Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48491 * 109.47060 * 150.00169 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2 15 15 O 1.21591 * 120.00544 * 359.97438 * 14 13 3 16 16 C 1.47518 * 119.99708 * 179.97438 * 14 13 3 17 17 C 1.41039 * 119.39270 * 0.02562 * 16 14 13 18 18 C 1.35186 * 121.65632 * 179.97438 * 17 16 14 19 19 C 1.41384 * 119.93224 * 0.02562 * 18 17 16 20 20 N 1.31922 * 134.39744 * 180.02562 * 19 18 17 21 21 N 1.39925 * 109.06178 * 179.97438 * 20 19 18 22 22 H 0.97002 * 124.98366 * 179.97438 * 21 20 19 23 23 C 1.33812 * 110.02792 * 0.02562 * 21 20 19 24 24 C 1.38542 * 107.83650 * 359.97438 * 23 21 20 25 25 C 1.38223 * 119.39145 * 179.72269 * 16 14 13 26 26 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 28 28 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 29 29 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 30 30 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 31 31 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 32 32 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 33 33 H 1.08003 * 119.17747 * 359.97438 * 17 16 14 34 34 H 1.08001 * 120.03688 * 179.97438 * 18 17 16 35 35 H 1.07997 * 126.08443 * 180.02562 * 23 21 20 36 36 H 1.07994 * 120.32933 * 0.03201 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1822 3.7355 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3861 15 8 -0.3373 2.6304 -0.4585 16 6 0.0702 3.3157 -2.6522 17 6 0.9911 3.3419 -3.7201 18 6 0.6925 3.9297 -4.9003 19 6 -0.5700 4.5387 -5.0856 20 7 -1.1499 5.1751 -6.0850 21 7 -2.4345 5.5676 -5.6929 22 1 -3.0625 6.0526 -6.2509 23 6 -2.6690 5.1769 -4.4348 24 6 -1.5392 4.5183 -3.9774 25 6 -1.1824 3.8876 -2.7723 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8787 0.5738 0.4634 32 1 2.2909 2.1165 -1.9977 33 1 1.9593 2.8807 -3.5919 34 1 1.4177 3.9349 -5.7005 35 1 -3.5777 5.3443 -3.8756 36 1 -1.8780 3.8554 -1.9468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545172872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = 51.457703 kcal Electronic energy + Delta-G solvation = -20327.781642 eV Core-core repulsion = 17199.310382 eV Total energy + Delta-G solvation = -3128.471260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.44594 -39.33275 -36.77599 -35.16291 -32.48194 -32.26846 -31.61060 -30.57413 -29.01795 -27.17583 -24.53538 -22.86789 -22.24517 -20.83800 -20.48404 -19.53406 -18.38127 -18.00074 -16.86393 -16.56769 -15.55429 -15.14823 -14.73450 -14.31134 -14.15959 -13.88351 -13.46606 -13.12851 -12.91473 -12.51508 -12.45549 -12.24292 -11.81484 -11.60151 -11.49381 -10.75712 -10.66895 -10.49274 -10.46280 -10.40309 -9.83136 -9.67118 -9.20465 -9.05617 -8.95737 -8.28122 -8.04976 -7.70100 -6.55480 -4.17658 0.40070 1.46657 2.22391 2.42966 3.31016 3.44364 3.48373 3.64063 3.91645 4.15646 4.21874 4.38509 4.47485 4.90104 5.03724 5.16795 5.20058 5.30126 5.49161 5.52550 6.00956 6.13220 6.14975 6.29059 6.31053 6.38522 6.47913 6.67386 6.76994 6.78665 6.85152 7.02081 7.11139 7.35467 7.42535 7.47752 7.72422 8.28092 8.54925 8.74922 9.04638 9.49343 10.83207 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034915 B = 0.004248 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.759283 B = 6589.550275 C = 6989.295953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.248 3.752 4 H 0.045 0.955 5 C -0.622 4.622 6 H 0.062 0.938 7 C 0.044 3.956 8 N -0.895 5.895 9 Si 1.034 2.966 10 H -0.284 1.284 11 H -0.267 1.267 12 H -0.285 1.285 13 N -0.697 5.697 14 C 0.547 3.453 15 O -0.553 6.553 16 C -0.164 4.164 17 C -0.047 4.047 18 C -0.116 4.116 19 C 0.118 3.882 20 N -0.313 5.313 21 N -0.427 5.427 22 H 0.443 0.557 23 C 0.097 3.903 24 C -0.216 4.216 25 C 0.024 3.976 26 H 0.029 0.971 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.270 0.730 32 H 0.391 0.609 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.192 0.808 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.366 7.643 -12.412 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.144 3.856 4 H 0.062 0.938 5 C -0.659 4.659 6 H 0.080 0.920 7 C -0.163 4.163 8 N -0.527 5.527 9 Si 0.861 3.139 10 H -0.210 1.210 11 H -0.192 1.192 12 H -0.210 1.210 13 N -0.345 5.345 14 C 0.334 3.666 15 O -0.434 6.434 16 C -0.169 4.169 17 C -0.070 4.070 18 C -0.137 4.137 19 C -0.036 4.036 20 N -0.141 5.141 21 N -0.126 5.126 22 H 0.287 0.713 23 C -0.062 4.062 24 C -0.226 4.226 25 C 0.003 3.997 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.225 0.775 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.209 0.791 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.598 7.670 -11.366 20.768 hybrid contribution -0.155 0.382 -1.572 1.625 sum -15.753 8.051 -12.938 21.917 Atomic orbital electron populations 1.21895 0.97377 0.98785 1.02094 1.22200 0.93782 0.99700 1.01063 1.19121 0.95734 0.88547 0.82161 0.93763 1.22060 0.89769 1.49345 1.04768 0.91986 1.25631 0.96848 0.91989 1.01812 1.70832 1.10543 1.40272 1.31042 0.84189 0.76479 0.77365 0.75915 1.21005 1.19245 1.21043 1.46213 1.14442 1.55686 1.18126 1.18085 0.82747 0.78924 0.86845 1.90721 1.51072 1.60728 1.40883 1.19809 0.95649 1.05799 0.95613 1.20813 0.98749 0.95743 0.91674 1.19715 0.93558 1.01849 0.98561 1.21063 0.95506 0.96109 0.90921 1.77635 0.91546 1.23779 1.21171 1.46300 1.13645 1.41661 1.10984 0.71251 1.22830 0.99496 0.97001 0.86859 1.19601 0.95114 1.10415 0.97496 1.20663 0.94829 0.90050 0.94177 0.95206 0.92927 0.93153 0.93177 0.92209 0.91968 0.77452 0.85004 0.85038 0.79132 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.53 37.16 0.32 -2.63 16 2 C -0.13 -2.88 5.03 -26.73 -0.13 -3.02 16 3 C 0.25 5.92 1.78 -69.08 -0.12 5.79 16 4 H 0.04 1.15 5.99 -51.93 -0.31 0.84 16 5 C -0.62 -16.72 8.97 -34.44 -0.31 -17.03 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 7 C 0.04 1.24 5.25 -17.82 -0.09 1.15 16 8 N -0.89 -26.51 13.70 55.43 0.76 -25.75 16 9 Si 1.03 24.99 26.33 -169.99 -4.48 20.51 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.15 5.88 56.52 0.33 -5.82 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.70 -14.19 4.97 -55.98 -0.28 -14.47 16 14 C 0.55 10.62 6.34 -12.48 -0.08 10.54 16 15 O -0.55 -12.13 13.39 5.29 0.07 -12.06 16 16 C -0.16 -2.59 5.86 -105.06 -0.62 -3.20 16 17 C -0.05 -0.64 9.39 -39.61 -0.37 -1.02 16 18 C -0.12 -1.49 10.05 -39.47 -0.40 -1.89 16 19 C 0.12 1.59 7.49 -82.98 -0.62 0.97 16 20 N -0.31 -3.90 12.69 33.30 0.42 -3.48 16 21 N -0.43 -3.44 7.17 30.87 0.22 -3.21 16 22 H 0.44 1.70 8.96 -182.73 -1.64 0.06 16 23 C 0.10 0.77 12.09 -16.58 -0.20 0.57 16 24 C -0.22 -2.65 6.32 -105.23 -0.66 -3.31 16 25 C 0.02 0.34 9.64 -38.69 -0.37 -0.03 16 26 H 0.03 0.53 8.14 -51.94 -0.42 0.11 16 27 H 0.05 1.12 7.88 -51.93 -0.41 0.71 16 28 H 0.05 1.02 5.63 -51.93 -0.29 0.73 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.38 5.64 -51.93 -0.29 1.09 16 31 H 0.27 7.91 8.73 -40.82 -0.36 7.56 16 32 H 0.39 7.11 6.45 -40.82 -0.26 6.85 16 33 H 0.13 1.63 6.27 -52.48 -0.33 1.30 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.14 1.84 7.58 -52.49 -0.40 1.44 16 LS Contribution 298.58 15.07 4.50 4.50 Total: -1.00 -33.99 298.58 -7.71 -41.70 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.26 Total: 5.36 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.67 Total: -13.11 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 1.12 Total: -46.91 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.06 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -4.48 Total: 20.51 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.99 -7.71 -41.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545172872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.160 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds