Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48491 * 109.47060 * 150.00169 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2 15 15 O 1.21591 * 120.00544 * 359.97438 * 14 13 3 16 16 C 1.47518 * 119.99708 * 179.97438 * 14 13 3 17 17 C 1.41039 * 119.39270 * 0.02562 * 16 14 13 18 18 C 1.35186 * 121.65632 * 179.97438 * 17 16 14 19 19 C 1.41384 * 119.93224 * 0.02562 * 18 17 16 20 20 N 1.31922 * 134.39744 * 180.02562 * 19 18 17 21 21 N 1.39925 * 109.06178 * 179.97438 * 20 19 18 22 22 H 0.97002 * 124.98366 * 179.97438 * 21 20 19 23 23 C 1.33812 * 110.02792 * 0.02562 * 21 20 19 24 24 C 1.38542 * 107.83650 * 359.97438 * 23 21 20 25 25 C 1.38223 * 119.39145 * 179.72269 * 16 14 13 26 26 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 28 28 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 29 29 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 30 30 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 31 31 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 32 32 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 33 33 H 1.08003 * 119.17747 * 359.97438 * 17 16 14 34 34 H 1.08001 * 120.03688 * 179.97438 * 18 17 16 35 35 H 1.07997 * 126.08443 * 180.02562 * 23 21 20 36 36 H 1.07994 * 120.32933 * 0.03201 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1822 3.7355 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3861 15 8 -0.3373 2.6304 -0.4585 16 6 0.0702 3.3157 -2.6522 17 6 0.9911 3.3419 -3.7201 18 6 0.6925 3.9297 -4.9003 19 6 -0.5700 4.5387 -5.0856 20 7 -1.1499 5.1751 -6.0850 21 7 -2.4345 5.5676 -5.6929 22 1 -3.0625 6.0526 -6.2509 23 6 -2.6690 5.1769 -4.4348 24 6 -1.5392 4.5183 -3.9774 25 6 -1.1824 3.8876 -2.7723 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8787 0.5738 0.4634 32 1 2.2909 2.1165 -1.9977 33 1 1.9593 2.8807 -3.5919 34 1 1.4177 3.9349 -5.7005 35 1 -3.5777 5.3443 -3.8756 36 1 -1.8780 3.8554 -1.9468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545172872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = 26.798226 kcal Electronic energy + Delta-G solvation = -20328.850957 eV Core-core repulsion = 17199.310382 eV Total energy + Delta-G solvation = -3129.540575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.30841 -40.80700 -37.91061 -36.89229 -34.45513 -33.35683 -33.07904 -31.63033 -30.07466 -28.97584 -25.63830 -24.24969 -23.84431 -22.04472 -21.66826 -21.16671 -19.91760 -19.12933 -18.27003 -17.63149 -17.22305 -16.35579 -15.92196 -15.69975 -15.27658 -15.22605 -14.89779 -14.46728 -14.42880 -14.21200 -13.93693 -13.84045 -13.50518 -12.73582 -12.63564 -12.53273 -12.43371 -12.26015 -11.67615 -11.50448 -11.40861 -11.36925 -11.12213 -10.75577 -10.43698 -9.90857 -9.71948 -8.78024 -8.67920 -6.39428 -0.47779 0.39871 1.36446 1.50364 1.51835 1.74206 1.79779 2.06931 2.46395 2.53614 2.94835 3.01594 3.23283 3.65625 3.94681 4.10555 4.22711 4.35353 4.40544 4.43424 4.44896 4.54528 4.60908 4.92267 5.07588 5.12984 5.24940 5.32014 5.33528 5.38247 5.44921 5.59651 5.67431 5.74090 5.78308 6.05532 6.21794 6.50796 6.57240 6.92672 7.31291 7.50456 8.60546 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034915 B = 0.004248 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.759283 B = 6589.550275 C = 6989.295953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.253 3.747 4 H 0.026 0.974 5 C -0.619 4.619 6 H 0.040 0.960 7 C 0.001 3.999 8 N -0.925 5.925 9 Si 1.069 2.931 10 H -0.276 1.276 11 H -0.251 1.251 12 H -0.280 1.280 13 N -0.702 5.702 14 C 0.550 3.450 15 O -0.583 6.583 16 C -0.199 4.199 17 C -0.052 4.052 18 C -0.121 4.121 19 C 0.102 3.898 20 N -0.345 5.345 21 N -0.407 5.407 22 H 0.464 0.536 23 C 0.144 3.856 24 C -0.252 4.252 25 C 0.045 3.955 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.260 0.740 32 H 0.399 0.601 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.248 0.752 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.603 8.668 -13.315 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.148 3.852 4 H 0.044 0.956 5 C -0.657 4.657 6 H 0.058 0.942 7 C -0.201 4.201 8 N -0.559 5.559 9 Si 0.891 3.109 10 H -0.202 1.202 11 H -0.175 1.175 12 H -0.205 1.205 13 N -0.351 5.351 14 C 0.340 3.660 15 O -0.466 6.466 16 C -0.204 4.204 17 C -0.074 4.074 18 C -0.142 4.142 19 C -0.052 4.052 20 N -0.174 5.174 21 N -0.108 5.108 22 H 0.313 0.687 23 C -0.016 4.016 24 C -0.262 4.262 25 C 0.024 3.976 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.235 0.765 33 H 0.153 0.847 34 H 0.163 0.837 35 H 0.263 0.737 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.846 8.724 -12.343 24.159 hybrid contribution 0.685 0.223 -1.467 1.634 sum -18.161 8.947 -13.811 24.507 Atomic orbital electron populations 1.21761 0.95492 1.00290 1.01459 1.22111 0.95402 0.98310 1.00775 1.18823 0.93417 0.89665 0.83305 0.95610 1.22242 0.91539 1.47995 1.03890 0.94217 1.26764 0.97001 0.91557 1.04762 1.70930 1.11632 1.42806 1.30507 0.83730 0.76239 0.77837 0.73122 1.20155 1.17519 1.20506 1.46054 1.15488 1.56245 1.17264 1.18550 0.81681 0.78004 0.87804 1.90684 1.51697 1.61916 1.42297 1.19513 0.97451 1.08819 0.94578 1.20766 0.98659 0.96339 0.91662 1.19859 0.94219 1.01659 0.98510 1.21266 0.95957 0.96278 0.91700 1.77592 0.93452 1.24793 1.21549 1.46393 1.12687 1.40336 1.11379 0.68745 1.23649 0.99387 0.92514 0.86082 1.19828 0.96840 1.12622 0.96898 1.20759 0.93837 0.88220 0.94822 0.92553 0.94019 0.93306 0.92937 0.93032 0.93108 0.76499 0.84732 0.83745 0.73650 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 8.53 71.98 0.61 -4.64 16 2 C -0.13 -5.65 5.03 30.59 0.15 -5.50 16 3 C 0.25 12.19 1.78 44.25 0.08 12.27 16 4 H 0.03 1.36 5.99 -2.38 -0.01 1.34 16 5 C -0.62 -34.11 8.97 25.60 0.23 -33.88 16 6 H 0.04 2.31 7.96 -2.91 -0.02 2.29 16 7 C 0.00 0.03 5.25 84.65 0.44 0.48 16 8 N -0.92 -56.12 13.70 21.45 0.29 -55.82 16 9 Si 1.07 50.67 26.33 68.60 1.81 52.47 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.25 -11.16 5.88 99.48 0.59 -10.58 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 N -0.70 -29.08 4.97 -449.28 -2.23 -31.32 16 14 C 0.55 21.47 6.34 86.69 0.55 22.02 16 15 O -0.58 -25.54 13.39 -4.00 -0.05 -25.59 16 16 C -0.20 -6.23 5.86 -20.15 -0.12 -6.35 16 17 C -0.05 -1.42 9.39 22.25 0.21 -1.22 16 18 C -0.12 -3.08 10.05 22.34 0.22 -2.86 16 19 C 0.10 2.57 7.49 42.27 0.32 2.88 16 20 N -0.35 -7.76 12.69 -48.54 -0.62 -8.38 16 21 N -0.41 -4.84 7.17 -56.26 -0.40 -5.25 16 22 H 0.46 1.39 8.96 -213.43 -1.91 -0.52 16 23 C 0.14 1.59 12.09 84.46 1.02 2.61 16 24 C -0.25 -5.46 6.32 -20.26 -0.13 -5.59 16 25 C 0.05 1.19 9.64 22.85 0.22 1.41 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.04 1.72 7.88 -2.39 -0.02 1.70 16 28 H 0.05 1.93 5.63 -2.38 -0.01 1.92 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 2.35 5.64 -2.39 -0.01 2.34 16 31 H 0.26 15.78 8.73 -92.71 -0.81 14.97 16 32 H 0.40 14.99 6.45 -92.71 -0.60 14.39 16 33 H 0.13 3.45 6.27 -2.91 -0.02 3.43 16 34 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.25 -0.10 8.06 -2.91 -0.02 -0.13 16 36 H 0.14 3.54 7.58 -2.91 -0.02 3.52 16 Total: -1.00 -75.60 298.58 1.08 -74.53 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -1.53 Total: 17.72 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 3.82 Total: -18.37 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -2.96 Total: -100.76 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.81 Total: 52.47 kcal Total: -75.60 1.08 -74.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545172872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.323 kcal (2) G-P(sol) polarization free energy of solvation -75.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds