Wall clock time and date at job start Mon Mar 30 2020 01:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47272 * 2 1 4 4 H 1.08997 * 109.47107 * 305.00227 * 3 2 1 5 5 C 1.50694 * 109.47220 * 185.00268 * 3 2 1 6 6 H 1.08004 * 120.00253 * 239.99986 * 5 3 2 7 7 C 1.37879 * 120.00280 * 59.99547 * 5 3 2 8 8 N 1.31514 * 119.99654 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00086 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47285 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46945 * 120.00290 * 9 7 5 12 12 H 1.48493 * 109.47274 * 240.00282 * 9 7 5 13 13 N 1.46501 * 109.46788 * 64.99912 * 3 2 1 14 14 C 1.34772 * 119.99938 * 274.99671 * 13 3 2 15 15 O 1.21597 * 120.00212 * 0.02562 * 14 13 3 16 16 C 1.47522 * 119.99685 * 180.02562 * 14 13 3 17 17 C 1.41034 * 119.39293 * 0.02562 * 16 14 13 18 18 C 1.35195 * 121.65652 * 180.02562 * 17 16 14 19 19 C 1.41378 * 119.92720 * 359.97438 * 18 17 16 20 20 N 1.31928 * 134.39573 * 180.02562 * 19 18 17 21 21 N 1.39913 * 109.06636 * 179.97438 * 20 19 18 22 22 H 0.96999 * 124.99157 * 179.97438 * 21 20 19 23 23 C 1.33827 * 110.02732 * 359.97253 * 21 20 19 24 24 C 1.38539 * 107.83478 * 0.02562 * 23 21 20 25 25 C 1.38221 * 119.39154 * 180.02562 * 16 14 13 26 26 H 1.08996 * 109.47369 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46808 * 300.00264 * 1 2 3 28 28 H 1.09003 * 109.46955 * 59.99649 * 1 2 3 29 29 H 1.09002 * 109.47022 * 240.00246 * 2 1 3 30 30 H 1.08997 * 109.47269 * 120.00025 * 2 1 3 31 31 H 0.97000 * 119.99575 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99450 * 95.00731 * 13 3 2 33 33 H 1.08004 * 119.17619 * 0.02562 * 17 16 14 34 34 H 1.07998 * 120.03765 * 179.70068 * 18 17 16 35 35 H 1.07995 * 126.08077 * 179.97438 * 23 21 20 36 36 H 1.08001 * 120.32729 * 359.97297 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5463 -0.1943 11 1 6.4970 -0.5175 -1.4630 12 1 6.3989 1.6167 -2.6103 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3416 2.6320 0.4319 16 6 0.0451 3.3244 2.6273 17 6 0.9563 3.3550 3.7034 18 6 0.6464 3.9468 4.8788 19 6 -0.6180 4.5554 5.0504 20 7 -1.2073 5.1957 6.0420 21 7 -2.4882 5.5864 5.6367 22 1 -3.1216 6.0727 6.1872 23 6 -2.7112 5.1907 4.3779 24 6 -1.5771 4.5306 3.9334 25 6 -1.2066 3.9013 2.7318 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0604 -2.9502 32 1 2.2720 2.1232 1.9977 33 1 1.9259 2.8941 3.5856 34 1 1.3624 3.9507 5.6873 35 1 -3.6147 5.3558 3.8099 36 1 -1.8929 3.8699 1.8985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545172871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:50 Heat of formation + Delta-G solvation = 28.678396 kcal Electronic energy + Delta-G solvation = -20255.830189 eV Core-core repulsion = 17126.371144 eV Total energy + Delta-G solvation = -3129.459045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27670 -40.70564 -37.83474 -36.78627 -34.28689 -33.21034 -32.84538 -31.57890 -30.02553 -28.81094 -25.77051 -24.69511 -23.79806 -21.92662 -21.63568 -21.06229 -19.31549 -19.00456 -17.76335 -17.51778 -17.13968 -16.27618 -16.20101 -15.82570 -15.30677 -15.13121 -14.87592 -14.53963 -14.19348 -13.87346 -13.79786 -13.45173 -13.13375 -12.84222 -12.71870 -12.62495 -12.49006 -12.11168 -12.01169 -11.54842 -11.38299 -11.34249 -10.99549 -10.68225 -10.48292 -9.86117 -9.56821 -8.64858 -8.12631 -6.29451 -0.45009 0.44607 1.39037 1.46425 1.47715 1.59504 1.81972 2.13434 2.39662 2.69785 3.00283 3.17094 3.27565 3.68685 4.02421 4.13782 4.27267 4.43180 4.48143 4.55036 4.57914 4.62425 4.81114 5.11221 5.12187 5.28909 5.36397 5.39111 5.48014 5.50821 5.61285 5.67810 5.73785 5.85643 5.99758 6.21427 6.23905 6.53540 6.78824 7.06635 7.37459 7.63964 8.93018 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031971 B = 0.004105 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.570775 B = 6819.219810 C = 7397.841786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.702 5.702 14 C 0.546 3.454 15 O -0.590 6.590 16 C -0.195 4.195 17 C -0.050 4.050 18 C -0.120 4.120 19 C 0.102 3.898 20 N -0.344 5.344 21 N -0.407 5.407 22 H 0.463 0.537 23 C 0.141 3.859 24 C -0.251 4.251 25 C 0.039 3.961 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.245 0.755 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 9.016 15.672 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.351 5.351 14 C 0.335 3.665 15 O -0.474 6.474 16 C -0.200 4.200 17 C -0.073 4.073 18 C -0.141 4.141 19 C -0.052 4.052 20 N -0.173 5.173 21 N -0.108 5.108 22 H 0.312 0.688 23 C -0.019 4.019 24 C -0.261 4.261 25 C 0.017 3.983 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.261 0.739 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.436 9.327 16.123 21.857 hybrid contribution 0.843 -0.249 -0.856 1.227 sum -10.593 9.078 15.267 20.681 Atomic orbital electron populations 1.21676 0.96963 0.99085 1.00334 1.21787 0.93827 0.99147 1.01251 1.18386 0.93640 0.89191 0.81313 0.98210 1.21624 0.91468 1.38780 1.06703 0.91095 1.25752 1.03227 0.94399 0.95024 1.70057 1.36923 1.38465 1.09848 0.85335 0.79250 0.77798 0.78178 1.18488 1.20453 1.21045 1.46191 1.15423 1.55924 1.17577 1.18615 0.81906 0.78221 0.87739 1.90697 1.52558 1.62158 1.41968 1.19554 0.97487 1.08301 0.94660 1.20801 0.98812 0.96243 0.91416 1.19889 0.94053 1.01500 0.98626 1.21296 0.96018 0.96305 0.91578 1.77576 0.93454 1.24752 1.21485 1.46376 1.12883 1.40314 1.11237 0.68774 1.23613 0.99354 0.92701 0.86271 1.19809 0.96974 1.12527 0.96797 1.20732 0.93896 0.88692 0.94937 0.93633 0.93812 0.95383 0.90925 0.94156 0.92640 0.76338 0.84126 0.83384 0.73879 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -6.09 5.45 30.60 0.17 -5.92 16 3 C 0.28 14.54 2.24 44.25 0.10 14.64 16 4 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 5 C -0.55 -29.34 8.73 25.60 0.22 -29.11 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.87 5.29 84.66 0.45 1.31 16 8 N -0.91 -52.62 11.29 21.45 0.24 -52.37 16 9 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.70 -30.22 4.97 -449.28 -2.23 -32.45 16 14 C 0.55 22.79 6.32 86.69 0.55 23.34 16 15 O -0.59 -28.62 13.39 -4.02 -0.05 -28.67 16 16 C -0.20 -6.41 5.86 -20.15 -0.12 -6.53 16 17 C -0.05 -1.38 9.39 22.25 0.21 -1.18 16 18 C -0.12 -3.02 10.06 22.34 0.22 -2.79 16 19 C 0.10 2.61 7.49 42.27 0.32 2.93 16 20 N -0.34 -7.87 12.69 -48.54 -0.62 -8.48 16 21 N -0.41 -5.16 7.17 -56.25 -0.40 -5.56 16 22 H 0.46 1.72 8.96 -213.44 -1.91 -0.19 16 23 C 0.14 1.73 12.09 84.46 1.02 2.76 16 24 C -0.25 -5.76 6.32 -20.26 -0.13 -5.89 16 25 C 0.04 1.11 9.64 22.84 0.22 1.33 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.04 1.96 5.64 -2.39 -0.01 1.95 16 28 H 0.03 1.37 7.84 -2.39 -0.02 1.35 16 29 H 0.07 4.05 5.95 -2.39 -0.01 4.04 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.40 14.79 6.47 -92.71 -0.60 14.19 16 33 H 0.14 3.45 6.27 -2.91 -0.02 3.44 16 34 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.25 0.29 8.06 -2.91 -0.02 0.27 16 36 H 0.14 3.81 7.58 -2.91 -0.02 3.79 16 Total: -1.00 -75.09 302.49 1.43 -73.66 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -1.38 Total: 19.63 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 3.84 Total: -10.19 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -3.01 Total: -98.87 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.05 Total: -28.67 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -75.09 1.43 -73.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545172871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.341 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds