Wall clock time and date at job start Mon Mar 30 2020 01:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38396 * 120.39207 * 2 1 4 4 C 1.39941 * 118.35231 * 179.71564 * 3 2 1 5 5 C 1.43198 * 120.46922 * 180.28014 * 4 3 2 6 6 N 4.80164 * 136.42762 * 0.30121 * 2 1 3 7 7 C 1.39903 * 119.05671 * 0.57855 * 4 3 2 8 8 N 1.31337 * 120.70386 * 359.68012 * 7 4 3 9 9 C 1.32778 * 121.80269 * 0.02562 * 8 7 4 10 10 C 1.48217 * 119.56217 * 180.02562 * 9 8 7 11 11 O 1.21507 * 119.99903 * 174.16669 * 10 9 8 12 12 N 1.34772 * 119.99995 * 354.16383 * 10 9 8 13 13 C 1.46494 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47092 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47134 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46972 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00272 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00161 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99468 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00222 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47122 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46761 * 119.99922 * 20 18 16 23 23 H 1.48496 * 109.47090 * 239.99813 * 20 18 16 24 24 H 1.09005 * 109.46987 * 262.78293 * 1 2 3 25 25 H 1.09004 * 109.46569 * 142.78514 * 1 2 3 26 26 H 1.08996 * 109.47567 * 22.78871 * 1 2 3 27 27 H 1.07998 * 120.82559 * 359.97438 * 3 2 1 28 28 H 1.08007 * 119.64264 * 179.70540 * 7 4 3 29 29 H 0.97002 * 119.99744 * 0.02562 * 12 10 9 30 30 H 1.08992 * 109.47426 * 300.00531 * 13 12 10 31 31 H 1.09002 * 109.47024 * 60.00875 * 13 12 10 32 32 H 1.09001 * 109.47186 * 300.00334 * 14 13 12 33 33 H 1.09001 * 109.47150 * 59.99978 * 14 13 12 34 34 H 1.09001 * 109.47132 * 300.00091 * 15 14 13 35 35 H 1.08997 * 109.46780 * 60.00535 * 15 14 13 36 36 H 0.97006 * 119.99286 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2071 1.1938 0.0000 4 6 3.6057 1.1440 0.0061 5 6 4.3752 2.3516 0.0124 6 7 4.9858 3.3096 0.0174 7 6 4.2412 -0.1023 -0.0004 8 7 3.5399 -1.2127 -0.0058 9 6 2.2121 -1.2017 -0.0058 10 6 1.4702 -2.4848 -0.0114 11 8 0.2599 -2.4872 0.0955 12 7 2.1381 -3.6489 -0.1351 13 6 1.4048 -4.9171 -0.1401 14 6 2.3919 -6.0763 -0.2913 15 6 1.6260 -7.4009 -0.2971 16 6 2.5983 -8.5426 -0.4454 17 1 3.6566 -8.3435 -0.5277 18 6 2.1368 -9.8415 -0.4771 19 7 0.8480 -10.0839 -0.3774 20 14 3.3419 -11.2568 -0.6616 21 1 4.7239 -10.7213 -0.7538 22 1 3.2358 -12.1540 0.5169 23 1 3.0240 -12.0200 -1.8951 24 1 -0.3633 -0.1291 1.0196 25 1 -0.3632 -0.8185 -0.6216 26 1 -0.3634 0.9474 -0.3980 27 1 1.6871 2.1403 -0.0004 28 1 5.3201 -0.1518 -0.0006 29 1 3.1044 -3.6469 -0.2201 30 1 0.8591 -5.0249 0.7971 31 1 0.7019 -4.9271 -0.9731 32 1 2.9380 -5.9686 -1.2284 33 1 3.0946 -6.0662 0.5419 34 1 1.0796 -7.5087 0.6398 35 1 0.9237 -7.4107 -1.1306 36 1 0.5233 -10.9978 -0.3993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555870830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:49 Heat of formation + Delta-G solvation = 13.896244 kcal Electronic energy + Delta-G solvation = -19108.027151 eV Core-core repulsion = 15977.927104 eV Total energy + Delta-G solvation = -3130.100047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.23373 -39.18014 -37.07799 -35.69468 -34.16947 -33.27067 -32.77846 -31.17528 -28.11466 -26.87726 -25.56069 -23.32685 -23.06734 -20.96230 -20.48293 -19.01091 -18.13037 -17.44753 -16.37696 -15.83692 -15.52686 -15.01936 -14.89834 -14.44787 -14.25443 -14.13235 -13.87627 -13.59628 -13.43934 -13.35327 -12.95701 -12.74614 -12.46804 -12.28437 -11.84844 -11.74901 -10.93066 -10.76307 -10.57901 -10.40934 -10.30657 -9.89131 -9.83663 -9.51074 -9.39807 -9.11885 -8.82257 -8.38356 -6.03002 -4.05759 -0.24440 0.62995 2.08941 2.11448 2.86274 3.01373 3.23921 3.29734 3.37470 3.41160 3.46747 3.78753 4.12578 4.33127 4.37556 4.44215 4.63321 5.01817 5.18355 5.30842 5.33145 5.51786 5.62096 5.71048 5.73284 5.80320 6.11886 6.13799 6.43394 6.56972 6.77833 6.87535 6.97516 7.14711 7.62204 7.62556 7.74397 7.95890 8.17943 8.37337 9.01150 9.58621 11.08317 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.033324 B = 0.002821 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.044733 B = 9922.025242 C =10727.407776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.074 4.074 3 C -0.036 4.036 4 C -0.060 4.060 5 C 0.257 3.743 6 N -0.402 5.402 7 C 0.145 3.855 8 N -0.450 5.450 9 C 0.107 3.893 10 C 0.559 3.441 11 O -0.526 6.526 12 N -0.700 5.700 13 C 0.114 3.886 14 C -0.122 4.122 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.152 0.848 28 H 0.174 0.826 29 H 0.410 0.590 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 22.463 0.632 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.077 4.077 3 C -0.064 4.064 4 C -0.066 4.066 5 C -0.060 4.060 6 N -0.077 5.077 7 C -0.019 4.019 8 N -0.159 5.159 9 C -0.031 4.031 10 C 0.343 3.657 11 O -0.403 6.403 12 N -0.350 5.350 13 C -0.008 4.008 14 C -0.160 4.160 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.102 0.898 25 H 0.124 0.876 26 H 0.081 0.919 27 H 0.170 0.830 28 H 0.191 0.809 29 H 0.245 0.755 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.016 22.909 0.712 23.117 hybrid contribution 0.574 -0.367 -0.105 0.689 sum 3.590 22.542 0.608 22.834 Atomic orbital electron populations 1.21124 0.87956 1.03825 1.04664 1.20896 0.99024 0.91452 0.96306 1.21620 0.91572 0.99191 0.94034 1.17153 0.92659 0.89204 1.07535 1.25325 0.93725 0.92783 0.94161 1.81307 1.08152 1.10270 1.07973 1.22942 1.00761 0.85216 0.92959 1.67685 1.06925 1.30707 1.10621 1.21479 0.89660 0.94415 0.97569 1.17803 0.86704 0.83043 0.78178 1.90758 1.12922 1.86498 1.50108 1.46127 1.11884 1.05890 1.71080 1.21769 0.95671 0.81101 1.02280 1.21904 0.97869 0.95147 1.01045 1.19036 0.95482 0.89210 0.97671 1.21242 0.93507 0.91085 1.50117 0.92550 1.25033 0.95129 0.99039 0.95312 1.69977 1.12694 1.20137 1.50498 0.86528 0.81364 0.82383 0.77671 1.19735 1.21009 1.21019 0.89782 0.87647 0.91858 0.83034 0.80923 0.75462 0.91328 0.91329 0.92575 0.92538 0.96235 0.96238 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 8.71 36.00 0.31 -0.67 16 2 C -0.07 -0.64 5.92 -104.16 -0.62 -1.25 16 3 C -0.04 -0.23 9.55 -38.89 -0.37 -0.60 16 4 C -0.06 -0.40 5.75 -106.71 -0.61 -1.02 16 5 C 0.26 2.01 15.36 -22.47 -0.35 1.66 16 6 N -0.40 -4.10 18.54 41.84 0.78 -3.32 16 7 C 0.14 1.03 10.92 -17.14 -0.19 0.84 16 8 N -0.45 -4.36 9.53 -9.46 -0.09 -4.45 16 9 C 0.11 1.15 6.75 -82.95 -0.56 0.59 16 10 C 0.56 7.60 7.75 -12.16 -0.09 7.51 16 11 O -0.53 -8.22 13.28 5.36 0.07 -8.15 16 12 N -0.70 -9.70 5.54 -61.14 -0.34 -10.04 16 13 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 14 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 20 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.11 1.12 5.85 -51.93 -0.30 0.82 16 26 H 0.06 0.36 8.05 -51.93 -0.42 -0.06 16 27 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 28 H 0.17 0.78 8.06 -52.48 -0.42 0.35 16 29 H 0.41 5.06 7.81 -40.82 -0.32 4.74 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -31.58 323.10 -6.57 -38.15 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.39 Total: -1.36 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.19 Total: -6.21 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 1.08 Total: -43.53 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.07 Total: -8.15 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.58 -6.57 -38.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555870830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.049 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds