Wall clock time and date at job start Mon Mar 30 2020 01:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47464 * 2 1 4 4 H 1.09000 * 109.46804 * 305.00222 * 3 2 1 5 5 C 1.50690 * 109.47701 * 185.00278 * 3 2 1 6 6 H 1.08007 * 120.00072 * 240.00145 * 5 3 2 7 7 C 1.37878 * 120.00332 * 59.99484 * 5 3 2 8 8 N 1.31522 * 119.99529 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00289 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47247 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47190 * 120.00321 * 9 7 5 12 12 H 1.48497 * 109.47499 * 239.99972 * 9 7 5 13 13 N 1.46500 * 109.47178 * 64.99662 * 3 2 1 14 14 C 1.34776 * 120.00375 * 275.00993 * 13 3 2 15 15 O 1.21777 * 119.99963 * 354.74030 * 14 13 3 16 16 C 1.41813 * 120.00417 * 174.74272 * 14 13 3 17 17 C 1.38529 * 126.78143 * 5.01734 * 16 14 13 18 18 N 1.32337 * 108.20983 * 179.82389 * 17 16 14 19 19 C 1.33196 * 109.81113 * 0.44619 * 18 17 16 20 20 C 1.40662 * 131.81280 * 179.71646 * 19 18 17 21 21 C 1.36280 * 119.38204 * 180.02562 * 20 19 18 22 22 C 1.40175 * 119.61112 * 0.02562 * 21 20 19 23 23 C 1.35261 * 120.12319 * 0.02562 * 22 21 20 24 24 N 1.35952 * 120.63845 * 359.96387 * 23 22 21 25 25 H 1.09008 * 109.47018 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47564 * 60.00325 * 1 2 3 27 27 H 1.09007 * 109.47259 * 299.99756 * 1 2 3 28 28 H 1.09001 * 109.47321 * 120.00130 * 2 1 3 29 29 H 1.09002 * 109.47609 * 239.99926 * 2 1 3 30 30 H 0.97002 * 119.99262 * 180.02562 * 8 7 5 31 31 H 0.96998 * 119.99909 * 95.00371 * 13 3 2 32 32 H 1.07994 * 125.89186 * 0.02562 * 17 16 14 33 33 H 1.07993 * 120.30665 * 359.97438 * 20 19 18 34 34 H 1.08007 * 120.19323 * 179.97438 * 21 20 19 35 35 H 1.07996 * 119.93511 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.67853 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8801 -1.3812 10 1 6.5988 1.5443 -0.1932 11 1 6.4961 -0.5189 -1.4627 12 1 6.3999 1.6157 -2.6092 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3059 2.7169 0.4020 16 6 0.0171 3.1997 2.6119 17 6 0.7749 3.3030 3.7669 18 7 0.0256 3.8597 4.7048 19 6 -1.1882 4.1159 4.2199 20 6 -2.3313 4.6877 4.8073 21 6 -3.4636 4.8337 4.0631 22 6 -3.4728 4.4123 2.7262 23 6 -2.3637 3.8637 2.1797 24 7 -1.2300 3.7147 2.9151 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0611 -2.9499 31 1 2.2719 2.1232 1.9977 32 1 1.8013 2.9869 3.8810 33 1 -2.3120 5.0074 5.8387 34 1 -4.3489 5.2707 4.5010 35 1 -4.3671 4.5258 2.1315 36 1 -2.3787 3.5419 1.1488 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547295184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:53 Heat of formation + Delta-G solvation = 27.330276 kcal Electronic energy + Delta-G solvation = -20673.858305 eV Core-core repulsion = 17544.340801 eV Total energy + Delta-G solvation = -3129.517504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.94569 -40.56418 -38.38842 -37.00264 -34.62663 -34.35287 -33.03374 -31.35312 -30.32447 -28.69620 -25.59479 -24.74480 -24.39797 -23.26202 -22.09989 -21.21126 -19.63543 -18.14815 -17.96156 -17.36841 -17.29748 -17.01100 -16.57521 -16.06664 -15.92920 -15.52480 -15.05461 -14.65585 -14.55098 -13.98246 -13.51173 -13.30568 -13.20440 -12.96190 -12.92516 -12.84161 -12.70767 -12.17204 -12.09246 -11.99579 -11.64134 -11.48159 -11.06328 -10.84580 -10.54202 -10.00943 -9.73218 -8.93170 -8.16340 -6.33129 -0.30454 -0.15307 1.30077 1.35014 1.44966 1.46863 1.58347 2.38199 2.40251 2.51158 2.73859 3.13054 3.13866 3.50134 3.79046 3.92902 4.00566 4.14909 4.35655 4.45642 4.51444 4.59084 4.70357 4.84812 5.03673 5.05837 5.15060 5.21469 5.35211 5.39389 5.50948 5.53423 5.60631 5.77436 5.90170 5.91912 6.14800 6.56516 6.73594 6.90944 7.31107 7.47874 8.89488 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.033296 B = 0.004495 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.735261 B = 6227.241590 C = 6731.648327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.282 3.718 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.285 1.285 13 N -0.693 5.693 14 C 0.585 3.415 15 O -0.599 6.599 16 C -0.172 4.172 17 C 0.110 3.890 18 N -0.522 5.522 19 C 0.223 3.777 20 C -0.102 4.102 21 C -0.065 4.065 22 C -0.122 4.122 23 C 0.036 3.964 24 N -0.331 5.331 25 H 0.048 0.952 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.265 0.735 31 H 0.403 0.597 32 H 0.213 0.787 33 H 0.181 0.819 34 H 0.197 0.803 35 H 0.193 0.807 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 7.406 13.481 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.342 5.342 14 C 0.375 3.625 15 O -0.483 6.483 16 C -0.286 4.286 17 C -0.051 4.051 18 N -0.242 5.242 19 C -0.016 4.016 20 C -0.122 4.122 21 C -0.088 4.088 22 C -0.142 4.142 23 C -0.088 4.088 24 N 0.001 4.999 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.239 0.761 32 H 0.229 0.771 33 H 0.198 0.802 34 H 0.214 0.786 35 H 0.210 0.790 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.887 7.461 13.350 19.998 hybrid contribution 1.203 -0.464 -1.292 1.825 sum -11.684 6.997 12.057 18.189 Atomic orbital electron populations 1.21636 0.97240 0.99280 0.99785 1.21792 0.93565 0.99074 1.01550 1.18414 0.93857 0.89039 0.80841 0.97985 1.21597 0.91235 1.38962 1.06819 0.90943 1.25741 1.03273 0.94318 0.94950 1.70051 1.36972 1.38366 1.09871 0.85321 0.79141 0.77840 0.78184 1.18481 1.20386 1.21071 1.45931 1.14461 1.55662 1.18109 1.15715 0.82714 0.78037 0.86046 1.90733 1.55112 1.61526 1.40940 1.19960 0.87942 1.21262 0.99440 1.23565 1.00362 0.94842 0.86307 1.70491 1.01193 1.21572 1.30913 1.21862 0.96635 1.01709 0.81395 1.20839 0.88334 1.00138 1.02881 1.21745 0.98895 0.95699 0.92511 1.21524 0.97463 0.97986 0.97244 1.22327 0.85082 1.02398 0.99027 1.42535 1.09107 1.36399 1.11901 0.93303 0.95251 0.94700 0.93945 0.90580 0.92572 0.76137 0.77088 0.80182 0.78626 0.79029 0.82531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.58 71.98 0.62 -4.94 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.83 16 3 C 0.28 14.59 2.25 44.24 0.10 14.69 16 4 H 0.00 0.14 7.51 -2.39 -0.02 0.12 16 5 C -0.55 -29.07 8.73 25.60 0.22 -28.85 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -52.07 11.29 21.45 0.24 -51.83 16 9 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.69 -29.90 5.00 -454.89 -2.27 -32.18 16 14 C 0.59 25.13 5.96 85.13 0.51 25.64 16 15 O -0.60 -29.27 12.93 -4.59 -0.06 -29.33 16 16 C -0.17 -6.26 6.83 39.08 0.27 -6.00 16 17 C 0.11 3.46 11.32 84.69 0.96 4.42 16 18 N -0.52 -16.30 11.25 -192.73 -2.17 -18.47 16 19 C 0.22 6.32 7.77 134.01 1.04 7.36 16 20 C -0.10 -1.81 10.10 22.41 0.23 -1.58 16 21 C -0.06 -0.75 10.07 22.28 0.22 -0.53 16 22 C -0.12 -1.89 10.00 22.05 0.22 -1.67 16 23 C 0.04 0.96 10.51 83.37 0.88 1.84 16 24 N -0.33 -10.58 2.95 -344.20 -1.02 -11.59 16 25 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 26 H 0.03 1.42 7.92 -2.39 -0.02 1.40 16 27 H 0.03 1.55 5.76 -2.38 -0.01 1.54 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 4.19 5.95 -2.39 -0.01 4.17 16 30 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.40 14.82 7.33 -92.71 -0.68 14.14 16 32 H 0.21 5.23 7.37 -2.91 -0.02 5.21 16 33 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.20 0.37 8.06 -2.91 -0.02 0.34 16 35 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.16 4.74 6.81 -2.91 -0.02 4.72 16 Total: -1.00 -73.05 302.30 3.06 -69.99 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.43 Total: 23.32 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.88 Total: 5.94 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -5.22 Total: -114.07 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.06 Total: -29.33 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -73.05 3.06 -69.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547295184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.321 kcal (2) G-P(sol) polarization free energy of solvation -73.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds