Wall clock time and date at job start Mon Mar 30 2020 01:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30323 * 119.39745 * 2 1 4 4 N 1.28190 * 123.68725 * 180.02562 * 3 2 1 5 5 C 1.46496 * 119.10514 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47191 * 268.36857 * 5 4 3 7 7 C 1.50700 * 115.54817 * 55.66523 * 6 5 4 8 8 H 1.08006 * 120.00173 * 219.50675 * 7 6 5 9 9 C 1.37876 * 120.00007 * 39.50125 * 7 6 5 10 10 N 1.31511 * 120.00055 * 10.30576 * 9 7 6 11 11 Si 1.86805 * 119.99735 * 190.30536 * 9 7 6 12 12 H 1.48504 * 109.47081 * 179.97438 * 11 9 7 13 13 H 1.48492 * 109.47282 * 300.00077 * 11 9 7 14 14 H 1.48501 * 109.47301 * 60.00598 * 11 9 7 15 15 C 1.52999 * 117.51982 * 201.35869 * 6 5 4 16 16 C 1.52999 * 117.50220 * 269.99200 * 6 5 4 17 17 C 1.34826 * 121.78802 * 0.28195 * 4 3 2 18 18 O 1.21923 * 120.76944 * 179.72406 * 17 4 3 19 19 C 1.46831 * 118.45973 * 359.48015 * 17 4 3 20 20 C 1.43197 * 121.54565 * 180.25525 * 19 17 4 21 21 N 4.82144 * 136.18780 * 180.02562 * 2 1 3 22 22 C 1.39416 * 116.91174 * 0.49334 * 19 17 4 23 23 C 1.50701 * 121.02190 * 179.73971 * 22 19 17 24 24 H 1.08991 * 109.47216 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47071 * 119.99953 * 1 2 3 26 26 H 1.09004 * 109.46449 * 239.99322 * 1 2 3 27 27 H 1.09005 * 109.46932 * 148.37323 * 5 4 3 28 28 H 1.08994 * 109.47480 * 28.37268 * 5 4 3 29 29 H 0.97005 * 119.99600 * 174.98210 * 10 9 7 30 30 H 1.09004 * 117.50018 * 214.97082 * 15 6 5 31 31 H 1.08997 * 117.49752 * 359.97438 * 15 6 5 32 32 H 1.08993 * 117.49905 * 359.97438 * 16 6 5 33 33 H 1.09003 * 117.49958 * 144.99520 * 16 6 5 34 34 H 1.09003 * 109.47187 * 270.02180 * 23 22 19 35 35 H 1.08998 * 109.47598 * 30.02200 * 23 22 19 36 36 H 1.09003 * 109.46835 * 150.02304 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1468 1.1354 0.0000 4 7 3.4251 1.2313 -0.0005 5 6 4.0399 2.5610 0.0001 6 6 4.2907 3.0076 -1.4416 7 6 3.0815 3.0093 -2.3411 8 1 3.1703 2.6799 -3.3658 9 6 1.8619 3.4312 -1.8558 10 7 1.7891 4.0196 -0.6819 11 14 0.3128 3.1669 -2.8658 12 1 -0.8576 3.7054 -2.1272 13 1 0.4442 3.8705 -4.1669 14 1 0.1202 1.7142 -3.1059 15 6 5.3442 4.0928 -1.6724 16 6 5.6378 2.6447 -2.0695 17 6 4.2191 0.1416 -0.0067 18 8 5.4331 0.2544 -0.0121 19 6 3.5879 -1.1841 -0.0013 20 6 4.3676 -2.3851 -0.0019 21 7 4.9863 -3.3379 -0.0015 22 6 2.1942 -1.2194 -0.0007 23 6 1.4504 -2.5301 -0.0012 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 -0.3632 -0.5140 0.8900 27 1 4.9869 2.5231 0.5386 28 1 3.3720 3.2700 0.4892 29 1 0.9440 4.3815 -0.3724 30 1 5.1628 4.8079 -2.4749 31 1 5.8586 4.4891 -0.7970 32 1 6.3457 2.0881 -1.4554 33 1 5.6496 2.4070 -3.1333 34 1 1.2710 -2.8457 -1.0290 35 1 2.0452 -3.2856 0.5122 36 1 0.4971 -2.4071 0.5128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594882286.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:37 Heat of formation + Delta-G solvation = 64.512466 kcal Electronic energy + Delta-G solvation = -21533.821810 eV Core-core repulsion = 18405.916647 eV Total energy + Delta-G solvation = -3127.905163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.84845 -39.08228 -38.71682 -37.82284 -36.24132 -34.08426 -33.25493 -31.07880 -28.90702 -27.78568 -27.01953 -25.46588 -23.25496 -22.98360 -21.34554 -20.19461 -19.16400 -18.40445 -17.59717 -17.17318 -16.61898 -16.50533 -15.47423 -15.12698 -14.85822 -14.81896 -14.60172 -14.53581 -14.33427 -13.88729 -13.61156 -13.56719 -13.45967 -13.28902 -13.00444 -12.89750 -12.65267 -12.54970 -12.30127 -12.06953 -11.95118 -11.55230 -11.08926 -10.76438 -10.66318 -10.55956 -9.99356 -9.28833 -7.99971 -6.09275 -0.79600 0.64117 1.08266 1.47427 1.50814 1.57518 1.66330 1.75796 2.50535 2.56141 2.64109 3.07818 3.12656 3.47779 3.62780 3.80601 4.07296 4.20203 4.34718 4.42252 4.54775 4.64541 4.70038 4.75009 4.86939 4.92365 4.96047 4.99178 5.06006 5.13488 5.14884 5.28577 5.41301 5.50810 5.54553 5.89119 6.28603 6.40870 6.60679 6.83046 7.43909 7.54149 9.03593 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.009422 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.815852 B = 2971.125542 C = 4185.983739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.015 3.985 3 N -0.160 5.160 4 N -0.299 5.299 5 C 0.155 3.845 6 C 0.016 3.984 7 C -0.529 4.529 8 H 0.034 0.966 9 C 0.072 3.928 10 N -0.873 5.873 11 Si 0.927 3.073 12 H -0.269 1.269 13 H -0.293 1.293 14 H -0.262 1.262 15 C -0.179 4.179 16 C -0.202 4.202 17 C 0.486 3.514 18 O -0.565 6.565 19 C -0.175 4.175 20 C 0.303 3.697 21 N -0.444 5.444 22 C 0.076 3.924 23 C -0.129 4.129 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.067 0.933 28 H 0.131 0.869 29 H 0.269 0.731 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 -7.840 4.031 12.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.151 4.151 3 N 0.013 4.987 4 N -0.115 5.115 5 C 0.036 3.964 6 C 0.015 3.985 7 C -0.566 4.566 8 H 0.053 0.947 9 C -0.133 4.133 10 N -0.507 5.507 11 Si 0.753 3.247 12 H -0.193 1.193 13 H -0.220 1.220 14 H -0.186 1.186 15 C -0.217 4.217 16 C -0.239 4.239 17 C 0.283 3.717 18 O -0.446 6.446 19 C -0.190 4.190 20 C -0.011 4.011 21 N -0.122 5.122 22 C 0.065 3.935 23 C -0.186 4.186 24 H 0.084 0.916 25 H 0.119 0.881 26 H 0.137 0.863 27 H 0.085 0.915 28 H 0.149 0.851 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.636 -8.226 4.231 11.995 hybrid contribution 0.166 0.044 -0.927 0.943 sum -7.471 -8.182 3.304 11.562 Atomic orbital electron populations 1.20764 0.83483 1.04566 1.05554 1.22355 0.99910 0.85859 1.07006 1.70808 0.95286 1.29017 1.03570 1.46539 1.01834 1.09271 1.53858 1.21726 0.97144 0.79125 0.98439 1.19265 0.88422 0.98360 0.92452 1.20353 0.92921 1.47216 0.96096 0.94735 1.25124 0.99775 0.93058 0.95357 1.69716 1.26982 1.34940 1.19110 0.86117 0.80618 0.79380 0.78575 1.19299 1.21950 1.18612 1.22927 1.05638 0.91016 1.02143 1.22879 1.02325 0.99110 0.99570 1.19193 0.87679 0.85466 0.79329 1.90850 1.13760 1.86521 1.53465 1.17971 0.92507 0.86914 1.21606 1.24512 0.92439 0.91598 0.92506 1.81168 1.07639 1.12220 1.11128 1.21910 0.90169 0.99147 0.82301 1.21314 1.01933 0.89459 1.05852 0.91575 0.88135 0.86282 0.91463 0.85143 0.92140 0.90359 0.89753 0.90538 0.91531 0.86721 0.90417 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 8.99 71.24 0.64 -0.96 16 2 C 0.02 0.44 6.86 43.20 0.30 0.74 16 3 N -0.16 -6.14 8.81 -47.56 -0.42 -6.56 16 4 N -0.30 -12.71 3.00 -466.62 -1.40 -14.11 16 5 C 0.15 7.04 4.82 86.38 0.42 7.46 16 6 C 0.02 0.79 2.00 -52.93 -0.11 0.68 16 7 C -0.53 -27.46 8.57 25.60 0.22 -27.24 16 8 H 0.03 1.89 7.84 -2.91 -0.02 1.87 16 9 C 0.07 3.49 4.03 84.65 0.34 3.83 16 10 N -0.87 -42.12 10.56 21.45 0.23 -41.90 16 11 Si 0.93 38.36 29.55 68.60 2.03 40.39 16 12 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 13 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 15 C -0.18 -7.99 9.96 30.60 0.30 -7.68 16 16 C -0.20 -9.37 9.77 30.60 0.30 -9.08 16 17 C 0.49 20.72 7.66 86.48 0.66 21.38 16 18 O -0.57 -27.35 15.34 -5.06 -0.08 -27.42 16 19 C -0.17 -5.96 5.96 -19.50 -0.12 -6.08 16 20 C 0.30 10.51 13.87 88.33 1.23 11.74 16 21 N -0.44 -16.05 18.54 19.00 0.35 -15.70 16 22 C 0.08 1.93 5.99 -19.16 -0.11 1.81 16 23 C -0.13 -1.82 9.31 71.24 0.66 -1.15 16 24 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 25 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.12 1.24 7.55 -2.38 -0.02 1.22 16 27 H 0.07 2.99 7.40 -2.38 -0.02 2.97 16 28 H 0.13 6.17 6.00 -2.39 -0.01 6.15 16 29 H 0.27 12.34 8.32 -92.70 -0.77 11.57 16 30 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 31 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 32 H 0.08 3.59 7.27 -2.39 -0.02 3.58 16 33 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.15 7.25 -2.39 -0.02 1.13 16 36 H 0.13 0.88 6.76 -2.39 -0.02 0.87 16 Total: -1.00 -64.07 312.09 6.55 -57.52 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.11 Total: 12.34 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.73 Total: -4.55 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -1.24 Total: -78.27 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.08 Total: -27.42 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -64.07 6.55 -57.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594882286.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.030 kcal (2) G-P(sol) polarization free energy of solvation -64.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds