Wall clock time and date at job start Mon Mar 30 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46940 * 132.23532 * 3 2 1 5 5 C 1.36793 * 120.00217 * 83.31173 * 4 3 2 6 6 H 1.08002 * 120.00471 * 166.11381 * 5 4 3 7 7 C 1.39107 * 119.99816 * 346.10894 * 5 4 3 8 8 N 1.31326 * 119.99721 * 359.69117 * 7 5 4 9 9 Si 1.86800 * 120.00286 * 179.68788 * 7 5 4 10 10 H 1.48495 * 109.46984 * 59.99835 * 9 7 5 11 11 H 1.48492 * 109.47027 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46840 * 300.00488 * 9 7 5 13 13 C 1.34780 * 119.99967 * 263.30426 * 4 3 2 14 14 O 1.21560 * 119.99859 * 184.41905 * 13 4 3 15 15 C 1.47982 * 120.00020 * 4.41728 * 13 4 3 16 16 C 1.40202 * 121.15354 * 301.24865 * 15 13 4 17 17 C 1.38458 * 117.81278 * 180.25322 * 16 15 13 18 18 C 1.50693 * 120.01028 * 179.72713 * 17 16 15 19 19 C 1.53005 * 109.47233 * 125.00133 * 18 17 16 20 20 N 1.31947 * 119.97302 * 359.43851 * 17 16 15 21 21 N 1.28271 * 122.54237 * 0.58784 * 20 17 16 22 22 C 1.31896 * 122.33455 * 359.69839 * 21 20 17 23 23 C 1.50694 * 120.17940 * 179.97438 * 22 21 20 24 24 H 4.40632 * 5.51471 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.47037 * 12.23558 * 3 2 1 26 26 H 1.09002 * 109.47126 * 252.23702 * 3 2 1 27 27 H 0.97003 * 119.99884 * 179.97438 * 8 7 5 28 28 H 1.08000 * 121.09536 * 359.97438 * 16 15 13 29 29 H 1.08996 * 109.47178 * 244.99821 * 18 17 16 30 30 H 1.09006 * 109.47366 * 4.99872 * 18 17 16 31 31 H 1.08996 * 109.47038 * 180.02562 * 19 18 17 32 32 H 1.09005 * 109.46859 * 299.99726 * 19 18 17 33 33 H 1.08994 * 109.46785 * 59.99789 * 19 18 17 34 34 H 1.09000 * 109.47834 * 274.50247 * 23 22 21 35 35 H 1.09002 * 109.46846 * 34.50664 * 23 22 21 36 36 H 1.09002 * 109.47012 * 154.49967 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 0.9293 -1.0226 5 6 3.2311 2.2649 -0.7433 6 1 3.7916 2.9144 -1.3993 7 6 2.6080 2.7864 0.3858 8 7 1.9214 1.9977 1.1802 9 14 2.7481 4.6087 0.7721 10 1 2.1776 5.3976 -0.3492 11 1 2.0010 4.9090 2.0198 12 1 4.1777 4.9678 0.9530 13 6 3.4869 0.4677 -2.2387 14 8 3.9670 1.2244 -3.0601 15 6 3.2903 -0.9602 -2.5739 16 6 3.8972 -1.9729 -1.8178 17 6 3.6705 -3.2854 -2.1960 18 6 4.3034 -4.4129 -1.4219 19 6 3.2172 -5.3845 -0.9561 20 7 2.8956 -3.5488 -3.2310 21 7 2.3373 -2.6273 -3.9271 22 6 2.4924 -1.3460 -3.6554 23 6 1.8139 -0.3036 -4.5062 24 1 -1.0502 0.0000 0.0003 25 1 3.0097 -1.0035 -0.2178 26 1 3.0091 0.3143 0.9787 27 1 1.4872 2.3613 1.9677 28 1 4.5245 -1.7369 -0.9709 29 1 5.0121 -4.9395 -2.0611 30 1 4.8264 -4.0096 -0.5547 31 1 3.6749 -6.1997 -0.3958 32 1 2.5085 -4.8579 -0.3169 33 1 2.6943 -5.7877 -1.8233 34 1 2.4371 -0.0792 -5.3719 35 1 0.8480 -0.6811 -4.8419 36 1 1.6658 0.6035 -3.9202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490972309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:38 Heat of formation + Delta-G solvation = 73.247334 kcal Electronic energy + Delta-G solvation = -21069.580802 eV Core-core repulsion = 17942.054411 eV Total energy + Delta-G solvation = -3127.526391 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.39912 -40.40189 -37.38935 -36.15608 -34.79404 -33.70828 -33.24024 -32.45107 -29.01416 -28.38784 -27.53973 -25.91090 -24.36138 -23.44728 -21.22320 -19.90503 -18.79443 -18.49845 -18.11558 -17.07237 -16.72733 -16.48179 -15.91961 -15.75121 -15.60576 -14.96843 -14.74119 -14.62581 -14.20379 -13.98991 -13.94830 -13.38356 -13.25869 -13.14295 -12.91944 -12.68776 -12.58411 -12.19429 -12.07980 -11.77522 -11.49315 -11.34197 -11.10916 -10.99917 -10.63977 -10.45790 -10.35004 -9.99320 -8.33408 -6.04000 -0.52698 -0.20467 1.33008 1.41275 1.50350 1.70354 1.98035 2.25989 2.38842 2.41908 2.82322 2.90297 3.01257 3.35920 3.41651 3.58241 3.84413 3.92030 4.04029 4.21212 4.41150 4.43955 4.48187 4.57363 4.61175 4.70486 4.90728 5.02279 5.06050 5.08268 5.19423 5.23072 5.35915 5.37822 5.46649 5.87347 6.30050 6.97456 7.10593 7.21964 7.60772 7.74286 8.54466 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.006233 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.128611 B = 4490.968400 C = 4928.140326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.133 4.133 3 C 0.226 3.774 4 N -0.426 5.426 5 C -0.342 4.342 6 H 0.087 0.913 7 C 0.005 3.995 8 N -0.869 5.869 9 Si 0.995 3.005 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.266 1.266 13 C 0.475 3.525 14 O -0.610 6.610 15 C -0.103 4.103 16 C -0.096 4.096 17 C 0.069 3.931 18 C -0.065 4.065 19 C -0.143 4.143 20 N -0.253 5.253 21 N -0.255 5.255 22 C 0.086 3.914 23 C -0.090 4.090 24 H 0.228 0.772 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.276 0.724 28 H 0.176 0.824 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 -9.912 1.537 10.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.135 4.135 3 C 0.104 3.896 4 N -0.142 5.142 5 C -0.469 4.469 6 H 0.105 0.895 7 C -0.198 4.198 8 N -0.506 5.506 9 Si 0.818 3.182 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.190 1.190 13 C 0.264 3.736 14 O -0.497 6.497 15 C -0.117 4.117 16 C -0.126 4.126 17 C -0.075 4.075 18 C -0.104 4.104 19 C -0.201 4.201 20 N -0.096 5.096 21 N -0.097 5.097 22 C -0.059 4.059 23 C -0.148 4.148 24 H 0.245 0.755 25 H 0.104 0.896 26 H 0.134 0.866 27 H 0.087 0.913 28 H 0.193 0.807 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.814 -10.645 0.401 10.683 hybrid contribution 0.275 2.342 1.052 2.582 sum 1.089 -8.303 1.453 8.499 Atomic orbital electron populations 1.25051 0.96365 1.04584 1.02534 1.23282 0.94894 0.96842 0.98485 1.18867 0.84908 0.91588 0.94209 1.43810 1.53235 1.07772 1.09358 1.19741 1.33042 0.83903 1.10226 0.89491 1.26090 0.94189 1.04245 0.95314 1.70000 1.30536 1.35913 1.14159 0.84962 0.78878 0.76748 0.77619 1.20420 1.19510 1.19043 1.17922 0.86272 0.86904 0.82496 1.90609 1.51121 1.58592 1.49426 1.21238 0.98129 0.95510 0.96860 1.22808 0.98145 0.92041 0.99588 1.23329 0.94802 0.95222 0.94171 1.20644 0.98283 0.92281 0.99143 1.21693 0.98050 0.98991 1.01359 1.72614 1.05942 1.26701 1.04293 1.72865 1.16826 0.98036 1.21983 1.23041 0.94291 0.94724 0.93879 1.20597 1.01142 0.94378 0.98721 0.75514 0.89637 0.86612 0.91261 0.80696 0.87905 0.87352 0.89363 0.93604 0.92828 0.88967 0.88348 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.93 19.24 74.32 1.43 -9.50 16 2 C -0.13 -5.92 10.99 31.12 0.34 -5.58 16 3 C 0.23 9.73 5.10 84.57 0.43 10.17 16 4 N -0.43 -20.93 2.60 -648.58 -1.68 -22.62 16 5 C -0.34 -18.10 9.46 84.13 0.80 -17.31 16 6 H 0.09 4.90 7.22 -2.91 -0.02 4.88 16 7 C 0.01 0.25 5.36 84.98 0.46 0.70 16 8 N -0.87 -41.87 7.98 21.69 0.17 -41.70 16 9 Si 0.99 39.89 29.55 68.60 2.03 41.92 16 10 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 12 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 13 C 0.48 22.97 5.97 86.83 0.52 23.49 16 14 O -0.61 -33.50 16.04 -3.91 -0.06 -33.56 16 15 C -0.10 -4.16 5.01 -19.83 -0.10 -4.26 16 16 C -0.10 -3.11 7.40 22.80 0.17 -2.94 16 17 C 0.07 2.01 6.26 42.59 0.27 2.28 16 18 C -0.06 -1.23 6.35 29.85 0.19 -1.04 16 19 C -0.14 -2.60 9.77 71.98 0.70 -1.90 16 20 N -0.25 -8.67 11.03 -47.71 -0.53 -9.19 16 21 N -0.26 -9.62 11.42 -46.91 -0.54 -10.15 16 22 C 0.09 3.36 6.91 42.93 0.30 3.65 16 23 C -0.09 -3.26 9.63 71.23 0.69 -2.58 16 24 H 0.23 7.42 7.80 -4.41 -0.03 7.38 16 25 H 0.09 3.13 4.18 -2.38 -0.01 3.12 16 26 H 0.12 5.19 6.36 -2.39 -0.02 5.18 16 27 H 0.28 12.70 8.31 -92.71 -0.77 11.93 16 28 H 0.18 4.69 7.29 -2.91 -0.02 4.67 16 29 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.11 1.53 7.92 -2.38 -0.02 1.51 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.05 1.12 7.96 -2.39 -0.02 1.10 16 34 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.06 2.38 6.82 -2.39 -0.02 2.36 16 Total: -1.00 -64.92 311.95 6.67 -58.25 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 1.10 Total: 21.87 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 6.18 Total: -4.81 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.57 Total: -83.66 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.06 Total: -33.56 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -64.92 6.67 -58.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490972309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.493 kcal (2) G-P(sol) polarization free energy of solvation -64.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds