 * 109.47055 * 209.99603 * 21 19 17 24 24 H 1.48502 * 109.46924 * 329.99843 * 21 19 17 25 25 H 1.09008 * 109.47114 * 270.00254 * 1 2 3 26 26 H 1.08995 * 109.47402 * 29.99837 * 1 2 3 27 27 H 1.08999 * 109.47645 * 150.00343 * 1 2 3 28 28 H 1.07998 * 120.07304 * 0.02562 * 3 2 1 29 29 H 1.07998 * 126.49166 * 359.97438 * 5 4 3 30 30 H 1.08001 * 125.03307 * 179.97438 * 6 5 4 31 31 H 1.08007 * 120.13170 * 0.32964 * 10 9 7 32 32 H 0.97003 * 119.99735 * 145.16988 * 12 11 10 33 33 H 0.96997 * 120.00098 * 0.02562 * 15 13 12 34 34 H 1.08996 * 109.47329 * 300.00704 * 16 15 13 35 35 H 1.09001 * 109.46763 * 60.00939 * 16 15 13 36 36 H 0.97003 * 120.00150 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1850 1.1854 0.0000 4 6 3.5813 1.1876 0.0005 5 6 4.5963 2.2448 0.0012 6 6 5.7939 1.6393 0.0009 7 7 5.6296 0.2796 -0.0051 8 1 6.3509 -0.3690 -0.0103 9 6 4.2876 -0.0293 0.0001 10 6 3.5826 -1.2277 -0.0005 11 6 2.1989 -1.2098 -0.0006 12 7 1.4885 -2.4166 -0.0017 13 6 1.9723 -3.4828 -0.6693 14 8 3.0641 -3.4229 -1.2011 15 7 1.2460 -4.6154 -0.7472 16 6 1.7716 -5.7741 -1.4732 17 6 0.7731 -6.9012 -1.4110 18 1 -0.1599 -6.7674 -0.8838 19 6 1.0507 -8.1029 -2.0272 20 7 2.1867 -8.2656 -2.6697 21 14 -0.1873 -9.4997 -1.9508 22 1 -1.1133 -9.4042 -3.1078 23 1 0.5295 -10.7995 -1.9963 24 1 -0.9622 -9.4057 -0.6874 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6424 2.1192 0.0004 29 1 4.4148 3.3094 0.0010 30 1 6.7462 2.1488 0.0009 31 1 4.1128 -2.1686 -0.0005 32 1 0.6481 -2.4851 0.4779 33 1 0.3749 -4.6631 -0.3232 34 1 1.9473 -5.5018 -2.5139 35 1 2.7091 -6.0934 -1.0179 36 1 2.3818 -9.1109 -3.1035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335694226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:07 Heat of formation + Delta-G solvation = 1.051613 kcal Electronic energy + Delta-G solvation = -19892.956975 eV Core-core repulsion = 16762.299943 eV Total energy + Delta-G solvation = -3130.657032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.23169 -41.16344 -38.56061 -36.21781 -35.21802 -34.33082 -32.79937 -31.87698 -29.71540 -28.40383 -27.15638 -25.05432 -23.72526 -22.18611 -21.66154 -21.22977 -20.07579 -19.12871 -17.97527 -17.94044 -16.81068 -16.54593 -16.15466 -15.77690 -15.61471 -15.38574 -14.96811 -14.68057 -14.25624 -14.14337 -14.05486 -14.00702 -13.78250 -13.01079 -12.90791 -12.72965 -12.55431 -12.32947 -12.23241 -12.09438 -11.49052 -11.22043 -11.00923 -10.81453 -10.32323 -9.85754 -8.79858 -8.39708 -8.29510 -6.46162 0.21840 0.61757 1.43292 1.46263 1.56874 1.70530 1.86620 2.15634 2.34656 2.40737 2.95790 3.05772 3.42654 3.82247 4.05325 4.15915 4.37819 4.44991 4.60955 4.65085 4.86423 4.92227 5.01549 5.06367 5.08325 5.23550 5.26834 5.34222 5.45171 5.51063 5.58609 5.70851 5.81572 5.88111 5.92724 6.19956 6.28876 6.64840 6.73495 7.16929 7.24676 7.59552 8.82768 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034076 B = 0.003546 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.489950 B = 7893.803424 C = 8616.466513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.135 4.135 3 C -0.059 4.059 4 C -0.140 4.140 5 C -0.218 4.218 6 C 0.054 3.946 7 N -0.599 5.599 8 H 0.422 0.578 9 C 0.082 3.918 10 C -0.158 4.158 11 C 0.167 3.833 12 N -0.668 5.668 13 C 0.690 3.310 14 O -0.628 6.628 15 N -0.715 5.715 16 C 0.285 3.715 17 C -0.555 4.555 18 H 0.086 0.914 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.987 3.013 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.255 1.255 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.156 0.844 29 H 0.171 0.829 30 H 0.210 0.790 31 H 0.107 0.893 32 H 0.422 0.578 33 H 0.407 0.593 34 H -0.013 1.013 35 H -0.012 1.012 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 21.258 8.682 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C -0.078 4.078 4 C -0.145 4.145 5 C -0.243 4.243 6 C -0.071 4.071 7 N -0.202 5.202 8 H 0.259 0.741 9 C -0.026 4.026 10 C -0.182 4.182 11 C 0.070 3.930 12 N -0.318 5.318 13 C 0.390 3.610 14 O -0.509 6.509 15 N -0.368 5.368 16 C 0.162 3.838 17 C -0.593 4.593 18 H 0.104 0.896 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.810 3.190 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.178 1.178 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.173 0.827 29 H 0.188 0.812 30 H 0.227 0.773 31 H 0.125 0.875 32 H 0.260 0.740 33 H 0.243 0.757 34 H 0.005 0.995 35 H 0.006 0.994 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.158 21.019 8.078 22.518 hybrid contribution -0.253 -1.651 0.015 1.670 sum -0.095 19.368 8.093 20.991 Atomic orbital electron populations 1.20731 0.88578 1.03522 1.03439 1.19449 0.97680 0.90373 1.06346 1.20243 0.91467 0.97807 0.98287 1.19655 0.94243 0.92782 1.07834 1.22007 0.90194 0.98890 1.13181 1.22531 1.01232 0.81230 1.02130 1.42008 1.05099 1.08172 1.64954 0.74070 1.18165 0.85177 0.94650 1.04605 1.20019 0.93546 0.95973 1.08699 1.17127 0.89748 0.84740 1.01350 1.42373 1.26713 1.08755 1.53915 1.16291 0.84101 0.81020 0.79572 1.90839 1.22695 1.83431 1.53934 1.45308 1.21901 1.12052 1.57587 1.18460 0.93959 0.81827 0.89519 1.21593 1.04361 0.97510 1.35807 0.89646 1.26069 0.97716 1.01793 0.94004 1.70146 1.25258 1.26696 1.34856 0.85128 0.77865 0.76685 0.79352 1.19600 1.21006 1.17832 0.89460 0.89630 0.92282 0.82681 0.81166 0.77306 0.87524 0.73965 0.75714 0.99514 0.99416 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.44 71.24 0.67 -1.21 16 2 C -0.14 -3.46 5.86 -19.99 -0.12 -3.58 16 3 C -0.06 -1.40 9.67 22.21 0.21 -1.19 16 4 C -0.14 -3.72 6.37 -20.17 -0.13 -3.85 16 5 C -0.22 -4.32 11.08 23.52 0.26 -4.06 16 6 C 0.05 0.95 11.82 82.97 0.98 1.93 16 7 N -0.60 -14.08 6.08 -187.57 -1.14 -15.22 16 8 H 0.42 8.30 8.96 -92.70 -0.83 7.47 16 9 C 0.08 2.54 7.27 39.01 0.28 2.82 16 10 C -0.16 -5.79 8.71 22.49 0.20 -5.60 16 11 C 0.17 5.48 6.29 38.14 0.24 5.72 16 12 N -0.67 -21.73 4.73 -317.09 -1.50 -23.24 16 13 C 0.69 29.96 8.40 179.05 1.50 31.46 16 14 O -0.63 -33.20 13.74 -3.98 -0.05 -33.26 16 15 N -0.72 -31.19 5.55 -482.30 -2.68 -33.87 16 16 C 0.29 15.91 5.43 85.64 0.46 16.38 16 17 C -0.55 -30.24 9.28 25.60 0.24 -30.00 16 18 H 0.09 4.18 7.60 -2.91 -0.02 4.15 16 19 C 0.00 0.21 5.46 84.65 0.46 0.67 16 20 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 21 Si 0.99 42.27 29.54 68.60 2.03 44.30 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 25 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 27 H 0.06 1.12 7.13 -2.39 -0.02 1.11 16 28 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 29 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 30 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.11 4.57 6.18 -2.91 -0.02 4.55 16 32 H 0.42 10.18 7.83 -92.71 -0.73 9.46 16 33 H 0.41 14.40 8.34 -92.71 -0.77 13.63 16 34 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 36 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -78.23 310.34 1.02 -77.20 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -1.18 Total: 30.68 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 5.27 Total: 9.51 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -5.03 Total: -128.43 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.05 Total: -33.26 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -78.23 1.02 -77.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335694226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.256 kcal (2) G-P(sol) polarization free energy of solvation -78.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds