Wall clock time and date at job start Mon Mar 30 2020 01:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46940 * 132.23532 * 3 2 1 5 5 C 1.36793 * 120.00217 * 83.31173 * 4 3 2 6 6 H 1.08002 * 120.00471 * 166.11381 * 5 4 3 7 7 C 1.39107 * 119.99816 * 346.10894 * 5 4 3 8 8 N 1.31326 * 119.99721 * 359.69117 * 7 5 4 9 9 Si 1.86800 * 120.00286 * 179.68788 * 7 5 4 10 10 H 1.48495 * 109.46984 * 59.99835 * 9 7 5 11 11 H 1.48492 * 109.47027 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46840 * 300.00488 * 9 7 5 13 13 C 1.34780 * 119.99967 * 263.30426 * 4 3 2 14 14 O 1.21560 * 119.99859 * 184.41905 * 13 4 3 15 15 C 1.47982 * 120.00020 * 4.41728 * 13 4 3 16 16 C 1.40202 * 121.15354 * 301.24865 * 15 13 4 17 17 C 1.38458 * 117.81278 * 180.25322 * 16 15 13 18 18 C 1.50693 * 120.01028 * 179.72713 * 17 16 15 19 19 C 1.53005 * 109.47233 * 125.00133 * 18 17 16 20 20 N 1.31947 * 119.97302 * 359.43851 * 17 16 15 21 21 N 1.28271 * 122.54237 * 0.58784 * 20 17 16 22 22 C 1.31896 * 122.33455 * 359.69839 * 21 20 17 23 23 C 1.50694 * 120.17940 * 179.97438 * 22 21 20 24 24 H 4.40632 * 5.51471 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.47037 * 12.23558 * 3 2 1 26 26 H 1.09002 * 109.47126 * 252.23702 * 3 2 1 27 27 H 0.97003 * 119.99884 * 179.97438 * 8 7 5 28 28 H 1.08000 * 121.09536 * 359.97438 * 16 15 13 29 29 H 1.08996 * 109.47178 * 244.99821 * 18 17 16 30 30 H 1.09006 * 109.47366 * 4.99872 * 18 17 16 31 31 H 1.08996 * 109.47038 * 180.02562 * 19 18 17 32 32 H 1.09005 * 109.46859 * 299.99726 * 19 18 17 33 33 H 1.08994 * 109.46785 * 59.99789 * 19 18 17 34 34 H 1.09000 * 109.47834 * 274.50247 * 23 22 21 35 35 H 1.09002 * 109.46846 * 34.50664 * 23 22 21 36 36 H 1.09002 * 109.47012 * 154.49967 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 0.9293 -1.0226 5 6 3.2311 2.2649 -0.7433 6 1 3.7916 2.9144 -1.3993 7 6 2.6080 2.7864 0.3858 8 7 1.9214 1.9977 1.1802 9 14 2.7481 4.6087 0.7721 10 1 2.1776 5.3976 -0.3492 11 1 2.0010 4.9090 2.0198 12 1 4.1777 4.9678 0.9530 13 6 3.4869 0.4677 -2.2387 14 8 3.9670 1.2244 -3.0601 15 6 3.2903 -0.9602 -2.5739 16 6 3.8972 -1.9729 -1.8178 17 6 3.6705 -3.2854 -2.1960 18 6 4.3034 -4.4129 -1.4219 19 6 3.2172 -5.3845 -0.9561 20 7 2.8956 -3.5488 -3.2310 21 7 2.3373 -2.6273 -3.9271 22 6 2.4924 -1.3460 -3.6554 23 6 1.8139 -0.3036 -4.5062 24 1 -1.0502 0.0000 0.0003 25 1 3.0097 -1.0035 -0.2178 26 1 3.0091 0.3143 0.9787 27 1 1.4872 2.3613 1.9677 28 1 4.5245 -1.7369 -0.9709 29 1 5.0121 -4.9395 -2.0611 30 1 4.8264 -4.0096 -0.5547 31 1 3.6749 -6.1997 -0.3958 32 1 2.5085 -4.8579 -0.3169 33 1 2.6943 -5.7877 -1.8233 34 1 2.4371 -0.0792 -5.3719 35 1 0.8480 -0.6811 -4.8419 36 1 1.6658 0.6035 -3.9202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490972309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:39 Heat of formation + Delta-G solvation = 90.404177 kcal Electronic energy + Delta-G solvation = -21068.836825 eV Core-core repulsion = 17942.054411 eV Total energy + Delta-G solvation = -3126.782414 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93639 -38.64954 -35.60996 -34.90049 -33.21989 -32.00455 -31.54836 -31.14012 -27.64282 -26.66029 -25.91955 -24.36030 -23.06809 -22.11253 -19.61682 -18.14217 -17.23255 -16.88119 -16.42003 -15.58501 -15.20994 -14.90743 -14.39967 -14.25378 -14.08355 -13.82152 -13.19128 -12.97743 -12.69796 -12.46749 -12.35502 -12.08242 -11.88580 -11.72694 -11.49587 -11.20936 -11.15764 -10.71880 -10.56732 -10.45677 -9.77888 -9.66306 -9.60300 -9.33353 -9.11280 -8.87401 -8.60232 -8.16027 -6.49369 -4.10088 0.95217 1.18199 3.02188 3.12016 3.14334 3.41482 3.63981 3.90742 3.97792 4.10693 4.20583 4.47614 4.69425 4.82855 4.89745 4.98243 5.14425 5.27214 5.38002 5.41785 5.56765 5.66152 5.83193 5.87267 5.89802 5.97103 6.08919 6.16153 6.24340 6.28427 6.46780 6.60999 6.77878 7.00272 7.30784 7.73141 8.16736 8.80412 8.85318 9.02856 9.06265 9.58469 10.41438 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.006233 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.128611 B = 4490.968400 C = 4928.140326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.096 4.096 3 C 0.221 3.779 4 N -0.418 5.418 5 C -0.304 4.304 6 H 0.111 0.889 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.475 3.525 14 O -0.571 6.571 15 C -0.079 4.079 16 C -0.106 4.106 17 C 0.059 3.941 18 C -0.065 4.065 19 C -0.145 4.145 20 N -0.244 5.244 21 N -0.245 5.245 22 C 0.097 3.903 23 C -0.095 4.095 24 H 0.198 0.802 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.274 0.726 28 H 0.151 0.849 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -8.414 0.368 8.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.098 4.098 3 C 0.099 3.901 4 N -0.134 5.134 5 C -0.432 4.432 6 H 0.129 0.871 7 C -0.173 4.173 8 N -0.502 5.502 9 Si 0.764 3.236 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.263 3.737 14 O -0.455 6.455 15 C -0.094 4.094 16 C -0.135 4.135 17 C -0.085 4.085 18 C -0.104 4.104 19 C -0.203 4.203 20 N -0.087 5.087 21 N -0.087 5.087 22 C -0.047 4.047 23 C -0.153 4.153 24 H 0.215 0.785 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.085 0.915 28 H 0.169 0.831 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.805 -9.113 -0.785 9.183 hybrid contribution 0.284 1.999 1.412 2.464 sum 1.089 -7.114 0.626 7.224 Atomic orbital electron populations 1.24215 0.95352 1.05910 1.03876 1.22871 0.94073 0.95612 0.97239 1.18869 0.84946 0.90929 0.95375 1.43707 1.53264 1.07877 1.08599 1.19818 1.31126 0.82958 1.09284 0.87136 1.25460 0.94955 1.00873 0.96039 1.69885 1.31052 1.34917 1.14354 0.85796 0.78710 0.81172 0.77944 1.19612 1.20713 1.19578 1.17505 0.87465 0.85685 0.83066 1.90658 1.49572 1.56987 1.48325 1.21442 0.95940 0.96859 0.95153 1.22466 0.99079 0.92209 0.99763 1.22667 0.96282 0.94410 0.95150 1.20394 0.97964 0.93550 0.98450 1.21699 0.98380 0.98467 1.01768 1.72655 1.05529 1.26928 1.03592 1.72862 1.16211 0.98336 1.21299 1.22885 0.93919 0.94215 0.93724 1.20642 0.99858 0.95741 0.99097 0.78535 0.92228 0.85541 0.91458 0.83123 0.89770 0.90041 0.92212 0.92653 0.91501 0.89726 0.90524 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.81 19.24 29.55 0.57 -5.24 16 2 C -0.10 -2.16 10.99 -37.12 -0.41 -2.57 16 3 C 0.22 4.78 5.10 -6.83 -0.03 4.75 16 4 N -0.42 -10.06 2.60 -118.97 -0.31 -10.37 16 5 C -0.30 -7.83 9.46 -15.02 -0.14 -7.97 16 6 H 0.11 2.96 7.22 -52.49 -0.38 2.58 16 7 C 0.03 0.75 5.36 -17.45 -0.09 0.66 16 8 N -0.86 -20.96 7.98 55.50 0.44 -20.52 16 9 Si 0.94 19.46 29.55 -169.99 -5.02 14.43 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 13 C 0.48 11.19 5.97 -12.27 -0.07 11.12 16 14 O -0.57 -15.03 16.04 5.31 0.09 -14.94 16 15 C -0.08 -1.60 5.01 -104.57 -0.52 -2.12 16 16 C -0.11 -1.80 7.40 -38.76 -0.29 -2.09 16 17 C 0.06 0.93 6.26 -82.46 -0.52 0.41 16 18 C -0.06 -0.73 6.35 -27.88 -0.18 -0.91 16 19 C -0.15 -1.56 9.77 37.16 0.36 -1.20 16 20 N -0.24 -4.38 11.03 33.57 0.37 -4.01 16 21 N -0.24 -4.72 11.42 33.82 0.39 -4.34 16 22 C 0.10 1.91 6.91 -81.97 -0.57 1.35 16 23 C -0.10 -1.69 9.63 36.00 0.35 -1.34 16 24 H 0.20 3.45 7.80 -54.08 -0.42 3.02 16 25 H 0.06 1.12 4.18 -51.93 -0.22 0.91 16 26 H 0.13 2.84 6.36 -51.93 -0.33 2.51 16 27 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 28 H 0.15 2.21 7.29 -52.49 -0.38 1.83 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.78 7.96 -51.93 -0.41 0.37 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.68 6.82 -51.93 -0.35 1.32 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -29.54 311.95 -5.05 -34.59 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.16 Total: 5.62 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.54 Total: -5.16 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.89 Total: -39.24 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.09 Total: -14.94 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.54 -5.05 -34.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490972309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.992 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds