Wall clock time and date at job start Mon Mar 30 2020 01:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38396 * 120.39207 * 2 1 4 4 C 1.39941 * 118.35231 * 179.71564 * 3 2 1 5 5 C 1.43198 * 120.46922 * 180.28014 * 4 3 2 6 6 N 4.80164 * 136.42762 * 0.30121 * 2 1 3 7 7 C 1.39903 * 119.05671 * 0.57855 * 4 3 2 8 8 N 1.31337 * 120.70386 * 359.68012 * 7 4 3 9 9 C 1.32778 * 121.80269 * 0.02562 * 8 7 4 10 10 C 1.48217 * 119.56217 * 180.02562 * 9 8 7 11 11 O 1.21507 * 119.99903 * 174.16669 * 10 9 8 12 12 N 1.34772 * 119.99995 * 354.16383 * 10 9 8 13 13 C 1.46494 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47092 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47134 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46972 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00272 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00161 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99468 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00222 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47122 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46761 * 119.99922 * 20 18 16 23 23 H 1.48496 * 109.47090 * 239.99813 * 20 18 16 24 24 H 1.09005 * 109.46987 * 262.78293 * 1 2 3 25 25 H 1.09004 * 109.46569 * 142.78514 * 1 2 3 26 26 H 1.08996 * 109.47567 * 22.78871 * 1 2 3 27 27 H 1.07998 * 120.82559 * 359.97438 * 3 2 1 28 28 H 1.08007 * 119.64264 * 179.70540 * 7 4 3 29 29 H 0.97002 * 119.99744 * 0.02562 * 12 10 9 30 30 H 1.08992 * 109.47426 * 300.00531 * 13 12 10 31 31 H 1.09002 * 109.47024 * 60.00875 * 13 12 10 32 32 H 1.09001 * 109.47186 * 300.00334 * 14 13 12 33 33 H 1.09001 * 109.47150 * 59.99978 * 14 13 12 34 34 H 1.09001 * 109.47132 * 300.00091 * 15 14 13 35 35 H 1.08997 * 109.46780 * 60.00535 * 15 14 13 36 36 H 0.97006 * 119.99286 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2071 1.1938 0.0000 4 6 3.6057 1.1440 0.0061 5 6 4.3752 2.3516 0.0124 6 7 4.9858 3.3096 0.0174 7 6 4.2412 -0.1023 -0.0004 8 7 3.5399 -1.2127 -0.0058 9 6 2.2121 -1.2017 -0.0058 10 6 1.4702 -2.4848 -0.0114 11 8 0.2599 -2.4872 0.0955 12 7 2.1381 -3.6489 -0.1351 13 6 1.4048 -4.9171 -0.1401 14 6 2.3919 -6.0763 -0.2913 15 6 1.6260 -7.4009 -0.2971 16 6 2.5983 -8.5426 -0.4454 17 1 3.6566 -8.3435 -0.5277 18 6 2.1368 -9.8415 -0.4771 19 7 0.8480 -10.0839 -0.3774 20 14 3.3419 -11.2568 -0.6616 21 1 4.7239 -10.7213 -0.7538 22 1 3.2358 -12.1540 0.5169 23 1 3.0240 -12.0200 -1.8951 24 1 -0.3633 -0.1291 1.0196 25 1 -0.3632 -0.8185 -0.6216 26 1 -0.3634 0.9474 -0.3980 27 1 1.6871 2.1403 -0.0004 28 1 5.3201 -0.1518 -0.0006 29 1 3.1044 -3.6469 -0.2201 30 1 0.8591 -5.0249 0.7971 31 1 0.7019 -4.9271 -0.9731 32 1 2.9380 -5.9686 -1.2284 33 1 3.0946 -6.0662 0.5419 34 1 1.0796 -7.5087 0.6398 35 1 0.9237 -7.4107 -1.1306 36 1 0.5233 -10.9978 -0.3993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555870830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:49 Heat of formation + Delta-G solvation = -6.436495 kcal Electronic energy + Delta-G solvation = -19108.908845 eV Core-core repulsion = 15977.927104 eV Total energy + Delta-G solvation = -3130.981741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.98591 -40.17825 -37.79090 -37.06006 -35.37759 -34.60295 -33.59692 -32.80132 -29.18942 -28.12659 -26.57090 -24.78108 -23.89307 -22.26653 -21.90345 -19.65919 -19.12756 -18.51438 -18.05960 -16.91215 -16.71943 -16.36905 -15.95162 -15.92475 -15.17982 -14.89639 -14.68936 -14.39326 -14.31981 -14.19885 -14.08499 -13.73464 -13.62572 -13.48222 -13.37677 -13.12843 -12.75618 -12.52081 -12.32660 -11.65295 -11.53631 -11.20360 -11.13279 -10.91858 -10.56854 -10.53656 -10.29644 -9.93251 -8.17734 -6.28410 -0.93003 0.05785 1.32427 1.43143 1.43562 1.46294 1.56577 2.02495 2.06867 2.43875 2.54981 2.75398 3.06091 3.16285 3.59648 3.65306 3.72632 3.93711 4.17958 4.25122 4.43846 4.56305 4.59229 4.79430 4.86949 4.97767 4.99552 5.07034 5.19200 5.20010 5.38106 5.54440 5.59560 5.74374 5.87195 6.23357 6.25759 6.38214 6.66608 6.89241 7.12546 7.40969 8.94446 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.033324 B = 0.002821 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.044733 B = 9922.025242 C =10727.407776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.017 4.017 4 C -0.049 4.049 5 C 0.285 3.715 6 N -0.440 5.440 7 C 0.150 3.850 8 N -0.465 5.465 9 C 0.088 3.912 10 C 0.556 3.444 11 O -0.552 6.552 12 N -0.698 5.698 13 C 0.129 3.871 14 C -0.103 4.103 15 C 0.024 3.976 16 C -0.539 4.539 17 H 0.065 0.935 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.259 1.259 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.185 0.815 28 H 0.201 0.799 29 H 0.418 0.582 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.066 0.934 34 H -0.006 1.006 35 H -0.005 1.005 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.447 24.054 0.514 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.045 4.045 4 C -0.055 4.055 5 C -0.031 4.031 6 N -0.115 5.115 7 C -0.013 4.013 8 N -0.175 5.175 9 C -0.049 4.049 10 C 0.342 3.658 11 O -0.431 6.431 12 N -0.348 5.348 13 C 0.005 3.995 14 C -0.141 4.141 15 C -0.014 4.014 16 C -0.577 4.577 17 H 0.083 0.917 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.790 3.210 21 H -0.183 1.183 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.202 0.798 28 H 0.217 0.783 29 H 0.256 0.744 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.013 0.987 35 H 0.013 0.987 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.814 24.519 0.593 24.994 hybrid contribution 0.006 -0.778 -0.064 0.781 sum 4.820 23.741 0.529 24.231 Atomic orbital electron populations 1.21056 0.87915 1.04368 1.03970 1.20936 0.99126 0.91439 0.96366 1.21893 0.91340 0.99539 0.91736 1.17112 0.92730 0.88618 1.07014 1.25209 0.92778 0.92216 0.92933 1.81358 1.09359 1.11492 1.09322 1.23367 1.01838 0.84587 0.91529 1.67637 1.06450 1.31960 1.11482 1.21084 0.90296 0.93393 1.00175 1.18266 0.86608 0.83832 0.77089 1.90752 1.14208 1.87091 1.51046 1.45927 1.12157 1.05127 1.71636 1.21337 0.94937 0.81862 1.01318 1.21605 0.97625 0.92946 1.01951 1.18944 0.95121 0.92051 0.95259 1.21714 0.94310 0.92100 1.49584 0.91708 1.26000 0.96952 1.02178 0.94963 1.70114 1.14812 1.20889 1.51652 0.85390 0.79348 0.78623 0.77624 1.18320 1.20603 1.20603 0.90288 0.90359 0.88828 0.79811 0.78278 0.74444 0.92443 0.92342 0.91557 0.91576 0.98733 0.98695 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.71 71.24 0.62 -1.16 16 2 C -0.08 -1.15 5.92 -19.56 -0.12 -1.27 16 3 C -0.02 -0.16 9.55 22.72 0.22 0.06 16 4 C -0.05 -0.50 5.75 -21.22 -0.12 -0.62 16 5 C 0.28 3.61 15.36 88.33 1.36 4.96 16 6 N -0.44 -7.99 18.54 19.00 0.35 -7.64 16 7 C 0.15 1.71 10.92 85.17 0.93 2.64 16 8 N -0.47 -8.16 9.53 -183.86 -1.75 -9.91 16 9 C 0.09 1.79 6.75 41.92 0.28 2.07 16 10 C 0.56 15.19 7.75 86.90 0.67 15.87 16 11 O -0.55 -17.77 13.28 -3.74 -0.05 -17.82 16 12 N -0.70 -19.31 5.54 -465.64 -2.58 -21.89 16 13 C 0.13 4.36 5.67 86.38 0.49 4.85 16 14 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 15 C 0.02 1.22 4.97 29.85 0.15 1.37 16 16 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 18 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 19 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 20 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.08 1.68 5.85 -2.39 -0.01 1.66 16 26 H 0.09 0.82 8.05 -2.39 -0.02 0.80 16 27 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 28 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 29 H 0.42 10.02 7.81 -92.71 -0.72 9.29 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -69.62 323.10 4.01 -65.62 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.39 Total: 6.58 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.34 Total: -4.32 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -3.70 Total: -95.66 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.05 Total: -17.82 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -69.62 4.01 -65.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555870830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.179 kcal (2) G-P(sol) polarization free energy of solvation -69.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds