Wall clock time and date at job start Mon Mar 30 2020 01:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38400 * 120.39442 * 2 1 4 4 C 1.39933 * 118.35469 * 179.72099 * 3 2 1 5 5 C 1.43198 * 120.47090 * 180.28111 * 4 3 2 6 6 N 4.80162 * 136.42851 * 0.29904 * 2 1 3 7 7 C 1.39903 * 119.05841 * 0.59342 * 4 3 2 8 8 N 1.31336 * 120.69869 * 359.66146 * 7 4 3 9 9 C 1.32775 * 121.80804 * 0.02780 * 8 7 4 10 10 C 1.48215 * 119.56774 * 179.97438 * 9 8 7 11 11 O 1.21507 * 119.99711 * 104.25317 * 10 9 8 12 12 N 1.34772 * 119.99878 * 284.25674 * 10 9 8 13 13 C 1.46499 * 120.00221 * 5.33098 * 12 10 9 14 14 C 1.46501 * 119.99821 * 185.33291 * 12 10 9 15 15 H 1.09002 * 109.47613 * 359.97438 * 14 12 10 16 16 C 1.53009 * 109.46982 * 239.99728 * 14 12 10 17 17 C 1.50703 * 109.47320 * 120.00058 * 14 12 10 18 18 H 1.08001 * 119.99994 * 34.15971 * 17 14 12 19 19 C 1.37874 * 119.99836 * 214.16391 * 17 14 12 20 20 N 1.31524 * 119.99750 * 183.54875 * 19 17 14 21 21 Si 1.86798 * 120.00220 * 3.54730 * 19 17 14 22 22 H 1.48505 * 109.46984 * 93.31832 * 21 19 17 23 23 H 1.48504 * 109.47187 * 213.31511 * 21 19 17 24 24 H 1.48492 * 109.47248 * 333.32215 * 21 19 17 25 25 H 1.08993 * 109.47391 * 264.12567 * 1 2 3 26 26 H 1.09000 * 109.47022 * 144.12380 * 1 2 3 27 27 H 1.09001 * 109.47297 * 24.12855 * 1 2 3 28 28 H 1.07998 * 120.82409 * 359.97438 * 3 2 1 29 29 H 1.07996 * 119.65032 * 179.69078 * 7 4 3 30 30 H 1.09004 * 109.47273 * 84.69673 * 13 12 10 31 31 H 1.09004 * 109.47085 * 204.69361 * 13 12 10 32 32 H 1.08996 * 109.47055 * 324.69451 * 13 12 10 33 33 H 1.08991 * 109.47069 * 304.59163 * 16 14 12 34 34 H 1.09002 * 109.46880 * 64.59454 * 16 14 12 35 35 H 1.09002 * 109.46801 * 184.58910 * 16 14 12 36 36 H 0.96995 * 119.99754 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.1938 0.0000 4 6 3.6056 1.1440 0.0060 5 6 4.3752 2.3516 0.0123 6 7 4.9858 3.3095 0.0173 7 6 4.2412 -0.1023 -0.0009 8 7 3.5398 -1.2127 -0.0062 9 6 2.2121 -1.2017 -0.0058 10 6 1.4701 -2.4848 -0.0125 11 8 0.9420 -2.8864 1.0054 12 7 1.3813 -3.2059 -1.1476 13 6 2.1141 -2.7827 -2.3435 14 6 0.5519 -4.4129 -1.1856 15 1 0.0889 -4.5665 -0.2108 16 6 1.4251 -5.6210 -1.5309 17 6 -0.5206 -4.2528 -2.2321 18 1 -0.3147 -3.6987 -3.1360 19 6 -1.7647 -4.8136 -2.0355 20 7 -2.6783 -4.7339 -2.9783 21 14 -2.1527 -5.6866 -0.4303 22 1 -2.7869 -4.7303 0.5124 23 1 -3.0831 -6.8140 -0.6923 24 1 -0.8968 -6.2092 0.1651 25 1 -0.3634 -0.1052 1.0222 26 1 -0.3633 -0.8327 -0.6022 27 1 -0.3634 0.9379 -0.4201 28 1 1.6872 2.1404 -0.0004 29 1 5.3201 -0.1519 -0.0015 30 1 3.1340 -3.1646 -2.2988 31 1 1.6179 -3.1749 -3.2313 32 1 2.1354 -1.6940 -2.3902 33 1 1.9519 -5.4330 -2.4663 34 1 2.1490 -5.7860 -0.7329 35 1 0.7962 -6.5047 -1.6393 36 1 -3.5536 -5.1281 -2.8399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550679763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:57 Heat of formation + Delta-G solvation = 32.116606 kcal Electronic energy + Delta-G solvation = -20625.329822 eV Core-core repulsion = 17496.019869 eV Total energy + Delta-G solvation = -3129.309953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.92280 -38.85853 -36.85680 -35.58745 -33.93099 -32.98552 -32.32505 -30.33310 -27.63208 -26.41338 -25.53062 -25.21156 -22.99586 -21.64351 -19.11710 -18.70155 -17.55758 -17.23425 -16.61987 -16.11908 -14.92639 -14.67331 -14.45521 -14.05051 -13.94713 -13.56982 -13.51768 -13.20162 -13.15105 -12.72669 -12.68839 -12.57182 -12.41271 -12.35515 -11.92113 -11.79760 -11.42918 -11.14153 -10.80671 -10.53981 -10.07660 -10.03151 -9.81650 -9.41905 -9.29406 -9.06418 -8.68689 -7.83045 -6.24597 -4.27852 0.18722 0.91693 2.30649 2.58527 2.93158 3.23489 3.33996 3.37108 3.40566 3.49307 3.60827 4.26816 4.31406 4.41317 4.54706 4.70927 4.85561 5.14787 5.26146 5.39346 5.59015 5.64790 5.69779 5.90130 5.96301 6.03561 6.19662 6.26912 6.32753 6.39851 6.53546 6.86267 6.98954 7.10473 7.33758 7.52020 7.55188 7.95250 8.36526 8.63801 8.77250 9.37028 10.86789 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.030005 B = 0.004904 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.952477 B = 5708.425332 C = 5934.035938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.096 4.096 3 C -0.028 4.028 4 C -0.078 4.078 5 C 0.262 3.738 6 N -0.412 5.412 7 C 0.147 3.853 8 N -0.451 5.451 9 C 0.138 3.862 10 C 0.563 3.437 11 O -0.537 6.537 12 N -0.569 5.569 13 C 0.086 3.914 14 C 0.221 3.779 15 H 0.068 0.932 16 C -0.147 4.147 17 C -0.528 4.528 18 H 0.080 0.920 19 C 0.081 3.919 20 N -0.889 5.889 21 Si 0.870 3.130 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.259 1.259 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.150 0.850 29 H 0.170 0.830 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.028 0.972 35 H 0.059 0.941 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.387 8.843 3.454 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 C -0.056 4.056 4 C -0.083 4.083 5 C -0.054 4.054 6 N -0.087 5.087 7 C -0.016 4.016 8 N -0.160 5.160 9 C -0.002 4.002 10 C 0.347 3.653 11 O -0.415 6.415 12 N -0.299 5.299 13 C -0.058 4.058 14 C 0.121 3.879 15 H 0.086 0.914 16 C -0.205 4.205 17 C -0.566 4.566 18 H 0.098 0.902 19 C -0.123 4.123 20 N -0.525 5.525 21 Si 0.697 3.303 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.183 1.183 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.168 0.832 29 H 0.187 0.813 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.251 9.183 3.902 14.305 hybrid contribution -0.851 0.108 0.654 1.079 sum 9.400 9.291 4.555 13.980 Atomic orbital electron populations 1.20900 0.88425 1.04299 1.04167 1.20815 0.98600 0.91688 0.98753 1.21513 0.91552 0.98925 0.93636 1.17082 0.92624 0.89100 1.09517 1.25356 0.93540 0.92707 0.93768 1.81276 1.08444 1.10339 1.08673 1.22950 1.00564 0.85359 0.92709 1.67822 1.06588 1.30190 1.11383 1.21633 0.89987 0.94726 0.93892 1.17809 0.80307 0.82610 0.84571 1.90775 1.48446 1.69806 1.32423 1.48318 1.45647 1.26367 1.09585 1.21635 0.95892 0.98748 0.89526 1.19487 0.89096 0.79862 0.99429 0.91425 1.22211 0.99221 0.99463 0.99633 1.21097 0.95192 1.35915 1.04381 0.90221 1.24934 0.95737 0.95187 0.96424 1.69886 1.05179 1.44439 1.32995 0.86936 0.79077 0.80004 0.84310 1.19770 1.21151 1.18308 0.89674 0.89444 0.90594 0.83221 0.81273 0.93058 0.89506 0.93233 0.93230 0.95281 0.92250 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.53 36.00 0.34 -1.18 16 2 C -0.10 -1.22 5.92 -104.16 -0.62 -1.83 16 3 C -0.03 -0.27 9.55 -38.89 -0.37 -0.65 16 4 C -0.08 -0.74 5.75 -106.71 -0.61 -1.36 16 5 C 0.26 2.66 15.36 -22.47 -0.35 2.31 16 6 N -0.41 -5.01 18.54 41.84 0.78 -4.23 16 7 C 0.15 1.50 10.92 -17.14 -0.19 1.31 16 8 N -0.45 -6.24 10.20 -9.47 -0.10 -6.33 16 9 C 0.14 2.13 4.70 -82.95 -0.39 1.74 16 10 C 0.56 11.06 5.84 -12.16 -0.07 10.99 16 11 O -0.54 -12.33 16.45 5.36 0.09 -12.24 16 12 N -0.57 -11.31 2.75 -176.23 -0.49 -11.80 16 13 C 0.09 1.38 9.09 59.85 0.54 1.93 16 14 C 0.22 5.04 2.21 -69.08 -0.15 4.89 16 15 H 0.07 1.69 3.98 -51.93 -0.21 1.48 16 16 C -0.15 -2.97 9.24 37.16 0.34 -2.63 16 17 C -0.53 -13.56 8.70 -34.44 -0.30 -13.86 16 18 H 0.08 2.16 6.90 -52.49 -0.36 1.80 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 21 Si 0.87 20.89 27.16 -169.99 -4.62 16.28 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.26 -6.05 6.50 56.52 0.37 -5.68 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.09 1.37 7.29 -51.93 -0.38 1.00 16 27 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 28 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.47 6.63 -51.93 -0.34 1.13 16 32 H 0.05 0.71 6.99 -51.93 -0.36 0.35 16 33 H 0.05 0.92 7.52 -51.93 -0.39 0.53 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.79 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -31.02 316.37 -4.88 -35.90 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.17 Total: -1.53 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.91 Total: 3.77 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.97 Total: -46.94 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.62 Total: 16.28 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.02 -4.88 -35.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550679763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.013 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds