Wall clock time and date at job start Mon Mar 30 2020 01:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38329 * 119.38837 * 2 1 4 4 C 1.38382 * 119.50440 * 180.02562 * 3 2 1 5 5 C 1.39966 * 118.36368 * 359.72203 * 4 3 2 6 6 C 1.43194 * 120.61387 * 180.28620 * 5 4 3 7 7 N 4.80328 * 135.13836 * 359.73818 * 3 1 2 8 8 C 1.40548 * 118.77789 * 0.53819 * 5 4 3 9 9 N 1.38401 * 119.82839 * 179.73606 * 8 5 4 10 10 C 1.48566 * 110.99553 * 299.84775 * 9 8 5 11 11 C 1.54378 * 104.59376 * 200.95798 * 10 9 8 12 12 C 1.54258 * 105.05931 * 23.85692 * 11 10 9 13 13 O 1.42903 * 110.32520 * 118.99930 * 12 11 10 14 14 C 1.50702 * 110.31938 * 241.10222 * 12 11 10 15 15 H 1.08002 * 120.00299 * 118.55053 * 14 12 11 16 16 C 1.37884 * 119.99942 * 298.26612 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.48558 * 111.00345 * 184.43472 * 9 8 5 23 23 N 1.31887 * 119.38905 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47173 * 269.98057 * 1 2 3 25 25 H 1.09000 * 109.47141 * 29.98146 * 1 2 3 26 26 H 1.08999 * 109.47348 * 149.98194 * 1 2 3 27 27 H 1.07999 * 120.25214 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.81776 * 179.97438 * 4 3 2 29 29 H 1.09003 * 110.41029 * 82.17954 * 10 9 8 30 30 H 1.09000 * 110.40833 * 319.74076 * 10 9 8 31 31 H 1.08995 * 110.32376 * 264.95634 * 11 10 9 32 32 H 1.09010 * 110.32362 * 142.74775 * 11 10 9 33 33 H 0.96699 * 113.99905 * 62.82283 * 13 12 11 34 34 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 35 35 H 1.08997 * 110.41640 * 40.25128 * 22 9 8 36 36 H 1.09005 * 110.40400 * 277.81582 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.2053 0.0000 4 6 3.5696 1.2081 -0.0005 5 6 4.2370 -0.0222 0.0049 6 6 5.6680 -0.0755 0.0108 7 7 6.8032 -0.1177 0.0155 8 6 3.4769 -1.2044 -0.0009 9 7 4.1145 -2.4328 -0.0012 10 6 4.9772 -2.5844 -1.2012 11 6 5.1703 -4.1087 -1.3513 12 6 3.9570 -4.7387 -0.6368 13 8 3.1849 -5.5117 -1.5579 14 6 4.4152 -5.5995 0.5122 15 1 4.1132 -5.3593 1.5209 16 6 5.2153 -6.6971 0.2750 17 7 5.5831 -6.9895 -0.9534 18 14 5.7770 -7.7684 1.6983 19 1 4.5909 -8.3323 2.3916 20 1 6.6214 -8.8753 1.1815 21 1 6.5657 -6.9493 2.6535 22 6 3.1330 -3.5421 -0.1150 23 7 2.1542 -1.1491 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6399 2.1372 -0.0004 28 1 4.1210 2.1367 -0.0010 29 1 5.9375 -2.0933 -1.0435 30 1 4.4801 -2.1756 -2.0809 31 1 6.0972 -4.4220 -0.8711 32 1 5.1758 -4.3876 -2.4051 33 1 3.6606 -6.2642 -1.9354 34 1 6.1463 -7.7615 -1.1202 35 1 2.3472 -3.2833 -0.8246 36 1 2.7046 -3.7720 0.8606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:21 Heat of formation + Delta-G solvation = 32.248811 kcal Electronic energy + Delta-G solvation = -20924.879009 eV Core-core repulsion = 17795.574789 eV Total energy + Delta-G solvation = -3129.304220 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80143 -38.26590 -36.49525 -35.13371 -33.02834 -32.16145 -32.01930 -29.14018 -28.45654 -27.54950 -24.91428 -22.98266 -22.77928 -20.74897 -19.63169 -18.82491 -17.12883 -16.87580 -16.37050 -15.16794 -14.84199 -14.76724 -14.32045 -14.04211 -13.72094 -13.49384 -13.20133 -13.05174 -12.87374 -12.57023 -12.42150 -12.25422 -11.96276 -11.85198 -11.60773 -11.24728 -11.16803 -10.75921 -10.55930 -10.45868 -10.10430 -9.90180 -9.54295 -9.30641 -9.09055 -8.58656 -8.19930 -7.93212 -6.19563 -4.25829 0.65147 1.21570 2.84031 3.06521 3.28026 3.31971 3.36030 3.71181 3.88906 4.05612 4.33296 4.40208 4.60452 5.00651 5.07176 5.13044 5.29152 5.43255 5.50110 5.55036 5.62197 5.77040 5.87623 5.93254 5.96638 6.04650 6.24853 6.34872 6.58772 6.75160 6.79133 7.00098 7.30789 7.47257 7.53518 7.66461 7.81270 8.03065 8.14996 8.76539 9.38456 9.47856 10.87854 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022102 B = 0.005669 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.563511 B = 4938.183328 C = 5519.601873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.185 3.815 3 C -0.218 4.218 4 C -0.002 4.002 5 C -0.119 4.119 6 C 0.271 3.729 7 N -0.420 5.420 8 C 0.372 3.628 9 N -0.447 5.447 10 C 0.039 3.961 11 C -0.121 4.121 12 C 0.247 3.753 13 O -0.590 6.590 14 C -0.524 4.524 15 H 0.063 0.937 16 C 0.067 3.933 17 N -0.900 5.900 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.068 3.932 23 N -0.514 5.514 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.384 0.616 34 H 0.267 0.733 35 H 0.064 0.936 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 14.872 -0.587 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.044 3.956 3 C -0.239 4.239 4 C -0.030 4.030 5 C -0.128 4.128 6 C -0.044 4.044 7 N -0.096 5.096 8 C 0.135 3.865 9 N -0.162 5.162 10 C -0.086 4.086 11 C -0.160 4.160 12 C 0.207 3.793 13 O -0.399 6.399 14 C -0.562 4.562 15 H 0.081 0.919 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.057 4.057 23 N -0.228 5.228 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.235 0.765 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.479 14.202 -0.056 15.610 hybrid contribution 0.603 -0.157 0.179 0.648 sum -5.876 14.045 0.123 15.225 Atomic orbital electron populations 1.20815 0.88502 1.03819 1.03477 1.21407 0.97098 0.87819 0.89247 1.21642 0.93990 0.99311 1.08956 1.21418 0.94326 0.96107 0.91131 1.16435 0.85717 0.94311 1.16373 1.25112 0.92127 0.93519 0.93685 1.81224 1.11772 1.07310 1.09251 1.20237 0.87696 0.90506 0.88028 1.61933 1.18057 0.99850 1.36357 1.23394 0.96025 1.01251 0.87906 1.22953 1.03168 0.89272 1.00619 1.19283 0.85236 0.87543 0.87239 1.86086 1.45179 1.45843 1.62813 1.21604 1.30502 1.10446 0.93627 0.91910 1.25005 0.95046 0.97287 0.96082 1.69671 1.36912 1.28220 1.19173 0.86515 0.78687 0.79724 0.82284 1.20060 1.21216 1.20149 1.22947 0.92510 0.88261 1.02032 1.67749 1.07756 1.29234 1.18111 0.89857 0.90436 0.89960 0.84172 0.84028 0.90588 0.93501 0.90072 0.92021 0.76525 0.92277 0.91814 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.16 36.00 0.37 -0.55 16 2 C 0.19 2.21 6.78 -82.54 -0.56 1.65 16 3 C -0.22 -2.09 9.70 -39.49 -0.38 -2.47 16 4 C 0.00 -0.02 9.90 -38.88 -0.39 -0.40 16 5 C -0.12 -1.77 5.63 -106.46 -0.60 -2.37 16 6 C 0.27 4.47 12.64 -22.47 -0.28 4.18 16 7 N -0.42 -7.62 18.02 41.84 0.75 -6.87 16 8 C 0.37 6.45 6.23 -155.08 -0.97 5.48 16 9 N -0.45 -9.10 5.13 -168.52 -0.87 -9.97 16 10 C 0.04 0.79 5.50 -2.18 -0.01 0.77 16 11 C -0.12 -2.83 5.56 -25.35 -0.14 -2.97 16 12 C 0.25 6.13 1.06 -90.39 -0.10 6.04 16 13 O -0.59 -15.15 12.95 -35.23 -0.46 -15.60 16 14 C -0.52 -14.14 8.09 -34.44 -0.28 -14.41 16 15 H 0.06 1.71 7.53 -52.49 -0.40 1.32 16 16 C 0.07 1.80 5.02 -17.82 -0.09 1.71 16 17 N -0.90 -24.02 10.80 55.43 0.60 -23.42 16 18 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.07 1.51 5.13 -2.19 -0.01 1.50 16 23 N -0.51 -8.24 8.37 -8.41 -0.07 -8.31 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.44 8.07 -51.93 -0.42 0.03 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.08 1.51 5.88 -51.93 -0.31 1.21 16 30 H 0.05 0.88 7.97 -51.93 -0.41 0.46 16 31 H 0.08 2.08 7.25 -51.93 -0.38 1.70 16 32 H 0.06 1.42 7.98 -51.92 -0.41 1.01 16 33 H 0.38 9.95 7.28 45.56 0.33 10.28 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.06 1.39 7.19 -51.93 -0.37 1.01 16 36 H 0.09 1.94 7.67 -51.93 -0.40 1.54 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -29.50 305.09 -7.49 -37.00 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.59 Total: 8.37 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -3.44 Total: -1.86 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.42 Total: -48.56 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.46 Total: -15.60 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.50 -7.49 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.244 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds