Wall clock time and date at job start Mon Mar 30 2020 01:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35278 * 120.01962 * 2 1 4 4 C 1.40929 * 119.84779 * 179.97438 * 3 2 1 5 5 O 1.21818 * 120.08464 * 180.02562 * 4 3 2 6 6 N 1.34737 * 119.83144 * 359.97438 * 4 3 2 7 7 N 1.40043 * 132.30008 * 180.02562 * 6 4 3 8 8 C 1.30977 * 108.42890 * 179.30354 * 7 6 4 9 9 C 1.39583 * 108.62330 * 0.58993 * 8 7 6 10 10 C 1.36269 * 107.87408 * 359.47923 * 9 8 7 11 11 N 1.36235 * 120.01650 * 179.97438 * 2 1 3 12 12 C 1.46505 * 119.93847 * 0.02562 * 11 2 1 13 13 C 1.52992 * 109.47236 * 93.08531 * 12 11 2 14 14 C 1.50705 * 115.54989 * 172.93903 * 13 12 11 15 15 H 1.08004 * 120.00033 * 215.19225 * 14 13 12 16 16 C 1.37879 * 119.99709 * 35.18873 * 14 13 12 17 17 N 1.31515 * 119.99450 * 193.46900 * 16 14 13 18 18 Si 1.86796 * 120.00088 * 13.47428 * 16 14 13 19 19 H 1.48495 * 109.46901 * 267.94014 * 18 16 14 20 20 H 1.48502 * 109.46975 * 27.94050 * 18 16 14 21 21 H 1.48498 * 109.46906 * 147.94298 * 18 16 14 22 22 C 1.52995 * 117.50541 * 318.61176 * 13 12 11 23 23 C 1.53000 * 117.50091 * 27.27357 * 13 12 11 24 24 H 1.09001 * 109.47419 * 264.57933 * 1 2 3 25 25 H 1.09004 * 109.47024 * 24.58077 * 1 2 3 26 26 H 1.08996 * 109.47276 * 144.57729 * 1 2 3 27 27 H 1.07998 * 120.07572 * 359.95784 * 3 2 1 28 28 H 1.07992 * 125.69135 * 180.02562 * 8 7 6 29 29 H 1.07999 * 126.06180 * 179.49245 * 9 8 7 30 30 H 1.08999 * 109.46954 * 333.08526 * 12 11 2 31 31 H 1.09006 * 109.46983 * 213.08938 * 12 11 2 32 32 H 0.97009 * 119.99610 * 180.02562 * 17 16 14 33 33 H 1.08992 * 117.50260 * 215.00320 * 22 13 12 34 34 H 1.09004 * 117.49160 * 0.02562 * 22 13 12 35 35 H 1.09006 * 117.49355 * 359.97289 * 23 13 12 36 36 H 1.09002 * 117.50254 * 144.96484 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1837 1.1713 0.0000 4 6 3.5930 1.1671 0.0005 5 8 4.2068 2.2193 0.0010 6 7 4.2598 -0.0038 0.0016 7 7 5.6262 -0.3102 0.0028 8 6 5.7583 -1.6132 0.0186 9 6 4.4874 -2.1902 0.0145 10 6 3.5704 -1.1822 0.0072 11 7 2.1885 -1.1796 0.0005 12 6 1.4549 -2.4478 0.0005 13 6 1.2673 -2.9285 -1.4398 14 6 0.6740 -4.3053 -1.5934 15 1 0.9961 -4.9450 -2.4019 16 6 -0.2799 -4.7483 -0.7019 17 7 -0.6049 -6.0221 -0.6658 18 14 -1.1107 -3.5391 0.4544 19 1 -0.3606 -3.4836 1.7348 20 1 -1.1280 -2.1910 -0.1681 21 1 -2.5039 -3.9817 0.7157 22 6 0.9017 -1.8803 -2.4925 23 6 2.3065 -2.4879 -2.4726 24 1 -0.3634 -0.0971 1.0231 25 1 -0.3633 0.9346 -0.4275 26 1 -0.3633 -0.8374 -0.5956 27 1 1.6453 2.1075 -0.0007 28 1 6.6945 -2.1516 0.0238 29 1 4.2693 -3.2479 0.0168 30 1 0.4796 -2.3034 0.4653 31 1 2.0182 -3.1933 0.5620 32 1 -1.2764 -6.3337 -0.0388 33 1 0.2321 -2.1863 -3.2962 34 1 0.7953 -0.8480 -2.1590 35 1 3.1237 -1.8551 -2.1260 36 1 2.5615 -3.1939 -3.2630 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596250081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:34 Heat of formation + Delta-G solvation = 105.597371 kcal Electronic energy + Delta-G solvation = -21852.352158 eV Core-core repulsion = 18726.228570 eV Total energy + Delta-G solvation = -3126.123588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.83743 -40.68119 -39.95591 -37.77944 -34.46369 -34.11725 -33.74196 -31.02912 -29.31252 -29.11155 -27.07458 -24.74192 -23.48317 -23.17835 -22.17086 -20.99144 -20.03282 -19.00750 -18.61836 -17.85180 -17.58732 -16.94623 -16.47859 -16.08662 -15.43454 -15.36294 -14.80800 -14.72015 -14.64073 -14.45924 -14.03254 -13.99803 -13.78028 -13.48450 -13.09076 -12.68588 -12.52530 -12.30643 -12.05253 -11.63477 -11.55413 -11.33843 -11.21332 -10.91923 -10.72299 -10.49164 -10.36081 -8.91229 -8.33808 -6.34848 -0.15966 0.05822 0.80239 1.24303 1.34866 1.40667 1.54010 1.67736 2.21939 2.30648 2.74622 3.00809 3.27241 3.45320 3.60449 3.69284 3.85494 3.95564 4.08514 4.27315 4.28970 4.36207 4.46221 4.50191 4.61553 4.72291 4.79642 4.81669 4.89672 5.04610 5.12628 5.24889 5.40612 5.42366 5.51224 5.62660 5.96165 6.04004 6.28064 6.65337 6.76880 7.24236 8.81592 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023571 B = 0.007631 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.601206 B = 3668.358193 C = 4209.976791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.242 3.758 3 C -0.337 4.337 4 C 0.555 3.445 5 O -0.559 6.559 6 N -0.379 5.379 7 N -0.321 5.321 8 C 0.113 3.887 9 C -0.283 4.283 10 C 0.302 3.698 11 N -0.483 5.483 12 C 0.128 3.872 13 C -0.010 4.010 14 C -0.490 4.490 15 H 0.036 0.964 16 C 0.022 3.978 17 N -0.934 5.934 18 Si 0.912 3.088 19 H -0.258 1.258 20 H -0.197 1.197 21 H -0.299 1.299 22 C -0.196 4.196 23 C -0.180 4.180 24 H 0.119 0.881 25 H 0.135 0.865 26 H 0.096 0.904 27 H 0.198 0.802 28 H 0.243 0.757 29 H 0.177 0.823 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.270 0.730 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 8.514 4.068 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.130 3.870 3 C -0.365 4.365 4 C 0.357 3.643 5 O -0.437 6.437 6 N -0.180 5.180 7 N -0.140 5.140 8 C -0.073 4.073 9 C -0.314 4.314 10 C 0.086 3.914 11 N -0.176 5.176 12 C 0.008 3.992 13 C -0.011 4.011 14 C -0.528 4.528 15 H 0.054 0.946 16 C -0.177 4.177 17 N -0.571 5.571 18 Si 0.738 3.262 19 H -0.183 1.183 20 H -0.121 1.121 21 H -0.227 1.227 22 C -0.234 4.234 23 C -0.218 4.218 24 H 0.137 0.863 25 H 0.153 0.847 26 H 0.114 0.886 27 H 0.215 0.785 28 H 0.259 0.741 29 H 0.194 0.806 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.517 10.053 4.133 10.975 hybrid contribution -0.604 -1.056 0.143 1.225 sum 0.913 8.997 4.275 10.003 Atomic orbital electron populations 1.21981 0.84499 1.08095 1.06661 1.21368 0.97022 0.83491 0.85123 1.21405 0.89291 1.00088 1.25760 1.17679 0.89389 0.80847 0.76335 1.90806 1.70900 1.30869 1.51146 1.48193 1.06041 1.06594 1.57176 1.77767 0.90224 1.17693 1.28320 1.24744 1.00164 0.89836 0.92599 1.21161 0.90124 0.99817 1.20332 1.19029 0.83344 0.88848 1.00163 1.43618 1.01479 1.08058 1.64494 1.22294 0.96664 0.81521 0.98750 1.19435 1.00752 0.93758 0.87192 1.20314 1.22172 0.97033 1.13260 0.94604 1.25910 0.96772 0.96398 0.98652 1.70061 1.32587 1.16097 1.38349 0.86617 0.77678 0.82280 0.79610 1.18312 1.12114 1.22695 1.23344 0.97813 0.97974 1.04267 1.22821 0.92302 1.03572 1.03074 0.86309 0.84680 0.88619 0.78487 0.74121 0.80578 0.88195 0.87873 0.92102 0.89655 0.88846 0.90307 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 7.95 71.23 0.57 -2.23 16 2 C 0.24 6.12 5.32 41.19 0.22 6.34 16 3 C -0.34 -9.28 9.54 22.25 0.21 -9.06 16 4 C 0.55 20.55 7.69 84.91 0.65 21.20 16 5 O -0.56 -24.45 17.91 -4.73 -0.08 -24.53 16 6 N -0.38 -13.77 3.81 -317.16 -1.21 -14.97 16 7 N -0.32 -11.26 12.64 -57.14 -0.72 -11.98 16 8 C 0.11 2.96 11.99 85.14 1.02 3.98 16 9 C -0.28 -8.03 9.56 22.14 0.21 -7.82 16 10 C 0.30 9.72 5.38 131.38 0.71 10.43 16 11 N -0.48 -14.35 1.98 -507.14 -1.00 -15.36 16 12 C 0.13 4.11 3.65 86.38 0.31 4.42 16 13 C -0.01 -0.37 1.81 -52.93 -0.10 -0.46 16 14 C -0.49 -23.85 9.57 25.60 0.24 -23.60 16 15 H 0.04 2.03 8.06 -2.91 -0.02 2.01 16 16 C 0.02 1.10 5.41 84.66 0.46 1.56 16 17 N -0.93 -51.36 13.96 21.45 0.30 -51.06 16 18 Si 0.91 33.18 24.04 68.60 1.65 34.83 16 19 H -0.26 -8.63 7.05 99.48 0.70 -7.93 16 20 H -0.20 -5.60 3.86 99.48 0.38 -5.21 16 21 H -0.30 -11.59 7.11 99.48 0.71 -10.88 16 22 C -0.20 -6.68 8.72 30.62 0.27 -6.42 16 23 C -0.18 -6.54 9.44 30.62 0.29 -6.26 16 24 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.13 1.52 8.03 -2.39 -0.02 1.50 16 26 H 0.10 2.10 2.88 -2.39 -0.01 2.09 16 27 H 0.20 4.16 8.04 -2.91 -0.02 4.14 16 28 H 0.24 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.18 4.56 7.85 -2.91 -0.02 4.54 16 30 H 0.10 3.02 1.67 -2.39 0.00 3.01 16 31 H 0.10 3.36 7.56 -2.38 -0.02 3.34 16 32 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 33 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.09 2.72 5.01 -2.39 -0.01 2.71 16 35 H 0.08 2.80 5.14 -2.38 -0.01 2.79 16 36 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -69.39 283.43 4.80 -64.60 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.80 Total: 26.40 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 5.07 Total: -7.92 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -2.63 Total: -93.37 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.08 Total: -24.53 kcal Atomic # 14 Polarization: 33.18 SS G_CDS: 1.65 Total: 34.83 kcal Total: -69.39 4.80 -64.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596250081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.192 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds