Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47217 * 2 1 4 4 H 1.09005 * 109.47329 * 305.26483 * 3 2 1 5 5 C 1.50705 * 109.47112 * 185.26546 * 3 2 1 6 6 H 1.07999 * 119.99488 * 245.25372 * 5 3 2 7 7 C 1.37877 * 119.99796 * 64.97146 * 5 3 2 8 8 N 1.31516 * 120.00098 * 6.91980 * 7 5 3 9 9 Si 1.86796 * 119.99825 * 186.91554 * 7 5 3 10 10 H 1.48502 * 109.47168 * 93.76857 * 9 7 5 11 11 H 1.48497 * 109.47321 * 213.77178 * 9 7 5 12 12 H 1.48500 * 109.47119 * 333.77206 * 9 7 5 13 13 N 1.46500 * 109.47221 * 65.26635 * 3 2 1 14 14 C 1.34780 * 119.99749 * 274.99929 * 13 3 2 15 15 O 1.21662 * 120.00075 * 359.97438 * 14 13 3 16 16 C 1.46934 * 119.99851 * 180.02562 * 14 13 3 17 17 C 1.36478 * 126.72403 * 359.68203 * 16 14 13 18 18 N 1.35362 * 109.76941 * 179.89138 * 17 16 14 19 19 H 0.97000 * 124.82293 * 180.11939 * 18 17 16 20 20 C 1.37859 * 110.35093 * 0.38838 * 18 17 16 21 21 C 1.39230 * 133.47576 * 179.77161 * 20 18 17 22 22 C 1.38331 * 118.29884 * 180.02562 * 21 20 18 23 23 C 1.38597 * 119.64422 * 0.02562 * 22 21 20 24 24 N 1.31635 * 121.19396 * 359.97438 * 23 22 21 25 25 C 1.32697 * 121.42370 * 0.02738 * 24 23 22 26 26 H 1.09004 * 109.46769 * 300.00342 * 1 2 3 27 27 H 1.09004 * 109.47298 * 59.99362 * 1 2 3 28 28 H 1.08996 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46769 * 239.99658 * 2 1 3 30 30 H 1.08997 * 109.47033 * 120.00033 * 2 1 3 31 31 H 0.97003 * 119.99849 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00183 * 95.00239 * 13 3 2 33 33 H 1.07990 * 125.11302 * 0.02562 * 17 16 14 34 34 H 1.08004 * 120.85201 * 0.03466 * 21 20 18 35 35 H 1.08003 * 120.18025 * 180.02562 * 22 21 20 36 36 H 1.07999 * 119.40404 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9829 -0.8391 5 6 3.5414 1.4444 -0.1304 6 1 4.1533 1.8105 0.6807 7 6 4.1339 0.9735 -1.2829 8 7 3.3915 0.6503 -2.3192 9 14 5.9911 0.7947 -1.3723 10 1 6.3734 -0.5914 -1.0009 11 1 6.4500 1.0809 -2.7553 12 1 6.6265 1.7523 -0.4318 13 7 1.6580 2.0955 1.2545 14 6 0.4412 2.6623 1.3758 15 8 -0.3397 2.6320 0.4434 16 6 0.0582 3.3178 2.6338 17 6 0.8190 3.4272 3.7616 18 7 0.1311 4.0988 4.7145 19 1 0.4673 4.3009 5.6016 20 6 -1.1175 4.4495 4.2471 21 6 -2.1948 5.1291 4.8093 22 6 -3.3291 5.3120 4.0388 23 6 -3.3645 4.8202 2.7435 24 7 -2.3359 4.1801 2.2289 25 6 -1.2259 3.9794 2.9277 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8084 0.3193 -3.1301 32 1 2.2807 2.1201 1.9978 33 1 1.8200 3.0385 3.8757 34 1 -2.1462 5.5039 5.8210 35 1 -4.1824 5.8352 4.4444 36 1 -4.2522 4.9649 2.1456 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346885311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = 28.419663 kcal Electronic energy + Delta-G solvation = -20448.150827 eV Core-core repulsion = 17318.680563 eV Total energy + Delta-G solvation = -3129.470264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.62391 -38.57985 -37.78873 -34.83174 -32.78864 -32.24091 -31.08425 -30.02407 -29.28155 -26.80531 -23.82109 -23.41471 -22.46094 -22.30252 -19.78880 -19.00274 -18.34789 -16.94119 -16.64558 -16.04658 -15.39014 -15.16013 -15.02821 -14.71427 -14.12215 -13.97041 -13.33658 -12.88650 -12.75700 -12.60922 -12.57407 -12.23971 -11.88101 -11.36833 -11.25213 -10.94759 -10.73061 -10.26929 -10.24518 -10.10075 -9.56551 -9.24563 -8.98903 -8.80487 -8.51702 -8.42072 -8.11436 -7.64396 -6.07524 -4.13811 0.89672 1.31849 2.17616 2.82369 3.27615 3.34686 3.36264 3.84738 4.10982 4.31818 4.35859 4.45487 4.58834 4.86862 4.90499 5.07115 5.25108 5.25589 5.44906 5.54906 5.95916 6.05383 6.26334 6.35804 6.47727 6.54497 6.74717 6.84760 7.12871 7.19013 7.31342 7.46801 7.57515 7.70689 7.83510 7.97209 8.17749 8.22203 8.81877 8.90233 9.34214 9.53882 11.00390 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031567 B = 0.004386 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.783024 B = 6383.074204 C = 6892.670084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.271 3.729 4 H 0.056 0.944 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.569 3.431 15 O -0.527 6.527 16 C -0.195 4.195 17 C 0.108 3.892 18 N -0.578 5.578 19 H 0.419 0.581 20 C 0.032 3.968 21 C -0.084 4.084 22 C -0.162 4.162 23 C 0.091 3.909 24 N -0.426 5.426 25 C 0.137 3.863 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.021 0.979 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.382 0.618 33 H 0.187 0.813 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 7.427 17.282 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.169 3.831 4 H 0.074 0.926 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.354 3.646 15 O -0.404 6.404 16 C -0.207 4.207 17 C -0.024 4.024 18 N -0.180 5.180 19 H 0.257 0.743 20 C -0.076 4.076 21 C -0.112 4.112 22 C -0.184 4.184 23 C -0.076 4.076 24 N -0.133 5.133 25 C 0.003 3.997 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.214 0.786 33 H 0.204 0.796 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.895 6.992 15.583 18.816 hybrid contribution 1.559 0.291 1.666 2.300 sum -6.336 7.283 17.249 19.766 Atomic orbital electron populations 1.21846 0.97970 0.97990 1.01772 1.21847 0.93010 0.99886 1.01096 1.18761 0.94178 0.88937 0.81213 0.92627 1.21206 0.90702 1.43499 1.01879 0.92187 1.24885 0.98300 0.95214 0.95170 1.69981 1.35250 1.43196 1.03221 0.86515 0.85253 0.78355 0.77411 1.20632 1.21177 1.19921 1.46319 1.14243 1.56868 1.18380 1.17081 0.82756 0.78987 0.85788 1.90808 1.50942 1.59093 1.39569 1.20507 0.93608 1.10208 0.96372 1.22268 0.97714 0.95029 0.87438 1.41305 1.12315 1.49146 1.15262 0.74318 1.19122 0.88140 1.03948 0.96401 1.20439 0.91328 0.99298 1.00170 1.21855 0.98223 1.02410 0.95862 1.22757 0.96683 0.94965 0.93171 1.67164 0.98563 1.11352 1.36180 1.19597 0.92966 0.98336 0.88827 0.93838 0.92945 0.96002 0.90066 0.94936 0.92635 0.78628 0.79594 0.85164 0.84476 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.52 37.16 0.32 -2.92 16 2 C -0.12 -2.94 5.49 -26.73 -0.15 -3.09 16 3 C 0.27 6.93 2.11 -69.08 -0.15 6.79 16 4 H 0.06 1.68 7.55 -51.93 -0.39 1.29 16 5 C -0.53 -14.13 8.67 -34.44 -0.30 -14.43 16 6 H 0.06 1.50 7.73 -52.49 -0.41 1.09 16 7 C 0.07 1.84 5.20 -17.82 -0.09 1.75 16 8 N -0.88 -25.15 12.00 55.43 0.67 -24.48 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -15.00 5.01 -56.16 -0.28 -15.28 16 14 C 0.57 12.35 6.37 -12.74 -0.08 12.27 16 15 O -0.53 -13.66 14.10 5.22 0.07 -13.59 16 16 C -0.20 -3.41 6.27 -103.28 -0.65 -4.06 16 17 C 0.11 1.29 11.33 -16.63 -0.19 1.10 16 18 N -0.58 -5.62 5.98 -10.46 -0.06 -5.68 16 19 H 0.42 2.27 8.96 -40.82 -0.37 1.91 16 20 C 0.03 0.41 7.27 -83.94 -0.61 -0.20 16 21 C -0.08 -0.84 10.19 -39.18 -0.40 -1.24 16 22 C -0.16 -1.62 10.09 -39.41 -0.40 -2.02 16 23 C 0.09 1.19 11.16 -17.50 -0.20 0.99 16 24 N -0.43 -7.71 10.41 -9.71 -0.10 -7.81 16 25 C 0.14 2.38 7.35 -82.92 -0.61 1.77 16 26 H 0.04 1.02 5.64 -51.93 -0.29 0.72 16 27 H 0.05 1.32 7.86 -51.93 -0.41 0.91 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 2.19 6.65 -51.93 -0.35 1.84 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.38 6.68 7.40 -40.82 -0.30 6.38 16 33 H 0.19 1.52 7.37 -52.49 -0.39 1.13 16 34 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 36 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 306.33 15.07 4.62 4.62 Total: -1.00 -35.64 306.33 -7.76 -43.40 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.15 Total: 6.52 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.50 Total: -3.30 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.22 Total: -53.25 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.07 Total: -13.59 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.64 -7.76 -43.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346885311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.817 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds