Wall clock time and date at job start Mon Mar 30 2020 01:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34952 * 119.69832 * 2 1 4 4 C 1.40470 * 120.30108 * 180.02562 * 3 2 1 5 5 C 1.36014 * 119.69479 * 359.97438 * 4 3 2 6 6 C 1.40935 * 119.32951 * 0.02562 * 5 4 3 7 7 N 1.32557 * 132.32547 * 179.97438 * 6 5 4 8 8 C 1.33517 * 109.15560 * 180.02562 * 7 6 5 9 9 C 1.50702 * 125.68727 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.46938 * 305.02296 * 9 8 7 11 11 N 1.46507 * 109.47026 * 180.02562 * 10 9 8 12 12 C 1.34769 * 119.99855 * 180.02562 * 11 10 9 13 13 O 1.21690 * 120.00455 * 359.97438 * 12 11 10 14 14 C 1.46377 * 119.99751 * 180.02562 * 12 11 10 15 15 H 1.08003 * 120.00121 * 359.97438 * 14 12 11 16 16 C 1.40044 * 119.99804 * 180.02562 * 14 12 11 17 17 N 1.30676 * 120.00448 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99846 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47290 * 89.99852 * 18 16 14 20 20 H 1.48504 * 109.47239 * 209.99638 * 18 16 14 21 21 H 1.48501 * 109.47120 * 329.99607 * 18 16 14 22 22 C 1.35108 * 108.62809 * 359.97438 * 8 7 6 23 23 N 1.36482 * 119.69644 * 180.02562 * 2 1 3 24 24 H 1.08991 * 109.47073 * 269.97378 * 1 2 3 25 25 H 1.08997 * 109.47153 * 29.97648 * 1 2 3 26 26 H 1.09002 * 109.46695 * 149.97323 * 1 2 3 27 27 H 1.08004 * 119.84527 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.15117 * 180.02562 * 4 3 2 29 29 H 1.08009 * 120.33414 * 180.29330 * 5 4 3 30 30 H 1.09004 * 109.46942 * 65.02052 * 9 8 7 31 31 H 1.08997 * 109.47243 * 185.02243 * 9 8 7 32 32 H 1.09004 * 109.47105 * 299.99657 * 10 9 8 33 33 H 1.08997 * 109.47196 * 59.99918 * 10 9 8 34 34 H 0.96994 * 119.99672 * 359.97438 * 11 10 9 35 35 H 0.97003 * 119.99975 * 180.02562 * 17 16 14 36 36 H 1.07994 * 126.41167 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1756 1.1723 0.0000 4 6 3.5802 1.1870 -0.0005 5 6 4.2664 0.0127 -0.0005 6 6 3.5538 -1.2033 -0.0005 7 7 3.9480 -2.4688 -0.0010 8 6 2.8741 -3.2622 -0.0013 9 6 2.8944 -4.7691 -0.0013 10 6 3.7294 -5.2679 -1.1823 11 7 3.7486 -6.7328 -1.1827 12 6 4.4280 -7.3976 -2.1381 13 8 5.0252 -6.7811 -3.0007 14 6 4.4467 -8.8612 -2.1387 15 1 3.9164 -9.4084 -1.3734 16 6 5.1532 -9.5520 -3.1312 17 7 5.7954 -8.8900 -4.0569 18 14 5.1777 -11.4199 -3.1316 19 1 4.0388 -11.9297 -3.9367 20 1 6.4540 -11.8981 -3.7213 21 1 5.0598 -11.9168 -1.7372 22 6 1.7662 -2.4889 -0.0005 23 7 2.1831 -1.1856 -0.0005 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6281 2.1033 0.0004 28 1 4.1128 2.1266 -0.0001 29 1 5.3465 0.0120 0.0038 30 1 3.3329 -5.1266 0.9304 31 1 1.8757 -5.1462 -0.0916 32 1 3.2908 -4.9104 -2.1140 33 1 4.7480 -4.8908 -1.0920 34 1 3.2729 -7.2242 -0.4949 35 1 6.2844 -9.3685 -4.7445 36 1 0.7431 -2.8347 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592939757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:19 Heat of formation + Delta-G solvation = 11.784247 kcal Electronic energy + Delta-G solvation = -19520.836288 eV Core-core repulsion = 16390.644658 eV Total energy + Delta-G solvation = -3130.191630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.82921 -39.49942 -38.70375 -35.91694 -35.06800 -34.55987 -32.94522 -31.35916 -29.60790 -28.26062 -27.96401 -24.77115 -23.73593 -22.65041 -21.74011 -21.31229 -19.23495 -18.66607 -17.57850 -17.40162 -17.12353 -16.51103 -16.16810 -15.94274 -15.83883 -15.18062 -14.83282 -14.49748 -14.25197 -14.06707 -13.97859 -13.47833 -13.23979 -13.01548 -12.99622 -12.76614 -12.61454 -12.42808 -12.36824 -12.07473 -12.00029 -11.90556 -11.03986 -10.92630 -9.90389 -9.63171 -9.51081 -8.75722 -8.28604 -6.86020 -0.18218 0.32188 1.40805 1.43563 1.59005 1.61821 1.79969 2.26160 2.47306 2.54977 3.06341 3.23860 3.47572 3.61730 3.73192 3.90347 4.11494 4.18641 4.22456 4.28379 4.42213 4.58803 4.61874 4.66858 4.71322 4.85077 5.03616 5.08869 5.10372 5.15180 5.26968 5.32313 5.60200 5.64819 5.87647 6.16274 6.22921 6.26837 6.86281 6.91122 7.57403 8.49695 8.68143 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044537 B = 0.002995 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.534627 B = 9345.571196 C = 9659.253003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.072 3.928 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.124 4.124 6 C 0.202 3.798 7 N -0.543 5.543 8 C 0.042 3.958 9 C -0.030 4.030 10 C 0.153 3.847 11 N -0.753 5.753 12 C 0.533 3.467 13 O -0.638 6.638 14 C -0.571 4.571 15 H 0.093 0.907 16 C 0.023 3.977 17 N -0.826 5.826 18 Si 1.005 2.995 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.246 1.246 22 C -0.092 4.092 23 N -0.365 5.365 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.191 0.809 28 H 0.179 0.821 29 H 0.150 0.850 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.399 0.601 35 H 0.274 0.726 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.222 20.010 11.916 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.032 4.032 3 C -0.168 4.168 4 C -0.099 4.099 5 C -0.145 4.145 6 C -0.041 4.041 7 N -0.264 5.264 8 C -0.090 4.090 9 C -0.069 4.069 10 C 0.028 3.972 11 N -0.408 5.408 12 C 0.337 3.663 13 O -0.526 6.526 14 C -0.608 4.608 15 H 0.111 0.889 16 C -0.191 4.191 17 N -0.455 5.455 18 Si 0.823 3.177 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.169 1.169 22 C -0.223 4.223 23 N -0.037 5.037 24 H 0.116 0.884 25 H 0.133 0.867 26 H 0.090 0.910 27 H 0.209 0.791 28 H 0.196 0.804 29 H 0.168 0.832 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -12.956 20.170 11.159 26.443 hybrid contribution -0.278 -0.762 -0.092 0.817 sum -13.234 19.408 11.066 25.967 Atomic orbital electron populations 1.21048 0.85285 1.05692 1.04974 1.21163 0.97138 0.83252 1.01600 1.21202 0.94638 0.97558 1.03416 1.21515 0.94393 0.98390 0.95589 1.20541 1.01248 0.88000 1.04667 1.21482 0.81558 0.94824 1.06259 1.70594 1.31407 0.99601 1.24793 1.20882 0.88792 0.96347 1.03002 1.20042 1.02065 0.86942 0.97806 1.20617 0.97947 0.81700 0.96950 1.45779 1.57261 1.05162 1.32628 1.18754 0.77975 0.89464 0.80068 1.90553 1.49798 1.70950 1.41262 1.21455 1.34884 0.89824 1.14617 0.88891 1.27106 0.92107 1.06808 0.93105 1.70226 1.24176 1.39655 1.11472 0.84926 0.78454 0.74125 0.80148 1.18381 1.19916 1.16948 1.22728 1.01597 0.80479 1.17477 1.42992 1.08297 1.06550 1.45847 0.88431 0.86650 0.90952 0.79141 0.80378 0.83223 0.89277 0.86802 0.96077 0.96273 0.76645 0.91587 0.76792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.85 71.24 0.70 -0.19 16 2 C 0.07 1.16 6.78 41.08 0.28 1.44 16 3 C -0.15 -1.74 9.59 22.06 0.21 -1.53 16 4 C -0.08 -1.07 10.07 22.30 0.22 -0.85 16 5 C -0.12 -2.91 10.11 22.41 0.23 -2.68 16 6 C 0.20 6.34 7.81 134.11 1.05 7.38 16 7 N -0.54 -20.88 11.29 -182.40 -2.06 -22.94 16 8 C 0.04 1.40 6.33 41.58 0.26 1.66 16 9 C -0.03 -0.98 5.89 29.85 0.18 -0.80 16 10 C 0.15 6.98 5.64 86.38 0.49 7.46 16 11 N -0.75 -36.90 5.55 -467.40 -2.59 -39.49 16 12 C 0.53 33.28 7.75 86.36 0.67 33.95 16 13 O -0.64 -46.44 15.02 -4.32 -0.06 -46.51 16 14 C -0.57 -33.80 9.54 24.83 0.24 -33.57 16 15 H 0.09 4.84 7.85 -2.91 -0.02 4.82 16 16 C 0.02 1.35 5.50 85.30 0.47 1.82 16 17 N -0.83 -53.02 11.83 21.83 0.26 -52.76 16 18 Si 1.00 42.22 29.56 68.60 2.03 44.25 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 22 C -0.09 -2.39 10.96 83.19 0.91 -1.48 16 23 N -0.36 -9.20 2.94 -338.85 -1.00 -10.20 16 24 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 25 H 0.11 0.31 8.07 -2.39 -0.02 0.30 16 26 H 0.07 0.66 7.49 -2.39 -0.02 0.64 16 27 H 0.19 0.54 8.06 -2.91 -0.02 0.51 16 28 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 29 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.11 2.86 8.10 -2.39 -0.02 2.84 16 32 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.40 16.13 8.45 -92.71 -0.78 15.34 16 35 H 0.27 15.89 8.29 -92.71 -0.77 15.12 16 36 H 0.22 3.68 7.80 -2.91 -0.02 3.65 16 Total: -1.00 -93.89 316.11 2.79 -91.10 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.32 Total: 23.92 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 5.90 Total: 12.63 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -5.39 Total: -125.40 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.06 Total: -46.51 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -93.89 2.79 -91.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592939757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.887 kcal (2) G-P(sol) polarization free energy of solvation -93.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds