Wall clock time and date at job start Mon Mar 30 2020 01:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34952 * 119.69832 * 2 1 4 4 C 1.40470 * 120.30108 * 180.02562 * 3 2 1 5 5 C 1.36014 * 119.69479 * 359.97438 * 4 3 2 6 6 C 1.40935 * 119.32951 * 0.02562 * 5 4 3 7 7 N 1.32557 * 132.32547 * 179.97438 * 6 5 4 8 8 C 1.33517 * 109.15560 * 180.02562 * 7 6 5 9 9 C 1.50702 * 125.68727 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.46938 * 305.02296 * 9 8 7 11 11 N 1.46507 * 109.47026 * 180.02562 * 10 9 8 12 12 C 1.34769 * 119.99855 * 180.02562 * 11 10 9 13 13 O 1.21690 * 120.00455 * 359.97438 * 12 11 10 14 14 C 1.46377 * 119.99751 * 180.02562 * 12 11 10 15 15 H 1.08003 * 120.00121 * 359.97438 * 14 12 11 16 16 C 1.40044 * 119.99804 * 180.02562 * 14 12 11 17 17 N 1.30676 * 120.00448 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99846 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47290 * 89.99852 * 18 16 14 20 20 H 1.48504 * 109.47239 * 209.99638 * 18 16 14 21 21 H 1.48501 * 109.47120 * 329.99607 * 18 16 14 22 22 C 1.35108 * 108.62809 * 359.97438 * 8 7 6 23 23 N 1.36482 * 119.69644 * 180.02562 * 2 1 3 24 24 H 1.08991 * 109.47073 * 269.97378 * 1 2 3 25 25 H 1.08997 * 109.47153 * 29.97648 * 1 2 3 26 26 H 1.09002 * 109.46695 * 149.97323 * 1 2 3 27 27 H 1.08004 * 119.84527 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.15117 * 180.02562 * 4 3 2 29 29 H 1.08009 * 120.33414 * 180.29330 * 5 4 3 30 30 H 1.09004 * 109.46942 * 65.02052 * 9 8 7 31 31 H 1.08997 * 109.47243 * 185.02243 * 9 8 7 32 32 H 1.09004 * 109.47105 * 299.99657 * 10 9 8 33 33 H 1.08997 * 109.47196 * 59.99918 * 10 9 8 34 34 H 0.96994 * 119.99672 * 359.97438 * 11 10 9 35 35 H 0.97003 * 119.99975 * 180.02562 * 17 16 14 36 36 H 1.07994 * 126.41167 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1756 1.1723 0.0000 4 6 3.5802 1.1870 -0.0005 5 6 4.2664 0.0127 -0.0005 6 6 3.5538 -1.2033 -0.0005 7 7 3.9480 -2.4688 -0.0010 8 6 2.8741 -3.2622 -0.0013 9 6 2.8944 -4.7691 -0.0013 10 6 3.7294 -5.2679 -1.1823 11 7 3.7486 -6.7328 -1.1827 12 6 4.4280 -7.3976 -2.1381 13 8 5.0252 -6.7811 -3.0007 14 6 4.4467 -8.8612 -2.1387 15 1 3.9164 -9.4084 -1.3734 16 6 5.1532 -9.5520 -3.1312 17 7 5.7954 -8.8900 -4.0569 18 14 5.1777 -11.4199 -3.1316 19 1 4.0388 -11.9297 -3.9367 20 1 6.4540 -11.8981 -3.7213 21 1 5.0598 -11.9168 -1.7372 22 6 1.7662 -2.4889 -0.0005 23 7 2.1831 -1.1856 -0.0005 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6281 2.1033 0.0004 28 1 4.1128 2.1266 -0.0001 29 1 5.3465 0.0120 0.0038 30 1 3.3329 -5.1266 0.9304 31 1 1.8757 -5.1462 -0.0916 32 1 3.2908 -4.9104 -2.1140 33 1 4.7480 -4.8908 -1.0920 34 1 3.2729 -7.2242 -0.4949 35 1 6.2844 -9.3685 -4.7445 36 1 0.7431 -2.8347 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592939757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:20 Heat of formation + Delta-G solvation = 40.263336 kcal Electronic energy + Delta-G solvation = -19519.601342 eV Core-core repulsion = 16390.644658 eV Total energy + Delta-G solvation = -3128.956684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.88797 -38.01782 -37.11741 -34.30417 -34.07273 -32.37664 -31.56706 -30.23404 -28.27852 -27.46496 -26.06934 -23.29798 -22.82469 -21.68818 -20.20840 -19.53427 -17.90672 -17.03428 -16.67521 -16.14670 -15.70906 -15.19905 -14.46852 -14.45064 -14.36150 -13.94105 -13.80902 -13.66540 -13.16367 -12.60369 -12.53077 -12.34379 -12.09247 -11.77339 -11.64247 -11.14710 -11.07114 -11.01916 -10.92511 -10.55390 -10.36929 -10.15371 -9.92119 -8.77208 -8.67792 -7.86881 -7.50380 -7.36484 -6.09527 -4.54905 0.58765 1.17776 2.46554 2.79539 3.19615 3.25919 3.29762 3.45015 4.02803 4.15316 4.19981 4.48936 4.54955 4.68926 4.79852 4.92881 4.98781 5.09534 5.21685 5.26217 5.38154 5.54494 5.67808 5.68720 5.75877 5.90146 5.92613 5.98250 6.03284 6.38058 6.64022 6.71782 6.84282 7.03368 7.51504 7.93250 8.04201 8.21628 8.42527 9.10976 9.66026 10.70202 10.89772 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044537 B = 0.002995 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.534627 B = 9345.571196 C = 9659.253003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.088 3.912 3 C -0.153 4.153 4 C -0.104 4.104 5 C -0.081 4.081 6 C 0.223 3.777 7 N -0.479 5.479 8 C 0.081 3.919 9 C -0.050 4.050 10 C 0.143 3.857 11 N -0.769 5.769 12 C 0.555 3.445 13 O -0.580 6.580 14 C -0.546 4.546 15 H 0.067 0.933 16 C 0.086 3.914 17 N -0.769 5.769 18 Si 0.908 3.092 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.101 4.101 23 N -0.360 5.360 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.379 0.621 35 H 0.267 0.733 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.533 19.305 10.586 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.016 4.016 3 C -0.174 4.174 4 C -0.128 4.128 5 C -0.101 4.101 6 C -0.020 4.020 7 N -0.199 5.199 8 C -0.052 4.052 9 C -0.089 4.089 10 C 0.017 3.983 11 N -0.425 5.425 12 C 0.358 3.642 13 O -0.463 6.463 14 C -0.583 4.583 15 H 0.086 0.914 16 C -0.133 4.133 17 N -0.398 5.398 18 Si 0.732 3.268 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.232 4.232 23 N -0.033 5.033 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.158 0.842 29 H 0.168 0.832 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.210 0.790 35 H 0.078 0.922 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.209 19.444 9.763 24.034 hybrid contribution -1.083 -0.806 0.307 1.384 sum -11.292 18.638 10.070 24.006 Atomic orbital electron populations 1.20913 0.88130 1.04525 1.03738 1.20275 0.95106 0.84047 1.02164 1.20558 0.94767 0.96389 1.05650 1.20973 0.93672 0.98246 0.99909 1.20292 1.00793 0.87800 1.01215 1.21042 0.80013 0.94776 1.06181 1.70721 1.29510 0.97678 1.21978 1.20816 0.87788 0.96377 1.00249 1.20229 1.01625 0.86350 1.00649 1.20722 0.99037 0.83336 0.95183 1.46132 1.58648 1.04084 1.33642 1.18210 0.77897 0.88381 0.79701 1.90603 1.47208 1.69772 1.38716 1.20891 1.34191 0.89807 1.13422 0.91445 1.25717 0.93499 0.99744 0.94321 1.70037 1.23152 1.36314 1.10310 0.86382 0.77990 0.83308 0.79076 1.19824 1.20520 1.18941 1.22362 1.01096 0.80516 1.19183 1.42791 1.08810 1.05556 1.46171 0.89868 0.89321 0.90594 0.83562 0.84156 0.83196 0.89868 0.90127 0.93704 0.92422 0.78987 0.92199 0.80204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.85 36.00 0.35 -0.32 16 2 C 0.09 0.83 6.78 -81.69 -0.55 0.28 16 3 C -0.15 -1.19 9.59 -39.91 -0.38 -1.57 16 4 C -0.10 -0.88 10.07 -39.54 -0.40 -1.27 16 5 C -0.08 -0.93 10.11 -39.36 -0.40 -1.33 16 6 C 0.22 3.35 7.81 -156.05 -1.22 2.13 16 7 N -0.48 -8.56 11.29 -9.00 -0.10 -8.66 16 8 C 0.08 1.30 6.33 -82.97 -0.53 0.78 16 9 C -0.05 -0.79 5.89 -27.88 -0.16 -0.95 16 10 C 0.14 3.05 5.64 -4.04 -0.02 3.02 16 11 N -0.77 -18.21 5.55 -61.72 -0.34 -18.55 16 12 C 0.55 16.61 7.75 -12.99 -0.10 16.51 16 13 O -0.58 -19.91 15.02 5.20 0.08 -19.83 16 14 C -0.55 -15.96 9.54 -35.63 -0.34 -16.30 16 15 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 16 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 17 N -0.77 -23.92 11.83 55.55 0.66 -23.26 16 18 Si 0.91 20.68 29.56 -169.99 -5.02 15.66 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 C -0.10 -1.33 10.96 -16.43 -0.18 -1.51 16 23 N -0.36 -4.66 2.94 -58.46 -0.17 -4.83 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.34 8.07 -51.93 -0.42 -0.08 16 26 H 0.08 0.47 7.49 -51.93 -0.39 0.08 16 27 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 28 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.38 7.65 8.45 -40.82 -0.35 7.30 16 35 H 0.27 7.52 8.29 -40.82 -0.34 7.18 16 36 H 0.18 1.74 7.80 -52.49 -0.41 1.33 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -39.31 316.11 -8.66 -47.97 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.49 Total: 4.89 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -4.02 Total: 1.86 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.04 Total: -55.30 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.08 Total: -19.83 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -39.31 -8.66 -47.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592939757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.232 kcal (2) G-P(sol) polarization free energy of solvation -39.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds