Wall clock time and date at job start Mon Mar 30 2020 01:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38329 * 119.38837 * 2 1 4 4 C 1.38382 * 119.50440 * 180.02562 * 3 2 1 5 5 C 1.39966 * 118.36368 * 359.72203 * 4 3 2 6 6 C 1.43194 * 120.61387 * 180.28620 * 5 4 3 7 7 N 4.80328 * 135.13836 * 359.73818 * 3 1 2 8 8 C 1.40548 * 118.77789 * 0.53819 * 5 4 3 9 9 N 1.38401 * 119.82839 * 179.73606 * 8 5 4 10 10 C 1.48566 * 110.99553 * 299.84775 * 9 8 5 11 11 C 1.54378 * 104.59376 * 200.95798 * 10 9 8 12 12 C 1.54258 * 105.05931 * 23.85692 * 11 10 9 13 13 O 1.42903 * 110.32520 * 118.99930 * 12 11 10 14 14 C 1.50702 * 110.31938 * 241.10222 * 12 11 10 15 15 H 1.08002 * 120.00299 * 118.55053 * 14 12 11 16 16 C 1.37884 * 119.99942 * 298.26612 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.48558 * 111.00345 * 184.43472 * 9 8 5 23 23 N 1.31887 * 119.38905 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47173 * 269.98057 * 1 2 3 25 25 H 1.09000 * 109.47141 * 29.98146 * 1 2 3 26 26 H 1.08999 * 109.47348 * 149.98194 * 1 2 3 27 27 H 1.07999 * 120.25214 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.81776 * 179.97438 * 4 3 2 29 29 H 1.09003 * 110.41029 * 82.17954 * 10 9 8 30 30 H 1.09000 * 110.40833 * 319.74076 * 10 9 8 31 31 H 1.08995 * 110.32376 * 264.95634 * 11 10 9 32 32 H 1.09010 * 110.32362 * 142.74775 * 11 10 9 33 33 H 0.96699 * 113.99905 * 62.82283 * 13 12 11 34 34 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 35 35 H 1.08997 * 110.41640 * 40.25128 * 22 9 8 36 36 H 1.09005 * 110.40400 * 277.81582 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.2053 0.0000 4 6 3.5696 1.2081 -0.0005 5 6 4.2370 -0.0222 0.0049 6 6 5.6680 -0.0755 0.0108 7 7 6.8032 -0.1177 0.0155 8 6 3.4769 -1.2044 -0.0009 9 7 4.1145 -2.4328 -0.0012 10 6 4.9772 -2.5844 -1.2012 11 6 5.1703 -4.1087 -1.3513 12 6 3.9570 -4.7387 -0.6368 13 8 3.1849 -5.5117 -1.5579 14 6 4.4152 -5.5995 0.5122 15 1 4.1132 -5.3593 1.5209 16 6 5.2153 -6.6971 0.2750 17 7 5.5831 -6.9895 -0.9534 18 14 5.7770 -7.7684 1.6983 19 1 4.5909 -8.3323 2.3916 20 1 6.6214 -8.8753 1.1815 21 1 6.5657 -6.9493 2.6535 22 6 3.1330 -3.5421 -0.1150 23 7 2.1542 -1.1491 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6399 2.1372 -0.0004 28 1 4.1210 2.1367 -0.0010 29 1 5.9375 -2.0933 -1.0435 30 1 4.4801 -2.1756 -2.0809 31 1 6.0972 -4.4220 -0.8711 32 1 5.1758 -4.3876 -2.4051 33 1 3.6606 -6.2642 -1.9354 34 1 6.1463 -7.7615 -1.1202 35 1 2.3472 -3.2833 -0.8246 36 1 2.7046 -3.7720 0.8606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:21 Heat of formation + Delta-G solvation = 11.585424 kcal Electronic energy + Delta-G solvation = -20925.775041 eV Core-core repulsion = 17795.574789 eV Total energy + Delta-G solvation = -3130.200252 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.00226 -39.79598 -37.80152 -36.85782 -34.19957 -34.04701 -33.33943 -30.55777 -30.08397 -28.76664 -26.75609 -24.35225 -23.77967 -22.26478 -21.39060 -20.00571 -19.13133 -18.24972 -17.54227 -16.93324 -16.54171 -15.94476 -15.72029 -15.59651 -14.97245 -14.71445 -14.60488 -14.39456 -14.12889 -13.96983 -13.96163 -13.46292 -13.33647 -13.18163 -13.00421 -12.86327 -12.80348 -12.55483 -12.40705 -12.28605 -12.03416 -11.07392 -11.04538 -10.66199 -10.60095 -10.47245 -10.21593 -9.19811 -8.23886 -6.37087 -0.39720 0.24732 1.39630 1.40196 1.48053 1.57970 1.91603 2.37498 2.44388 2.78606 2.85397 3.03378 3.33018 3.70757 3.80564 3.95564 4.01639 4.12999 4.20015 4.32791 4.43385 4.48512 4.74412 4.80901 4.89164 4.90325 4.91792 5.03573 5.10588 5.20098 5.25331 5.50136 5.56784 5.59888 5.73118 6.03890 6.14808 6.41894 6.66493 6.96397 7.31185 7.40066 8.81936 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022102 B = 0.005669 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.563511 B = 4938.183328 C = 5519.601873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.172 3.828 3 C -0.187 4.187 4 C 0.010 3.990 5 C -0.131 4.131 6 C 0.285 3.715 7 N -0.460 5.460 8 C 0.341 3.659 9 N -0.464 5.464 10 C 0.053 3.947 11 C -0.113 4.113 12 C 0.233 3.767 13 O -0.596 6.596 14 C -0.548 4.548 15 H 0.050 0.950 16 C 0.029 3.971 17 N -0.912 5.912 18 Si 0.957 3.043 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.087 3.913 23 N -0.544 5.544 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.066 0.934 27 H 0.192 0.808 28 H 0.181 0.819 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.379 0.621 34 H 0.270 0.730 35 H 0.062 0.938 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.239 17.701 -0.239 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.032 3.968 3 C -0.208 4.208 4 C -0.017 4.017 5 C -0.140 4.140 6 C -0.029 4.029 7 N -0.136 5.136 8 C 0.106 3.894 9 N -0.180 5.180 10 C -0.073 4.073 11 C -0.151 4.151 12 C 0.193 3.807 13 O -0.404 6.404 14 C -0.586 4.586 15 H 0.068 0.932 16 C -0.171 4.171 17 N -0.552 5.552 18 Si 0.782 3.218 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.204 1.204 22 C -0.039 4.039 23 N -0.259 5.259 24 H 0.114 0.886 25 H 0.132 0.868 26 H 0.085 0.915 27 H 0.209 0.791 28 H 0.198 0.802 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.229 0.771 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.952 17.067 0.293 18.831 hybrid contribution 0.899 -0.898 0.058 1.271 sum -7.054 16.170 0.351 17.645 Atomic orbital electron populations 1.20950 0.86023 1.04890 1.04530 1.22148 0.98769 0.87608 0.88232 1.22199 0.93530 1.00272 1.04772 1.21916 0.95038 0.95730 0.89016 1.16600 0.84624 0.95183 1.17634 1.25451 0.92500 0.92396 0.92539 1.81228 1.12958 1.08539 1.10903 1.20140 0.88676 0.89728 0.90821 1.61941 1.18173 1.00939 1.36951 1.23176 0.96505 0.98609 0.88985 1.22697 1.01094 0.91759 0.99598 1.19484 0.86300 0.88128 0.86793 1.86077 1.45519 1.45816 1.62995 1.21799 1.31399 1.11600 0.93760 0.93151 1.25647 0.94981 0.98218 0.98295 1.69745 1.36818 1.28391 1.20260 0.85636 0.78275 0.78245 0.79600 1.19663 1.20312 1.20450 1.22571 0.92466 0.88120 1.00754 1.67680 1.07275 1.31908 1.19034 0.88646 0.86769 0.91514 0.79090 0.80152 0.90542 0.92239 0.93087 0.92513 0.77084 0.92097 0.92005 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.16 71.23 0.72 -0.68 16 2 C 0.17 3.52 6.78 42.57 0.29 3.81 16 3 C -0.19 -2.57 9.70 22.33 0.22 -2.36 16 4 C 0.01 0.18 9.90 22.72 0.23 0.40 16 5 C -0.13 -3.66 5.63 -21.05 -0.12 -3.78 16 6 C 0.29 9.21 12.64 88.33 1.12 10.32 16 7 N -0.46 -16.68 18.02 19.00 0.34 -16.34 16 8 C 0.34 11.65 6.23 133.62 0.83 12.48 16 9 N -0.46 -19.31 5.13 -687.07 -3.53 -22.83 16 10 C 0.05 2.17 5.50 86.45 0.48 2.65 16 11 C -0.11 -5.47 5.56 31.49 0.18 -5.30 16 12 C 0.23 12.00 1.06 -10.65 -0.01 11.99 16 13 O -0.60 -31.63 12.95 -148.98 -1.93 -33.56 16 14 C -0.55 -30.63 8.09 25.60 0.21 -30.42 16 15 H 0.05 2.86 7.53 -2.91 -0.02 2.84 16 16 C 0.03 1.57 5.02 84.66 0.43 1.99 16 17 N -0.91 -49.84 10.80 21.45 0.23 -49.60 16 18 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 C 0.09 4.00 5.13 86.45 0.44 4.44 16 23 N -0.54 -16.82 8.37 -180.52 -1.51 -18.33 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.11 0.67 8.07 -2.39 -0.02 0.65 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16 28 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 29 H 0.08 3.12 5.88 -2.39 -0.01 3.11 16 30 H 0.06 2.25 7.97 -2.39 -0.02 2.23 16 31 H 0.05 2.74 7.25 -2.39 -0.02 2.72 16 32 H 0.06 2.73 7.98 -2.38 -0.02 2.71 16 33 H 0.38 20.40 7.28 -74.06 -0.54 19.86 16 34 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 35 H 0.06 2.78 7.19 -2.39 -0.02 2.76 16 36 H 0.07 3.36 7.67 -2.38 -0.02 3.34 16 Total: -1.00 -67.55 305.09 1.21 -66.34 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.58 Total: 22.81 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.00 Total: 5.56 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.46 Total: -107.11 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.93 Total: -33.56 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -67.55 1.21 -66.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.928 kcal (2) G-P(sol) polarization free energy of solvation -67.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds