Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21664 * 120.00124 * 0.02562 * 14 13 3 16 16 C 1.46932 * 119.99854 * 180.02562 * 14 13 3 17 17 C 1.36352 * 126.82727 * 359.68416 * 16 14 13 18 18 N 1.35585 * 109.74642 * 179.83016 * 17 16 14 19 19 H 0.97001 * 124.71407 * 180.18030 * 18 17 16 20 20 C 1.37686 * 110.56086 * 0.45580 * 18 17 16 21 21 N 1.32673 * 132.95001 * 179.71075 * 20 18 17 22 22 C 1.31613 * 121.69323 * 180.02562 * 21 20 18 23 23 C 1.38584 * 121.53794 * 0.02562 * 22 21 20 24 24 C 1.38341 * 119.32985 * 359.96315 * 23 22 21 25 25 C 1.39341 * 118.05153 * 0.04005 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 33 33 H 1.07996 * 125.12760 * 359.97438 * 17 16 14 34 34 H 1.07991 * 119.22849 * 179.97438 * 22 21 20 35 35 H 1.08004 * 120.33527 * 179.97438 * 23 22 21 36 36 H 1.07998 * 120.97134 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3420 2.6318 0.4315 16 6 0.0467 3.3217 2.6223 17 6 0.8001 3.4340 3.7532 18 7 0.1052 4.1096 4.7014 19 1 0.4377 4.3141 5.5893 20 6 -1.1405 4.4595 4.2305 21 7 -2.1622 5.1093 4.7729 22 6 -3.2762 5.3258 4.1064 23 6 -3.4383 4.8847 2.8027 24 6 -2.4060 4.2013 2.1852 25 6 -1.2369 3.9845 2.9116 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 1.8004 3.0456 3.8746 34 1 -4.0831 5.8588 4.5870 35 1 -4.3611 5.0727 2.2739 36 1 -2.5036 3.8461 1.1700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358079013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = 28.105267 kcal Electronic energy + Delta-G solvation = -20465.214469 eV Core-core repulsion = 17335.730571 eV Total energy + Delta-G solvation = -3129.483898 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60838 -38.73030 -37.75251 -34.98274 -32.84575 -32.38062 -31.09166 -30.09721 -29.14319 -26.85611 -23.77367 -23.47822 -22.45167 -22.35878 -19.77808 -19.12498 -18.48180 -16.78631 -16.69839 -15.94247 -15.42295 -15.24392 -15.08880 -14.69359 -14.25692 -14.09083 -13.30141 -12.93958 -12.87335 -12.65039 -12.42072 -11.98353 -11.92186 -11.48136 -11.23230 -10.98768 -10.81893 -10.32526 -10.28544 -10.14911 -9.61365 -9.54695 -9.04892 -8.96992 -8.54745 -8.48401 -8.10853 -7.73438 -6.11517 -4.21048 0.94178 1.32499 2.20071 2.64806 3.25195 3.31021 3.31577 3.81212 4.09999 4.18816 4.37518 4.48007 4.66264 4.87095 5.00037 5.19627 5.19891 5.36621 5.49716 5.82581 5.89545 6.26697 6.37904 6.42935 6.47219 6.50677 6.70670 6.86507 7.08442 7.13082 7.24486 7.40162 7.48899 7.63671 7.76954 7.92451 7.94280 8.20032 8.70428 8.80287 9.19108 9.46655 10.93747 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031675 B = 0.004366 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.756116 B = 6410.990638 C = 6930.704725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.705 5.705 14 C 0.573 3.427 15 O -0.548 6.548 16 C -0.200 4.200 17 C 0.104 3.896 18 N -0.570 5.570 19 H 0.421 0.579 20 C 0.274 3.726 21 N -0.501 5.501 22 C 0.131 3.869 23 C -0.203 4.203 24 C -0.014 4.014 25 C -0.110 4.110 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.384 0.616 33 H 0.187 0.813 34 H 0.159 0.841 35 H 0.137 0.863 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 6.492 12.796 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.352 5.352 14 C 0.359 3.641 15 O -0.427 6.427 16 C -0.211 4.211 17 C -0.027 4.027 18 N -0.175 5.175 19 H 0.259 0.741 20 C 0.042 3.958 21 N -0.215 5.215 22 C -0.034 4.034 23 C -0.225 4.225 24 C -0.040 4.040 25 C -0.117 4.117 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.216 0.784 33 H 0.204 0.796 34 H 0.176 0.824 35 H 0.155 0.845 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.967 6.644 12.864 16.526 hybrid contribution 1.454 -0.242 -0.087 1.476 sum -6.513 6.402 12.777 15.706 Atomic orbital electron populations 1.21843 0.98318 0.97976 1.01351 1.21930 0.92660 0.99790 1.02206 1.18777 0.94091 0.89154 0.80938 0.93183 1.21190 0.90730 1.39106 1.06305 0.92188 1.24877 0.98506 0.94827 0.95401 1.69887 1.35180 1.37515 1.09298 0.86531 0.84966 0.78276 0.77443 1.20206 1.21151 1.20222 1.46349 1.14261 1.56139 1.18482 1.17119 0.82706 0.78639 0.85669 1.90735 1.51623 1.60498 1.39868 1.20490 0.94852 1.09788 0.95986 1.22213 0.97561 0.95353 0.87571 1.41247 1.11578 1.48959 1.15705 0.74118 1.18361 0.87681 0.98995 0.90761 1.66456 0.99825 1.16576 1.38609 1.22389 0.93002 0.96369 0.91633 1.21936 1.00558 1.03100 0.96895 1.21211 0.90060 0.92614 1.00148 1.19500 0.95312 1.02551 0.94315 0.93134 0.94145 0.95970 0.95096 0.88334 0.92513 0.78359 0.79592 0.82368 0.84489 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.05 5.45 -26.74 -0.15 -3.20 16 3 C 0.27 6.72 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.79 8.73 -34.44 -0.30 -14.09 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.39 11.30 55.43 0.63 -23.76 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.23 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.23 5.01 -56.17 -0.28 -14.51 16 14 C 0.57 11.52 6.36 -12.74 -0.08 11.44 16 15 O -0.55 -12.79 13.39 5.22 0.07 -12.72 16 16 C -0.20 -3.27 6.27 -103.36 -0.65 -3.92 16 17 C 0.10 1.25 11.34 -16.57 -0.19 1.06 16 18 N -0.57 -6.36 5.97 -11.97 -0.07 -6.43 16 19 H 0.42 3.24 8.96 -40.82 -0.37 2.87 16 20 C 0.27 3.91 8.41 -155.53 -1.31 2.60 16 21 N -0.50 -6.83 10.39 -12.29 -0.13 -6.95 16 22 C 0.13 1.49 11.15 -17.52 -0.20 1.29 16 23 C -0.20 -2.36 10.10 -39.42 -0.40 -2.76 16 24 C -0.01 -0.21 9.97 -39.13 -0.39 -0.60 16 25 C -0.11 -1.76 6.28 -104.93 -0.66 -2.42 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 27 H 0.04 0.89 5.64 -51.93 -0.29 0.59 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.38 6.50 7.43 -40.82 -0.30 6.19 16 33 H 0.19 1.54 7.38 -52.49 -0.39 1.15 16 34 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.15 2.27 7.55 -52.49 -0.40 1.87 16 LS Contribution 303.80 15.07 4.58 4.58 Total: -1.00 -32.30 303.80 -8.56 -40.86 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.09 Total: 8.83 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -4.25 Total: -5.12 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.15 Total: -51.67 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.07 Total: -12.72 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.30 -8.56 -40.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358079013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.966 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds