Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47217 * 2 1 4 4 H 1.09005 * 109.47329 * 305.26483 * 3 2 1 5 5 C 1.50705 * 109.47112 * 185.26546 * 3 2 1 6 6 H 1.07999 * 119.99488 * 245.25372 * 5 3 2 7 7 C 1.37877 * 119.99796 * 64.97146 * 5 3 2 8 8 N 1.31516 * 120.00098 * 6.91980 * 7 5 3 9 9 Si 1.86796 * 119.99825 * 186.91554 * 7 5 3 10 10 H 1.48502 * 109.47168 * 93.76857 * 9 7 5 11 11 H 1.48497 * 109.47321 * 213.77178 * 9 7 5 12 12 H 1.48500 * 109.47119 * 333.77206 * 9 7 5 13 13 N 1.46500 * 109.47221 * 65.26635 * 3 2 1 14 14 C 1.34780 * 119.99749 * 274.99929 * 13 3 2 15 15 O 1.21662 * 120.00075 * 359.97438 * 14 13 3 16 16 C 1.46934 * 119.99851 * 180.02562 * 14 13 3 17 17 C 1.36478 * 126.72403 * 359.68203 * 16 14 13 18 18 N 1.35362 * 109.76941 * 179.89138 * 17 16 14 19 19 H 0.97000 * 124.82293 * 180.11939 * 18 17 16 20 20 C 1.37859 * 110.35093 * 0.38838 * 18 17 16 21 21 C 1.39230 * 133.47576 * 179.77161 * 20 18 17 22 22 C 1.38331 * 118.29884 * 180.02562 * 21 20 18 23 23 C 1.38597 * 119.64422 * 0.02562 * 22 21 20 24 24 N 1.31635 * 121.19396 * 359.97438 * 23 22 21 25 25 C 1.32697 * 121.42370 * 0.02738 * 24 23 22 26 26 H 1.09004 * 109.46769 * 300.00342 * 1 2 3 27 27 H 1.09004 * 109.47298 * 59.99362 * 1 2 3 28 28 H 1.08996 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46769 * 239.99658 * 2 1 3 30 30 H 1.08997 * 109.47033 * 120.00033 * 2 1 3 31 31 H 0.97003 * 119.99849 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00183 * 95.00239 * 13 3 2 33 33 H 1.07990 * 125.11302 * 0.02562 * 17 16 14 34 34 H 1.08004 * 120.85201 * 0.03466 * 21 20 18 35 35 H 1.08003 * 120.18025 * 180.02562 * 22 21 20 36 36 H 1.07999 * 119.40404 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9829 -0.8391 5 6 3.5414 1.4444 -0.1304 6 1 4.1533 1.8105 0.6807 7 6 4.1339 0.9735 -1.2829 8 7 3.3915 0.6503 -2.3192 9 14 5.9911 0.7947 -1.3723 10 1 6.3734 -0.5914 -1.0009 11 1 6.4500 1.0809 -2.7553 12 1 6.6265 1.7523 -0.4318 13 7 1.6580 2.0955 1.2545 14 6 0.4412 2.6623 1.3758 15 8 -0.3397 2.6320 0.4434 16 6 0.0582 3.3178 2.6338 17 6 0.8190 3.4272 3.7616 18 7 0.1311 4.0988 4.7145 19 1 0.4673 4.3009 5.6016 20 6 -1.1175 4.4495 4.2471 21 6 -2.1948 5.1291 4.8093 22 6 -3.3291 5.3120 4.0388 23 6 -3.3645 4.8202 2.7435 24 7 -2.3359 4.1801 2.2289 25 6 -1.2259 3.9794 2.9277 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8084 0.3193 -3.1301 32 1 2.2807 2.1201 1.9978 33 1 1.8200 3.0385 3.8757 34 1 -2.1462 5.5039 5.8210 35 1 -4.1824 5.8352 4.4444 36 1 -4.2522 4.9649 2.1456 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346885311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = 0.926533 kcal Electronic energy + Delta-G solvation = -20449.343019 eV Core-core repulsion = 17318.680563 eV Total energy + Delta-G solvation = -3130.662456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.60312 -40.23006 -38.80883 -36.75446 -34.24999 -33.75142 -32.86056 -31.10176 -30.41210 -28.74290 -25.26518 -24.70763 -23.92638 -23.39401 -21.61262 -20.65950 -19.36350 -18.39937 -17.87693 -17.10683 -16.99018 -16.84182 -16.34531 -15.89211 -15.66338 -15.55450 -14.62967 -14.55203 -14.05829 -13.75908 -13.66923 -13.52788 -13.37703 -13.24883 -13.19467 -12.84478 -12.59760 -12.15273 -12.03903 -11.59999 -11.21097 -11.02687 -10.67786 -10.49284 -10.11113 -9.59050 -9.46265 -9.07993 -8.13678 -6.28421 -0.01209 0.35568 1.09935 1.47316 1.48234 1.58881 1.97982 2.40515 2.59167 2.75986 3.08301 3.18110 3.37942 3.75001 3.96048 4.04718 4.16853 4.39199 4.48908 4.55795 4.57709 4.69373 4.74527 4.85799 5.09293 5.17701 5.26277 5.29346 5.38966 5.47109 5.59302 5.68599 5.79907 5.91913 6.03123 6.13702 6.50985 6.81510 7.15934 7.27200 7.39066 7.77632 8.95115 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031567 B = 0.004386 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.783024 B = 6383.074204 C = 6892.670084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.545 4.545 6 H 0.078 0.922 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.972 3.028 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.259 1.259 13 N -0.703 5.703 14 C 0.567 3.433 15 O -0.587 6.587 16 C -0.266 4.266 17 C 0.160 3.840 18 N -0.547 5.547 19 H 0.446 0.554 20 C 0.027 3.973 21 C -0.068 4.068 22 C -0.154 4.154 23 C 0.078 3.922 24 N -0.499 5.499 25 C 0.092 3.908 26 H 0.040 0.960 27 H 0.020 0.980 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.263 0.737 32 H 0.402 0.598 33 H 0.229 0.771 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 8.486 21.833 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.583 4.583 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.558 5.558 9 Si 0.796 3.204 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.183 1.183 13 N -0.352 5.352 14 C 0.356 3.644 15 O -0.468 6.468 16 C -0.277 4.277 17 C 0.023 3.977 18 N -0.151 5.151 19 H 0.289 0.711 20 C -0.081 4.081 21 C -0.096 4.096 22 C -0.175 4.175 23 C -0.088 4.088 24 N -0.208 5.208 25 C -0.041 4.041 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.237 0.763 33 H 0.245 0.755 34 H 0.197 0.803 35 H 0.199 0.801 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.784 8.083 20.241 22.827 hybrid contribution 1.083 0.065 0.332 1.135 sum -5.701 8.148 20.573 22.851 Atomic orbital electron populations 1.21661 0.97301 0.98923 1.00115 1.21691 0.93461 0.99265 1.00516 1.18329 0.93870 0.88871 0.81414 0.98757 1.21581 0.91092 1.43159 1.02443 0.90411 1.25839 1.03380 0.94777 0.94696 1.70158 1.37497 1.44291 1.03905 0.85348 0.78987 0.78815 0.77239 1.19758 1.21713 1.18270 1.45983 1.14914 1.56811 1.17512 1.17714 0.81811 0.78013 0.86868 1.90759 1.52537 1.61377 1.42162 1.20172 0.96225 1.14818 0.96535 1.22690 0.97961 0.91538 0.85513 1.41259 1.10999 1.47035 1.15830 0.71113 1.19254 0.89743 1.04245 0.94886 1.21033 0.89713 0.96964 1.01882 1.22297 0.99724 1.01206 0.94240 1.23252 0.96090 0.94276 0.95139 1.67043 1.00432 1.14411 1.38869 1.19908 0.92986 1.00004 0.91242 0.94054 0.96105 0.93476 0.92757 0.93020 0.92769 0.76286 0.75464 0.80311 0.80077 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.52 71.98 0.61 -5.44 16 2 C -0.11 -5.64 5.49 30.59 0.17 -5.47 16 3 C 0.28 14.95 2.11 44.25 0.09 15.04 16 4 H -0.01 -0.36 7.55 -2.38 -0.02 -0.38 16 5 C -0.54 -29.12 8.67 25.60 0.22 -28.90 16 6 H 0.08 3.78 7.73 -2.91 -0.02 3.76 16 7 C 0.01 0.71 5.20 84.65 0.44 1.15 16 8 N -0.92 -54.79 12.00 21.45 0.26 -54.54 16 9 Si 0.97 42.33 29.54 68.60 2.03 44.35 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 13 N -0.70 -30.50 5.01 -449.82 -2.25 -32.75 16 14 C 0.57 25.98 6.37 86.52 0.55 26.53 16 15 O -0.59 -33.20 14.10 -4.23 -0.06 -33.26 16 16 C -0.27 -9.38 6.27 -19.00 -0.12 -9.50 16 17 C 0.16 3.32 11.33 83.74 0.95 4.27 16 18 N -0.55 -8.37 5.98 -187.01 -1.12 -9.49 16 19 H 0.45 2.27 8.96 -92.71 -0.83 1.44 16 20 C 0.03 0.61 7.27 38.98 0.28 0.89 16 21 C -0.07 -1.06 10.19 22.53 0.23 -0.83 16 22 C -0.15 -2.57 10.09 22.38 0.23 -2.34 16 23 C 0.08 2.04 11.16 84.81 0.95 2.98 16 24 N -0.50 -18.99 10.41 -184.62 -1.92 -20.91 16 25 C 0.09 3.22 7.35 41.98 0.31 3.53 16 26 H 0.04 2.03 5.64 -2.39 -0.01 2.02 16 27 H 0.02 1.10 7.86 -2.38 -0.02 1.09 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 3.06 6.65 -2.39 -0.02 3.05 16 30 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.40 13.69 7.40 -92.71 -0.69 13.00 16 33 H 0.23 2.63 7.37 -2.92 -0.02 2.61 16 34 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 35 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.17 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -87.90 306.33 1.45 -86.45 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.39 Total: 18.23 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 4.91 Total: 1.91 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -5.04 Total: -117.69 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.06 Total: -33.26 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -87.90 1.45 -86.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346885311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.374 kcal (2) G-P(sol) polarization free energy of solvation -87.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds