Wall clock time and date at job start Mon Mar 30 2020 01:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37819 * 119.99552 * 2 1 4 4 C 1.40198 * 118.74651 * 180.02562 * 3 2 1 5 5 O 1.22093 * 120.59027 * 180.02562 * 4 3 2 6 6 N 1.34925 * 118.81825 * 359.97438 * 4 3 2 7 7 C 1.38343 * 131.91931 * 180.02562 * 6 4 3 8 8 C 1.33013 * 108.24313 * 179.97438 * 7 6 4 9 9 N 1.38048 * 108.31982 * 0.02562 * 8 7 6 10 10 C 1.46499 * 126.02658 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47262 * 84.62110 * 10 9 8 12 12 C 1.50699 * 115.55082 * 39.66725 * 11 10 9 13 13 H 1.08003 * 119.99960 * 264.84001 * 12 11 10 14 14 C 1.37876 * 119.99795 * 84.83574 * 12 11 10 15 15 N 1.31510 * 120.00222 * 353.92243 * 14 12 11 16 16 Si 1.86808 * 119.99445 * 173.91965 * 14 12 11 17 17 H 1.48493 * 109.47272 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46721 * 120.00311 * 16 14 12 19 19 H 1.48497 * 109.46952 * 240.00060 * 16 14 12 20 20 C 1.53004 * 117.49636 * 253.95813 * 11 10 9 21 21 C 1.53000 * 117.49614 * 185.33557 * 11 10 9 22 22 C 1.35967 * 120.07610 * 0.29142 * 6 4 3 23 23 N 1.32421 * 120.95814 * 359.39861 * 22 6 4 24 24 H 1.08997 * 109.47343 * 90.00749 * 1 2 3 25 25 H 1.09005 * 109.46789 * 210.00247 * 1 2 3 26 26 H 1.08999 * 109.47333 * 329.99881 * 1 2 3 27 27 H 1.08001 * 120.63049 * 359.97438 * 3 2 1 28 28 H 1.08007 * 125.87697 * 359.96007 * 7 6 4 29 29 H 1.07994 * 125.83643 * 180.02562 * 8 7 6 30 30 H 1.08999 * 109.47344 * 204.62058 * 10 9 8 31 31 H 1.08998 * 109.47264 * 324.62180 * 10 9 8 32 32 H 0.96999 * 119.99539 * 185.00065 * 15 14 12 33 33 H 1.08999 * 117.50216 * 0.02562 * 20 11 10 34 34 H 1.09002 * 117.49679 * 145.02437 * 20 11 10 35 35 H 1.08999 * 117.49672 * 214.97734 * 21 11 10 36 36 H 1.09002 * 117.50242 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1936 0.0000 4 6 3.5976 1.1630 -0.0005 5 8 4.2417 2.2003 -0.0001 6 7 4.2221 -0.0330 -0.0005 7 6 5.5624 -0.3759 -0.0005 8 6 5.6527 -1.7029 0.0001 9 7 4.3746 -2.2248 -0.0001 10 6 4.0249 -3.6474 0.0009 11 6 4.0337 -4.1738 1.4375 12 6 3.4655 -3.2404 2.4752 13 1 4.1227 -2.5933 3.0372 14 6 2.1067 -3.2125 2.7072 15 7 1.2947 -3.9102 1.9434 16 14 1.4191 -2.1835 4.1065 17 1 2.5325 -1.4980 4.8104 18 1 0.4805 -1.1703 3.5610 19 1 0.6975 -3.0640 5.0601 20 6 5.2031 -5.0677 1.8551 21 6 3.8148 -5.6743 1.6414 22 6 3.4945 -1.1816 -0.0060 23 7 2.1707 -1.1494 0.0006 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6662 2.1348 -0.0004 28 1 6.3925 0.3151 -0.0011 29 1 6.5691 -2.2743 0.0006 30 1 3.0311 -3.7776 -0.4277 31 1 4.7520 -4.2008 -0.5933 32 1 0.3347 -3.8344 2.0597 33 1 5.9664 -5.2804 1.1066 34 1 5.5618 -4.9807 2.8808 35 1 3.2602 -5.9863 2.5263 36 1 3.6649 -6.2866 0.7521 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596297935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:33 Heat of formation + Delta-G solvation = 88.819493 kcal Electronic energy + Delta-G solvation = -21677.195639 eV Core-core repulsion = 18550.344508 eV Total energy + Delta-G solvation = -3126.851131 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.66213 -38.71358 -36.81015 -36.75632 -33.71223 -32.01458 -31.31764 -29.49267 -27.61772 -26.66929 -25.46945 -23.00426 -21.77223 -21.30797 -21.15631 -19.39397 -17.96129 -17.20943 -16.40039 -16.23547 -15.51667 -14.81851 -14.58880 -14.27063 -14.14817 -13.74223 -13.30149 -13.20729 -12.94724 -12.84060 -12.50274 -11.97251 -11.87313 -11.84470 -11.04521 -10.99999 -10.95119 -10.66845 -10.39867 -10.29263 -9.67826 -9.50578 -9.11327 -9.04432 -8.57427 -8.50344 -8.32474 -6.95605 -6.10624 -4.17002 1.46067 1.99159 2.48632 2.89911 3.24450 3.32461 3.33984 3.38238 4.33392 4.36764 4.66166 4.86785 5.05448 5.19902 5.30414 5.33599 5.46048 5.64603 5.81091 5.90691 5.93916 6.00060 6.05313 6.11336 6.23769 6.29155 6.42129 6.50830 6.60402 6.77345 6.84592 7.04483 7.14071 7.25436 7.34999 7.51517 7.81161 8.25250 8.46276 8.63367 8.81047 9.51700 10.97574 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.009828 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.415660 B = 2848.333272 C = 3818.954783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.242 3.758 3 C -0.392 4.392 4 C 0.533 3.467 5 O -0.570 6.570 6 N -0.460 5.460 7 C -0.041 4.041 8 C 0.047 3.953 9 N -0.433 5.433 10 C 0.157 3.843 11 C 0.026 3.974 12 C -0.506 4.506 13 H 0.052 0.948 14 C 0.099 3.901 15 N -0.854 5.854 16 Si 0.872 3.128 17 H -0.277 1.277 18 H -0.279 1.279 19 H -0.283 1.283 20 C -0.212 4.212 21 C -0.145 4.145 22 C 0.569 3.431 23 N -0.533 5.533 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.144 0.856 28 H 0.186 0.814 29 H 0.195 0.805 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.261 0.739 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 0.065 -5.704 6.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.106 3.894 3 C -0.421 4.421 4 C 0.341 3.659 5 O -0.452 6.452 6 N -0.169 5.169 7 C -0.165 4.165 8 C -0.079 4.079 9 N -0.121 5.121 10 C 0.037 3.963 11 C 0.025 3.975 12 C -0.543 4.543 13 H 0.070 0.930 14 C -0.108 4.108 15 N -0.488 5.488 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.204 1.204 19 H -0.209 1.209 20 C -0.249 4.249 21 C -0.184 4.184 22 C 0.220 3.780 23 N -0.265 5.265 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.161 0.839 28 H 0.203 0.797 29 H 0.212 0.788 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.192 -0.234 -5.696 6.533 hybrid contribution 0.078 1.221 1.006 1.584 sum 3.270 0.987 -4.690 5.802 Atomic orbital electron populations 1.20693 0.88529 1.03734 1.02917 1.21089 0.96512 0.86882 0.84870 1.22065 0.91248 0.99962 1.28792 1.16876 0.89139 0.80571 0.79268 1.90864 1.68200 1.30499 1.55657 1.45145 1.07974 1.09426 1.54366 1.21833 0.86391 0.95137 1.13096 1.22080 0.88994 0.92444 1.04411 1.44180 1.02714 1.06679 1.58569 1.21727 1.01681 0.73184 0.99680 1.19131 0.96256 0.90569 0.91509 1.20098 0.91882 1.22629 1.19661 0.93014 1.24693 0.96830 0.94102 0.95181 1.69883 1.03089 1.38766 1.37081 0.86846 0.79512 0.80616 0.83072 1.20136 1.20428 1.20908 1.23126 0.91518 1.09458 1.00788 1.22510 0.96966 0.97458 1.01420 1.19752 0.87138 0.79594 0.91560 1.67708 0.99862 1.27905 1.31049 0.90119 0.89802 0.90710 0.83854 0.79673 0.78810 0.87747 0.91464 0.92884 0.91636 0.90270 0.89627 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 10.19 36.01 0.37 -1.21 16 2 C 0.24 4.75 6.80 -82.36 -0.56 4.19 16 3 C -0.39 -7.85 9.74 -39.00 -0.38 -8.23 16 4 C 0.53 11.69 7.60 -15.46 -0.12 11.57 16 5 O -0.57 -13.62 17.73 4.83 0.09 -13.53 16 6 N -0.46 -9.32 2.90 -66.85 -0.19 -9.51 16 7 C -0.04 -0.67 11.46 -16.42 -0.19 -0.86 16 8 C 0.05 0.69 11.45 -16.56 -0.19 0.50 16 9 N -0.43 -7.97 2.29 -118.05 -0.27 -8.24 16 10 C 0.16 2.90 6.23 -4.04 -0.03 2.88 16 11 C 0.03 0.55 1.76 -155.66 -0.27 0.28 16 12 C -0.51 -12.54 7.72 -34.44 -0.27 -12.81 16 13 H 0.05 1.38 7.82 -52.48 -0.41 0.97 16 14 C 0.10 2.51 5.39 -17.82 -0.10 2.42 16 15 N -0.85 -21.83 12.93 55.43 0.72 -21.11 16 16 Si 0.87 20.99 29.55 -169.99 -5.02 15.97 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.21 -3.88 9.88 -26.73 -0.26 -4.14 16 21 C -0.15 -2.92 9.47 -26.73 -0.25 -3.18 16 22 C 0.57 11.83 7.94 -320.99 -2.55 9.28 16 23 N -0.53 -11.53 10.37 -9.94 -0.10 -11.63 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 27 H 0.14 2.57 8.06 -52.49 -0.42 2.15 16 28 H 0.19 2.47 8.06 -52.48 -0.42 2.05 16 29 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.10 2.16 8.13 -51.93 -0.42 1.73 16 31 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 32 H 0.26 6.56 8.32 -40.82 -0.34 6.22 16 33 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -30.91 315.96 -9.42 -40.33 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.60 Total: 2.27 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -4.79 Total: 0.70 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.15 Total: -50.49 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.91 -9.42 -40.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596297935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.147 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds