Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21664 * 120.00124 * 0.02562 * 14 13 3 16 16 C 1.46932 * 119.99854 * 180.02562 * 14 13 3 17 17 C 1.36352 * 126.82727 * 359.68416 * 16 14 13 18 18 N 1.35585 * 109.74642 * 179.83016 * 17 16 14 19 19 H 0.97001 * 124.71407 * 180.18030 * 18 17 16 20 20 C 1.37686 * 110.56086 * 0.45580 * 18 17 16 21 21 N 1.32673 * 132.95001 * 179.71075 * 20 18 17 22 22 C 1.31613 * 121.69323 * 180.02562 * 21 20 18 23 23 C 1.38584 * 121.53794 * 0.02562 * 22 21 20 24 24 C 1.38341 * 119.32985 * 359.96315 * 23 22 21 25 25 C 1.39341 * 118.05153 * 0.04005 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 33 33 H 1.07996 * 125.12760 * 359.97438 * 17 16 14 34 34 H 1.07991 * 119.22849 * 179.97438 * 22 21 20 35 35 H 1.08004 * 120.33527 * 179.97438 * 23 22 21 36 36 H 1.07998 * 120.97134 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3420 2.6318 0.4315 16 6 0.0467 3.3217 2.6223 17 6 0.8001 3.4340 3.7532 18 7 0.1052 4.1096 4.7014 19 1 0.4377 4.3141 5.5893 20 6 -1.1405 4.4595 4.2305 21 7 -2.1622 5.1093 4.7729 22 6 -3.2762 5.3258 4.1064 23 6 -3.4383 4.8847 2.8027 24 6 -2.4060 4.2013 2.1852 25 6 -1.2369 3.9845 2.9116 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 1.8004 3.0456 3.8746 34 1 -4.0831 5.8588 4.5870 35 1 -4.3611 5.0727 2.2739 36 1 -2.5036 3.8461 1.1700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358079013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = 6.130534 kcal Electronic energy + Delta-G solvation = -20466.167365 eV Core-core repulsion = 17335.730571 eV Total energy + Delta-G solvation = -3130.436794 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.64620 -40.30301 -38.79267 -36.82006 -34.27244 -33.89631 -32.85510 -31.18049 -30.33931 -28.71146 -25.26573 -24.74805 -23.93594 -23.43791 -21.57276 -20.71289 -19.56189 -18.44438 -17.80248 -17.11043 -16.96518 -16.76891 -16.41270 -15.94402 -15.73241 -15.59572 -14.67981 -14.56227 -14.20199 -13.85909 -13.79922 -13.46604 -13.24947 -13.13662 -12.98545 -12.83359 -12.61990 -12.15928 -12.02123 -11.56154 -11.37650 -11.02331 -10.84266 -10.49643 -10.34521 -9.62966 -9.52021 -9.08679 -8.11716 -6.28998 -0.09787 0.32144 1.03972 1.47930 1.49756 1.57249 1.71400 2.39374 2.58278 2.72055 2.95382 3.18050 3.54242 3.71342 3.79589 4.07245 4.19873 4.41575 4.51478 4.53510 4.60743 4.61628 4.82066 4.89797 5.11216 5.23660 5.30063 5.36730 5.43016 5.48489 5.60953 5.68307 5.84727 5.85747 6.00130 6.21327 6.29718 6.79233 6.97094 7.10926 7.38465 7.68779 8.93574 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031675 B = 0.004366 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.756116 B = 6410.990638 C = 6930.704725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.573 3.427 15 O -0.593 6.593 16 C -0.254 4.254 17 C 0.152 3.848 18 N -0.549 5.549 19 H 0.441 0.559 20 C 0.259 3.741 21 N -0.508 5.508 22 C 0.132 3.868 23 C -0.187 4.187 24 C -0.049 4.049 25 C -0.137 4.137 26 H 0.024 0.976 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.230 0.770 34 H 0.202 0.798 35 H 0.169 0.831 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 7.328 15.865 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.187 1.187 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.349 5.349 14 C 0.362 3.638 15 O -0.476 6.476 16 C -0.265 4.265 17 C 0.018 3.982 18 N -0.156 5.156 19 H 0.283 0.717 20 C 0.028 3.972 21 N -0.221 5.221 22 C -0.033 4.033 23 C -0.207 4.207 24 C -0.075 4.075 25 C -0.144 4.144 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.246 0.754 34 H 0.219 0.781 35 H 0.186 0.814 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.310 7.508 16.014 19.138 hybrid contribution 1.132 -0.423 -0.991 1.563 sum -6.179 7.085 15.023 17.722 Atomic orbital electron populations 1.21669 0.97270 0.98894 1.00161 1.21779 0.93484 0.99289 1.01320 1.18339 0.93639 0.89020 0.81291 0.98610 1.21565 0.91309 1.38831 1.06766 0.90655 1.25773 1.03218 0.94445 0.95061 1.70056 1.37113 1.38431 1.09849 0.85434 0.79206 0.78379 0.77507 1.18726 1.21516 1.19730 1.46017 1.15010 1.56254 1.17612 1.17613 0.81831 0.77811 0.86570 1.90703 1.52807 1.62143 1.41913 1.20099 0.96847 1.13578 0.96024 1.22720 0.97939 0.91852 0.85686 1.41255 1.10447 1.47522 1.16337 0.71697 1.18519 0.88868 0.99561 0.90295 1.66594 1.00220 1.16469 1.38846 1.23138 0.93259 0.95492 0.91412 1.22294 1.00517 1.00804 0.97103 1.21271 0.91562 0.94896 0.99798 1.19780 0.95635 1.03320 0.95640 0.95688 0.93972 0.93786 0.93870 0.91041 0.92706 0.76231 0.75385 0.78145 0.81360 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 14.32 2.24 44.24 0.10 14.42 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.26 16 5 C -0.55 -28.31 8.73 25.60 0.22 -28.09 16 6 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.80 5.29 84.65 0.45 1.25 16 8 N -0.92 -52.26 11.30 21.45 0.24 -52.02 16 9 Si 0.97 41.36 29.54 68.60 2.03 43.39 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 13 N -0.70 -28.54 5.01 -449.84 -2.25 -30.79 16 14 C 0.57 23.78 6.36 86.52 0.55 24.33 16 15 O -0.59 -29.59 13.39 -4.23 -0.06 -29.65 16 16 C -0.25 -8.27 6.27 -19.05 -0.12 -8.39 16 17 C 0.15 3.22 11.34 83.67 0.95 4.17 16 18 N -0.55 -10.60 5.97 -191.79 -1.15 -11.75 16 19 H 0.44 5.05 8.96 -92.71 -0.83 4.22 16 20 C 0.26 6.93 8.41 133.77 1.13 8.05 16 21 N -0.51 -12.54 10.39 -192.80 -2.00 -14.55 16 22 C 0.13 2.62 11.15 84.81 0.95 3.56 16 23 C -0.19 -4.05 10.10 22.38 0.23 -3.82 16 24 C -0.05 -1.49 9.97 22.56 0.23 -1.26 16 25 C -0.14 -4.41 6.28 -20.06 -0.13 -4.53 16 26 H 0.02 1.24 7.84 -2.39 -0.02 1.22 16 27 H 0.04 1.91 5.64 -2.39 -0.01 1.90 16 28 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 3.95 5.95 -2.39 -0.01 3.94 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.40 13.04 7.43 -92.71 -0.69 12.35 16 33 H 0.23 2.72 7.38 -2.91 -0.02 2.70 16 34 H 0.20 2.15 8.06 -2.92 -0.02 2.13 16 35 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.12 4.20 7.55 -2.91 -0.02 4.18 16 Total: -1.00 -74.74 303.80 1.75 -72.99 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.39 Total: 23.49 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 5.33 Total: -1.12 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -5.16 Total: -109.10 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.06 Total: -29.65 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -74.74 1.75 -72.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358079013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.125 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds