Wall clock time and date at job start Mon Mar 30 2020 00:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00220 * 2 1 4 4 H 1.48499 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47536 * 300.00309 * 3 2 1 6 6 H 1.48506 * 109.46871 * 59.99993 * 3 2 1 7 7 C 1.37881 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00090 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.64481 * 298.30591 * 9 7 2 11 11 C 1.54594 * 110.72534 * 61.45757 * 9 7 2 12 12 C 1.53991 * 105.14285 * 140.49051 * 11 9 7 13 13 N 1.47905 * 107.22505 * 1.12969 * 12 11 9 14 14 C 1.38793 * 110.99953 * 214.25495 * 13 12 11 15 15 N 1.32319 * 120.08158 * 239.59787 * 14 13 12 16 16 C 1.32403 * 122.10291 * 179.66378 * 15 14 13 17 17 C 1.36552 * 121.74918 * 0.64189 * 16 15 14 18 18 C 1.39600 * 119.14006 * 359.68085 * 17 16 15 19 19 N 1.37028 * 134.56629 * 180.02562 * 18 17 16 20 20 H 0.97000 * 125.05514 * 359.97438 * 19 18 17 21 21 C 1.37048 * 109.89602 * 179.97438 * 19 18 17 22 22 C 1.34309 * 109.85112 * 359.97438 * 21 19 18 23 23 C 1.40133 * 120.08260 * 59.86982 * 14 13 12 24 24 C 1.48813 * 105.67450 * 334.90354 * 13 12 11 25 25 H 0.96998 * 119.99949 * 0.02562 * 1 2 3 26 26 H 0.96698 * 113.99619 * 61.69886 * 10 9 7 27 27 H 1.09005 * 110.30718 * 21.57856 * 11 9 7 28 28 H 1.09001 * 110.39460 * 259.45236 * 11 9 7 29 29 H 1.09002 * 109.91707 * 120.58029 * 12 11 9 30 30 H 1.09002 * 109.91668 * 241.67819 * 12 11 9 31 31 H 1.08007 * 119.12270 * 180.29448 * 16 15 14 32 32 H 1.08000 * 120.42873 * 179.70146 * 17 16 15 33 33 H 1.08002 * 125.07720 * 180.02562 * 21 19 18 34 34 H 1.08002 * 126.52998 * 180.02562 * 22 21 19 35 35 H 1.08998 * 110.51915 * 280.54171 * 24 13 12 36 36 H 1.09009 * 110.83927 * 157.56590 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.4503 -2.6187 1.1771 11 6 0.3786 -2.6272 -1.2704 12 6 0.5026 -4.1018 -1.6966 13 7 1.3723 -4.7724 -0.7059 14 6 2.1454 -5.7556 -1.3076 15 7 2.0461 -7.0135 -0.9095 16 6 2.7593 -7.9840 -1.4596 17 6 3.6510 -7.7395 -2.4644 18 6 3.8104 -6.4327 -2.9287 19 7 4.5877 -5.8420 -3.8903 20 1 5.2203 -6.3079 -4.4591 21 6 4.3384 -4.4949 -3.9288 22 6 3.4098 -4.1765 -3.0122 23 6 3.0373 -5.4176 -2.3343 24 6 2.2238 -3.6984 -0.1262 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2278 -1.9347 1.2627 27 1 0.7564 -1.9732 -2.0564 28 1 -0.6597 -2.3849 -1.0440 29 1 -0.4816 -4.5702 -1.7040 30 1 0.9514 -4.1653 -2.6879 31 1 2.6364 -8.9951 -1.1002 32 1 4.2252 -8.5468 -2.8945 33 1 4.8165 -3.7941 -4.5972 34 1 3.0138 -3.1915 -2.8135 35 1 3.0463 -3.4576 -0.7996 36 1 2.6031 -3.9905 0.8532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596287454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:33 Heat of formation + Delta-G solvation = 18.877685 kcal Electronic energy + Delta-G solvation = -21314.817817 eV Core-core repulsion = 18184.933781 eV Total energy + Delta-G solvation = -3129.884036 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.67086 -40.24060 -38.80786 -36.57072 -34.14509 -32.91402 -31.52827 -31.15697 -29.87716 -29.06865 -26.60592 -24.23951 -23.40271 -22.19239 -21.76344 -21.37326 -19.31741 -18.93394 -17.69416 -17.00770 -16.75021 -16.63481 -15.99087 -15.78286 -15.70691 -15.34979 -14.83870 -14.42560 -14.15252 -13.96702 -13.72594 -13.50994 -13.25124 -13.17203 -12.89002 -12.63157 -12.51440 -12.28647 -12.18009 -11.80544 -11.13622 -10.69430 -10.68201 -10.56382 -10.08675 -9.76777 -9.32244 -8.78365 -8.17806 -6.34001 -0.09623 0.59252 1.42706 1.46470 1.56928 1.68858 2.12198 2.40866 2.72639 2.86884 3.07669 3.70405 3.80419 3.93644 4.10020 4.13329 4.18194 4.27140 4.35940 4.45988 4.59794 4.65320 4.69096 4.80834 4.92036 5.04162 5.11207 5.20714 5.45759 5.50601 5.56628 5.58348 5.70237 5.83310 5.86413 6.20150 6.37236 6.65126 6.71507 7.32853 7.37904 7.50899 8.88375 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025150 B = 0.005960 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.044432 B = 4696.584697 C = 5401.300186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.032 3.968 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.556 4.556 8 H 0.056 0.944 9 C 0.245 3.755 10 O -0.593 6.593 11 C -0.111 4.111 12 C 0.057 3.943 13 N -0.492 5.492 14 C 0.331 3.669 15 N -0.526 5.526 16 C 0.092 3.908 17 C -0.174 4.174 18 C 0.120 3.880 19 N -0.570 5.570 20 H 0.438 0.562 21 C 0.078 3.922 22 C -0.223 4.223 23 C -0.209 4.209 24 C 0.075 3.925 25 H 0.269 0.731 26 H 0.373 0.627 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.188 0.812 32 H 0.173 0.827 33 H 0.219 0.781 34 H 0.136 0.864 35 H 0.067 0.933 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.858 -10.757 -11.930 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.168 4.168 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.594 4.594 8 H 0.074 0.926 9 C 0.205 3.795 10 O -0.400 6.400 11 C -0.150 4.150 12 C -0.070 4.070 13 N -0.214 5.214 14 C 0.094 3.906 15 N -0.238 5.238 16 C -0.059 4.059 17 C -0.197 4.197 18 C 0.003 3.997 19 N -0.175 5.175 20 H 0.279 0.721 21 C -0.048 4.048 22 C -0.249 4.249 23 C -0.219 4.219 24 C -0.052 4.052 25 H 0.079 0.921 26 H 0.222 0.778 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.205 0.795 32 H 0.191 0.809 33 H 0.236 0.764 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.321 -11.763 -10.866 18.529 hybrid contribution 0.846 1.895 -1.143 2.369 sum 10.167 -9.868 -12.008 18.572 Atomic orbital electron populations 1.69833 1.06911 1.28144 1.50110 1.25677 0.95764 1.02182 0.93218 0.85463 0.78945 0.79208 0.77700 1.19420 1.20068 1.20827 1.21768 0.93458 0.91586 1.52621 0.92577 1.19547 0.87096 0.90780 0.82072 1.86164 1.51682 1.56050 1.46153 1.22681 1.00478 0.92396 0.99412 1.22856 0.96370 0.94734 0.93028 1.61463 1.19177 1.10327 1.30462 1.19652 0.90856 0.90487 0.89570 1.67317 1.26381 1.00039 1.30044 1.22558 0.91784 0.98438 0.93088 1.21113 1.03599 0.93927 1.01016 1.18504 0.94295 0.94231 0.92620 1.41678 1.36641 1.07201 1.31977 0.72102 1.22508 0.98045 0.84295 0.99966 1.21885 1.04530 0.96768 1.01669 1.20898 1.02740 0.96491 1.01789 1.23183 0.94781 0.89314 0.97891 0.92139 0.77830 0.92420 0.92955 0.91606 0.92797 0.79509 0.80941 0.76419 0.84579 0.91453 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.91 11.00 21.45 0.24 -48.68 16 2 C 0.03 1.71 5.28 84.66 0.45 2.15 16 3 Si 0.96 41.75 29.54 68.60 2.03 43.78 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.56 -30.09 8.15 25.60 0.21 -29.88 16 8 H 0.06 3.02 7.78 -2.91 -0.02 3.00 16 9 C 0.25 12.81 0.95 -10.34 -0.01 12.80 16 10 O -0.59 -33.47 13.09 -148.98 -1.95 -35.42 16 11 C -0.11 -5.33 5.26 31.47 0.17 -5.17 16 12 C 0.06 2.46 6.32 86.44 0.55 3.00 16 13 N -0.49 -22.50 5.36 -687.86 -3.69 -26.19 16 14 C 0.33 13.50 5.89 133.40 0.79 14.28 16 15 N -0.53 -20.20 10.38 -193.52 -2.01 -22.21 16 16 C 0.09 2.50 11.08 84.21 0.93 3.44 16 17 C -0.17 -3.85 10.08 22.20 0.22 -3.63 16 18 C 0.12 3.11 7.34 39.28 0.29 3.40 16 19 N -0.57 -10.07 6.05 -187.43 -1.13 -11.21 16 20 H 0.44 3.82 8.96 -92.71 -0.83 2.99 16 21 C 0.08 1.56 11.83 82.98 0.98 2.54 16 22 C -0.22 -6.84 8.22 23.45 0.19 -6.64 16 23 C -0.21 -7.19 5.01 -20.12 -0.10 -7.29 16 24 C 0.07 3.60 5.50 86.59 0.48 4.08 16 25 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 26 H 0.37 20.99 7.46 -74.06 -0.55 20.44 16 27 H 0.06 2.79 7.84 -2.38 -0.02 2.77 16 28 H 0.05 2.65 7.98 -2.39 -0.02 2.63 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.05 2.16 5.89 -2.39 -0.01 2.15 16 31 H 0.19 3.60 8.06 -2.91 -0.02 3.57 16 32 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.22 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.14 4.73 7.36 -2.91 -0.02 4.70 16 35 H 0.07 3.10 5.19 -2.39 -0.01 3.08 16 36 H 0.05 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -70.31 294.89 -1.63 -71.94 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -0.25 Total: 34.90 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.14 Total: -6.92 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -6.60 Total: -108.29 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.95 Total: -35.42 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -70.31 -1.63 -71.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596287454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.822 kcal (2) G-P(sol) polarization free energy of solvation -70.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds