Wall clock time and date at job start Mon Mar 30 2020 01:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47272 * 2 1 4 4 H 1.08997 * 109.47107 * 305.00227 * 3 2 1 5 5 C 1.50694 * 109.47220 * 185.00268 * 3 2 1 6 6 H 1.08004 * 120.00253 * 239.99986 * 5 3 2 7 7 C 1.37879 * 120.00280 * 59.99547 * 5 3 2 8 8 N 1.31514 * 119.99654 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00086 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47285 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46945 * 120.00290 * 9 7 5 12 12 H 1.48493 * 109.47274 * 240.00282 * 9 7 5 13 13 N 1.46501 * 109.46788 * 64.99912 * 3 2 1 14 14 C 1.34772 * 119.99938 * 274.99671 * 13 3 2 15 15 O 1.21597 * 120.00212 * 0.02562 * 14 13 3 16 16 C 1.47522 * 119.99685 * 180.02562 * 14 13 3 17 17 C 1.41034 * 119.39293 * 0.02562 * 16 14 13 18 18 C 1.35195 * 121.65652 * 180.02562 * 17 16 14 19 19 C 1.41378 * 119.92720 * 359.97438 * 18 17 16 20 20 N 1.31928 * 134.39573 * 180.02562 * 19 18 17 21 21 N 1.39913 * 109.06636 * 179.97438 * 20 19 18 22 22 H 0.96999 * 124.99157 * 179.97438 * 21 20 19 23 23 C 1.33827 * 110.02732 * 359.97253 * 21 20 19 24 24 C 1.38539 * 107.83478 * 0.02562 * 23 21 20 25 25 C 1.38221 * 119.39154 * 180.02562 * 16 14 13 26 26 H 1.08996 * 109.47369 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46808 * 300.00264 * 1 2 3 28 28 H 1.09003 * 109.46955 * 59.99649 * 1 2 3 29 29 H 1.09002 * 109.47022 * 240.00246 * 2 1 3 30 30 H 1.08997 * 109.47269 * 120.00025 * 2 1 3 31 31 H 0.97000 * 119.99575 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99450 * 95.00731 * 13 3 2 33 33 H 1.08004 * 119.17619 * 0.02562 * 17 16 14 34 34 H 1.07998 * 120.03765 * 179.70068 * 18 17 16 35 35 H 1.07995 * 126.08077 * 179.97438 * 23 21 20 36 36 H 1.08001 * 120.32729 * 359.97297 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5463 -0.1943 11 1 6.4970 -0.5175 -1.4630 12 1 6.3989 1.6167 -2.6103 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3416 2.6320 0.4319 16 6 0.0451 3.3244 2.6273 17 6 0.9563 3.3550 3.7034 18 6 0.6464 3.9468 4.8788 19 6 -0.6180 4.5554 5.0504 20 7 -1.2073 5.1957 6.0420 21 7 -2.4882 5.5864 5.6367 22 1 -3.1216 6.0727 6.1872 23 6 -2.7112 5.1907 4.3779 24 6 -1.5771 4.5306 3.9334 25 6 -1.2066 3.9013 2.7318 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0604 -2.9502 32 1 2.2720 2.1232 1.9977 33 1 1.9259 2.8941 3.5856 34 1 1.3624 3.9507 5.6873 35 1 -3.6147 5.3558 3.8099 36 1 -1.8929 3.8699 1.8985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545172871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:51 Heat of formation + Delta-G solvation = 51.728862 kcal Electronic energy + Delta-G solvation = -20254.830645 eV Core-core repulsion = 17126.371144 eV Total energy + Delta-G solvation = -3128.459502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38161 -39.16321 -36.66182 -34.96864 -32.41912 -32.19219 -31.21036 -30.39832 -28.92586 -26.95120 -24.51909 -23.04697 -22.51208 -20.75403 -20.27899 -19.35482 -18.27549 -17.62629 -16.66760 -15.85895 -15.38879 -15.07791 -14.60313 -14.38595 -14.14333 -13.86421 -13.63846 -13.06418 -12.72472 -12.59184 -12.19468 -11.67567 -11.51201 -11.36073 -11.21375 -10.92470 -10.80525 -10.43349 -10.37423 -10.26863 -10.12306 -9.57579 -9.03044 -8.97042 -8.88887 -8.46085 -7.83280 -7.59097 -6.08847 -4.17797 0.46760 1.54375 2.28973 2.48490 3.26414 3.34420 3.37049 3.41660 4.01351 4.26318 4.28642 4.44077 4.45280 4.96446 5.10664 5.22588 5.28763 5.38912 5.56798 5.63071 6.07573 6.36404 6.43407 6.45023 6.52551 6.56648 6.72391 6.75397 6.83855 7.11093 7.26143 7.41492 7.42658 7.51691 7.67273 7.79476 7.95617 8.22808 8.73612 8.82773 9.20079 9.49767 10.96555 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031971 B = 0.004105 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.570775 B = 6819.219810 C = 7397.841786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.703 5.703 14 C 0.546 3.454 15 O -0.551 6.551 16 C -0.162 4.162 17 C -0.046 4.046 18 C -0.117 4.117 19 C 0.118 3.882 20 N -0.314 5.314 21 N -0.427 5.427 22 H 0.443 0.557 23 C 0.095 3.905 24 C -0.215 4.215 25 C 0.022 3.978 26 H 0.021 0.979 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.387 0.613 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.191 0.809 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 7.895 13.499 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.351 5.351 14 C 0.332 3.668 15 O -0.432 6.432 16 C -0.167 4.167 17 C -0.069 4.069 18 C -0.139 4.139 19 C -0.037 4.037 20 N -0.143 5.143 21 N -0.127 5.127 22 H 0.287 0.713 23 C -0.063 4.063 24 C -0.225 4.225 25 C 0.000 4.000 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.221 0.779 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.208 0.792 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.586 8.176 13.870 19.269 hybrid contribution 0.812 -0.041 -0.263 0.855 sum -9.773 8.136 13.607 18.624 Atomic orbital electron populations 1.21843 0.98354 0.97982 1.01311 1.21934 0.92652 0.99791 1.02256 1.18801 0.94182 0.89199 0.81008 0.93194 1.21284 0.90764 1.38816 1.06274 0.92017 1.24882 0.98543 0.94843 0.95409 1.69908 1.34982 1.37754 1.09321 0.86415 0.84973 0.77731 0.78110 1.19723 1.20922 1.20931 1.46438 1.14484 1.55654 1.18505 1.18034 0.82889 0.79100 0.86742 1.90732 1.51629 1.60670 1.40162 1.19885 0.95644 1.05400 0.95759 1.20828 0.98813 0.95602 0.91649 1.19709 0.93503 1.02005 0.98642 1.21064 0.95518 0.96126 0.90947 1.77618 0.91652 1.23838 1.21157 1.46286 1.13782 1.41663 1.10942 0.71309 1.22825 0.99520 0.97057 0.86932 1.19606 0.95120 1.10323 0.97443 1.20667 0.94820 0.90195 0.94282 0.95941 0.94147 0.93159 0.88317 0.95027 0.92668 0.77926 0.84955 0.85107 0.79177 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.78 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.64 11.29 55.43 0.63 -24.02 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.70 -14.67 4.97 -55.98 -0.28 -14.95 16 14 C 0.55 11.03 6.32 -12.48 -0.08 10.95 16 15 O -0.55 -12.80 13.39 5.28 0.07 -12.73 16 16 C -0.16 -2.64 5.86 -105.06 -0.62 -3.26 16 17 C -0.05 -0.64 9.39 -39.61 -0.37 -1.01 16 18 C -0.12 -1.54 10.06 -39.47 -0.40 -1.94 16 19 C 0.12 1.62 7.49 -82.97 -0.62 0.99 16 20 N -0.31 -4.00 12.69 33.31 0.42 -3.58 16 21 N -0.43 -3.59 7.17 30.87 0.22 -3.37 16 22 H 0.44 1.84 8.96 -182.74 -1.64 0.20 16 23 C 0.09 0.80 12.09 -16.57 -0.20 0.60 16 24 C -0.22 -2.73 6.32 -105.23 -0.66 -3.39 16 25 C 0.02 0.32 9.64 -38.69 -0.37 -0.05 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.89 5.64 -51.93 -0.29 0.59 16 28 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.39 7.02 6.47 -40.82 -0.26 6.76 16 33 H 0.13 1.63 6.27 -52.48 -0.33 1.30 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.14 1.95 7.58 -52.49 -0.40 1.55 16 LS Contribution 302.49 15.07 4.56 4.56 Total: -1.00 -33.11 302.49 -8.37 -41.47 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.26 Total: 6.21 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.70 Total: -9.15 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.99 Total: -45.91 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.07 Total: -12.73 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.11 -8.37 -41.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545172871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.200 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds