Wall clock time and date at job start Mon Mar 30 2020 00:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00220 * 2 1 4 4 H 1.48499 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47536 * 300.00309 * 3 2 1 6 6 H 1.48506 * 109.46871 * 59.99993 * 3 2 1 7 7 C 1.37881 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00090 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.64481 * 298.30591 * 9 7 2 11 11 C 1.54594 * 110.72534 * 61.45757 * 9 7 2 12 12 C 1.53991 * 105.14285 * 140.49051 * 11 9 7 13 13 N 1.47905 * 107.22505 * 1.12969 * 12 11 9 14 14 C 1.38793 * 110.99953 * 214.25495 * 13 12 11 15 15 N 1.32319 * 120.08158 * 239.59787 * 14 13 12 16 16 C 1.32403 * 122.10291 * 179.66378 * 15 14 13 17 17 C 1.36552 * 121.74918 * 0.64189 * 16 15 14 18 18 C 1.39600 * 119.14006 * 359.68085 * 17 16 15 19 19 N 1.37028 * 134.56629 * 180.02562 * 18 17 16 20 20 H 0.97000 * 125.05514 * 359.97438 * 19 18 17 21 21 C 1.37048 * 109.89602 * 179.97438 * 19 18 17 22 22 C 1.34309 * 109.85112 * 359.97438 * 21 19 18 23 23 C 1.40133 * 120.08260 * 59.86982 * 14 13 12 24 24 C 1.48813 * 105.67450 * 334.90354 * 13 12 11 25 25 H 0.96998 * 119.99949 * 0.02562 * 1 2 3 26 26 H 0.96698 * 113.99619 * 61.69886 * 10 9 7 27 27 H 1.09005 * 110.30718 * 21.57856 * 11 9 7 28 28 H 1.09001 * 110.39460 * 259.45236 * 11 9 7 29 29 H 1.09002 * 109.91707 * 120.58029 * 12 11 9 30 30 H 1.09002 * 109.91668 * 241.67819 * 12 11 9 31 31 H 1.08007 * 119.12270 * 180.29448 * 16 15 14 32 32 H 1.08000 * 120.42873 * 179.70146 * 17 16 15 33 33 H 1.08002 * 125.07720 * 180.02562 * 21 19 18 34 34 H 1.08002 * 126.52998 * 180.02562 * 22 21 19 35 35 H 1.08998 * 110.51915 * 280.54171 * 24 13 12 36 36 H 1.09009 * 110.83927 * 157.56590 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.4503 -2.6187 1.1771 11 6 0.3786 -2.6272 -1.2704 12 6 0.5026 -4.1018 -1.6966 13 7 1.3723 -4.7724 -0.7059 14 6 2.1454 -5.7556 -1.3076 15 7 2.0461 -7.0135 -0.9095 16 6 2.7593 -7.9840 -1.4596 17 6 3.6510 -7.7395 -2.4644 18 6 3.8104 -6.4327 -2.9287 19 7 4.5877 -5.8420 -3.8903 20 1 5.2203 -6.3079 -4.4591 21 6 4.3384 -4.4949 -3.9288 22 6 3.4098 -4.1765 -3.0122 23 6 3.0373 -5.4176 -2.3343 24 6 2.2238 -3.6984 -0.1262 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2278 -1.9347 1.2627 27 1 0.7564 -1.9732 -2.0564 28 1 -0.6597 -2.3849 -1.0440 29 1 -0.4816 -4.5702 -1.7040 30 1 0.9514 -4.1653 -2.6879 31 1 2.6364 -8.9951 -1.1002 32 1 4.2252 -8.5468 -2.8945 33 1 4.8165 -3.7941 -4.5972 34 1 3.0138 -3.1915 -2.8135 35 1 3.0463 -3.4576 -0.7996 36 1 2.6031 -3.9905 0.8532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596287454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:34 Heat of formation + Delta-G solvation = 42.323101 kcal Electronic energy + Delta-G solvation = -21313.801147 eV Core-core repulsion = 18184.933781 eV Total energy + Delta-G solvation = -3128.867366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52588 -38.69596 -37.45833 -34.76070 -32.09238 -31.53623 -30.40781 -29.72922 -28.03559 -27.67390 -24.73469 -22.91460 -22.23185 -20.67872 -20.56125 -19.48721 -18.06607 -17.11343 -16.32472 -15.49179 -15.25185 -14.86326 -14.71111 -14.64101 -14.22121 -13.68305 -13.20850 -13.07704 -12.86842 -12.45240 -12.25564 -11.82705 -11.64950 -11.40952 -11.27230 -11.01170 -10.67185 -10.46247 -10.37515 -9.93556 -9.47609 -9.34832 -9.15859 -8.63294 -8.58047 -8.05942 -7.73386 -7.68610 -6.19139 -4.27425 1.07599 1.75746 2.75085 3.05617 3.21800 3.31101 3.34675 4.08505 4.12682 4.33875 4.76629 4.88155 5.08771 5.11812 5.28192 5.43693 5.56319 5.65136 5.83684 5.92463 5.99811 6.07647 6.20466 6.24510 6.46190 6.56131 6.66380 6.75133 6.91285 6.96340 7.05520 7.35865 7.45181 7.52751 7.53162 7.80335 7.84925 8.20079 8.59026 8.75639 9.41614 9.60987 10.87961 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025150 B = 0.005960 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.044432 B = 4696.584697 C = 5401.300186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.259 3.741 10 O -0.578 6.578 11 C -0.126 4.126 12 C 0.045 3.955 13 N -0.478 5.478 14 C 0.379 3.621 15 N -0.494 5.494 16 C 0.113 3.887 17 C -0.202 4.202 18 C 0.130 3.870 19 N -0.591 5.591 20 H 0.414 0.586 21 C 0.033 3.967 22 C -0.169 4.169 23 C -0.192 4.192 24 C 0.061 3.939 25 H 0.266 0.734 26 H 0.377 0.623 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.155 0.845 32 H 0.126 0.874 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.060 0.940 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.464 -9.744 -9.561 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.219 3.781 10 O -0.386 6.386 11 C -0.165 4.165 12 C -0.081 4.081 13 N -0.200 5.200 14 C 0.141 3.859 15 N -0.205 5.205 16 C -0.038 4.038 17 C -0.226 4.226 18 C 0.015 3.985 19 N -0.195 5.195 20 H 0.250 0.750 21 C -0.091 4.091 22 C -0.195 4.195 23 C -0.202 4.202 24 C -0.064 4.064 25 H 0.076 0.924 26 H 0.227 0.773 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.172 0.828 32 H 0.144 0.856 33 H 0.191 0.809 34 H 0.176 0.824 35 H 0.078 0.922 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.904 -10.709 -8.472 15.301 hybrid contribution 1.510 1.685 -1.810 2.897 sum 8.414 -9.024 -10.282 16.060 Atomic orbital electron populations 1.69745 1.05898 1.27302 1.50265 1.24984 0.94950 0.99317 0.93801 0.86447 0.80143 0.83182 0.77667 1.19705 1.20950 1.20824 1.21596 0.93583 0.90527 1.51668 0.91997 1.19315 0.86614 0.90064 0.82133 1.86171 1.51529 1.56123 1.44813 1.22943 1.02247 0.90835 1.00492 1.23021 0.96185 0.96497 0.92413 1.61679 1.18564 1.10355 1.29448 1.19775 0.88487 0.90585 0.87098 1.67460 1.24789 0.99525 1.28710 1.21963 0.91505 0.98064 0.92251 1.20671 1.05401 0.93417 1.03089 1.18300 0.94105 0.94157 0.91961 1.41691 1.37341 1.07499 1.32966 0.74959 1.21929 1.01179 0.83678 1.02316 1.21973 1.01149 0.97768 0.98602 1.20829 1.02693 0.94638 1.02057 1.23442 0.94855 0.89413 0.98709 0.92395 0.77339 0.91728 0.91130 0.91564 0.94141 0.82753 0.85632 0.80934 0.82363 0.92176 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.48 11.00 55.43 0.61 -22.87 16 2 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 3 Si 0.90 20.24 29.54 -169.99 -5.02 15.21 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.04 8.15 -34.44 -0.28 -14.33 16 8 H 0.06 1.62 7.78 -52.49 -0.41 1.21 16 9 C 0.26 6.47 0.95 -89.92 -0.09 6.39 16 10 O -0.58 -15.54 13.09 -35.23 -0.46 -16.00 16 11 C -0.13 -2.90 5.26 -25.38 -0.13 -3.03 16 12 C 0.05 0.94 6.32 -2.75 -0.02 0.92 16 13 N -0.48 -10.47 5.36 -168.77 -0.91 -11.37 16 14 C 0.38 7.56 5.89 -154.92 -0.91 6.65 16 15 N -0.49 -9.44 10.38 -12.52 -0.13 -9.57 16 16 C 0.11 1.66 11.08 -17.91 -0.20 1.46 16 17 C -0.20 -2.62 10.08 -39.68 -0.40 -3.02 16 18 C 0.13 1.89 7.34 -84.08 -0.62 1.27 16 19 N -0.59 -6.56 6.05 -10.59 -0.06 -6.63 16 20 H 0.41 2.99 8.96 -40.82 -0.37 2.63 16 21 C 0.03 0.39 11.83 -16.61 -0.20 0.20 16 22 C -0.17 -2.66 8.22 -37.75 -0.31 -2.97 16 23 C -0.19 -3.36 5.01 -105.02 -0.53 -3.89 16 24 C 0.06 1.41 5.50 -1.74 -0.01 1.40 16 25 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.38 10.08 7.46 45.56 0.34 10.42 16 27 H 0.06 1.49 7.84 -51.93 -0.41 1.09 16 28 H 0.07 1.70 7.98 -51.93 -0.41 1.29 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.04 0.78 5.89 -51.93 -0.31 0.48 16 31 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.16 2.66 7.36 -52.49 -0.39 2.28 16 35 H 0.06 1.31 5.19 -51.93 -0.27 1.04 16 36 H 0.07 1.76 8.14 -51.92 -0.42 1.34 16 LS Contribution 294.89 15.07 4.44 4.44 Total: -1.00 -30.80 294.89 -8.78 -39.57 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -3.47 Total: 14.40 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -3.78 Total: -7.19 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.49 Total: -50.44 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.46 Total: -16.00 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.80 -8.78 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596287454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.895 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds