Wall clock time and date at job start Mon Mar 30 2020 01:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37819 * 119.99552 * 2 1 4 4 C 1.40198 * 118.74651 * 180.02562 * 3 2 1 5 5 O 1.22093 * 120.59027 * 180.02562 * 4 3 2 6 6 N 1.34925 * 118.81825 * 359.97438 * 4 3 2 7 7 C 1.38343 * 131.91931 * 180.02562 * 6 4 3 8 8 C 1.33013 * 108.24313 * 179.97438 * 7 6 4 9 9 N 1.38048 * 108.31982 * 0.02562 * 8 7 6 10 10 C 1.46499 * 126.02658 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47262 * 84.62110 * 10 9 8 12 12 C 1.50699 * 115.55082 * 39.66725 * 11 10 9 13 13 H 1.08003 * 119.99960 * 264.84001 * 12 11 10 14 14 C 1.37876 * 119.99795 * 84.83574 * 12 11 10 15 15 N 1.31510 * 120.00222 * 353.92243 * 14 12 11 16 16 Si 1.86808 * 119.99445 * 173.91965 * 14 12 11 17 17 H 1.48493 * 109.47272 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46721 * 120.00311 * 16 14 12 19 19 H 1.48497 * 109.46952 * 240.00060 * 16 14 12 20 20 C 1.53004 * 117.49636 * 253.95813 * 11 10 9 21 21 C 1.53000 * 117.49614 * 185.33557 * 11 10 9 22 22 C 1.35967 * 120.07610 * 0.29142 * 6 4 3 23 23 N 1.32421 * 120.95814 * 359.39861 * 22 6 4 24 24 H 1.08997 * 109.47343 * 90.00749 * 1 2 3 25 25 H 1.09005 * 109.46789 * 210.00247 * 1 2 3 26 26 H 1.08999 * 109.47333 * 329.99881 * 1 2 3 27 27 H 1.08001 * 120.63049 * 359.97438 * 3 2 1 28 28 H 1.08007 * 125.87697 * 359.96007 * 7 6 4 29 29 H 1.07994 * 125.83643 * 180.02562 * 8 7 6 30 30 H 1.08999 * 109.47344 * 204.62058 * 10 9 8 31 31 H 1.08998 * 109.47264 * 324.62180 * 10 9 8 32 32 H 0.96999 * 119.99539 * 185.00065 * 15 14 12 33 33 H 1.08999 * 117.50216 * 0.02562 * 20 11 10 34 34 H 1.09002 * 117.49679 * 145.02437 * 20 11 10 35 35 H 1.08999 * 117.49672 * 214.97734 * 21 11 10 36 36 H 1.09002 * 117.50242 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1936 0.0000 4 6 3.5976 1.1630 -0.0005 5 8 4.2417 2.2003 -0.0001 6 7 4.2221 -0.0330 -0.0005 7 6 5.5624 -0.3759 -0.0005 8 6 5.6527 -1.7029 0.0001 9 7 4.3746 -2.2248 -0.0001 10 6 4.0249 -3.6474 0.0009 11 6 4.0337 -4.1738 1.4375 12 6 3.4655 -3.2404 2.4752 13 1 4.1227 -2.5933 3.0372 14 6 2.1067 -3.2125 2.7072 15 7 1.2947 -3.9102 1.9434 16 14 1.4191 -2.1835 4.1065 17 1 2.5325 -1.4980 4.8104 18 1 0.4805 -1.1703 3.5610 19 1 0.6975 -3.0640 5.0601 20 6 5.2031 -5.0677 1.8551 21 6 3.8148 -5.6743 1.6414 22 6 3.4945 -1.1816 -0.0060 23 7 2.1707 -1.1494 0.0006 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6662 2.1348 -0.0004 28 1 6.3925 0.3151 -0.0011 29 1 6.5691 -2.2743 0.0006 30 1 3.0311 -3.7776 -0.4277 31 1 4.7520 -4.2008 -0.5933 32 1 0.3347 -3.8344 2.0597 33 1 5.9664 -5.2804 1.1066 34 1 5.5618 -4.9807 2.8808 35 1 3.2602 -5.9863 2.5263 36 1 3.6649 -6.2866 0.7521 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596297935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:33 Heat of formation + Delta-G solvation = 73.985183 kcal Electronic energy + Delta-G solvation = -21677.838903 eV Core-core repulsion = 18550.344508 eV Total energy + Delta-G solvation = -3127.494395 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.11232 -40.24168 -38.40536 -38.29643 -35.21960 -33.92041 -32.68999 -30.99482 -28.98940 -28.13401 -27.32896 -24.48011 -23.20824 -22.82453 -22.56661 -21.06101 -19.49116 -18.68921 -18.09855 -17.74783 -17.09029 -16.62337 -16.15851 -15.77679 -15.66301 -15.24842 -14.73048 -14.55313 -14.44488 -14.24282 -13.98558 -13.62012 -13.44458 -13.19580 -12.95018 -12.84195 -12.51561 -12.36314 -12.00686 -11.91309 -11.33369 -11.10001 -10.82570 -10.63640 -10.35303 -9.95890 -9.93303 -8.47224 -8.06502 -6.11784 -0.05159 0.58406 1.04169 1.27260 1.35294 1.38792 1.47841 1.97411 2.41155 2.78834 3.24513 3.27316 3.47249 3.55614 3.95884 3.99785 4.24376 4.33147 4.41914 4.56462 4.61285 4.63814 4.69142 4.76672 4.78589 4.91914 4.97857 5.08867 5.13656 5.32246 5.37659 5.55045 5.65805 5.73338 5.81351 5.95998 6.01857 6.43045 6.86227 6.87580 7.11809 7.56496 9.00467 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.009828 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.415660 B = 2848.333272 C = 3818.954783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.234 3.766 3 C -0.404 4.404 4 C 0.516 3.484 5 O -0.604 6.604 6 N -0.466 5.466 7 C -0.066 4.066 8 C 0.071 3.929 9 N -0.435 5.435 10 C 0.167 3.833 11 C 0.000 4.000 12 C -0.505 4.505 13 H 0.024 0.976 14 C 0.076 3.924 15 N -0.864 5.864 16 Si 0.892 3.108 17 H -0.291 1.291 18 H -0.282 1.282 19 H -0.279 1.279 20 C -0.180 4.180 21 C -0.152 4.152 22 C 0.542 3.458 23 N -0.558 5.558 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.158 0.842 28 H 0.210 0.790 29 H 0.250 0.750 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.258 0.742 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 -1.183 -6.786 8.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 C -0.432 4.432 4 C 0.326 3.674 5 O -0.491 6.491 6 N -0.174 5.174 7 C -0.187 4.187 8 C -0.054 4.054 9 N -0.123 5.123 10 C 0.047 3.953 11 C -0.001 4.001 12 C -0.542 4.542 13 H 0.042 0.958 14 C -0.129 4.129 15 N -0.499 5.499 16 Si 0.721 3.279 17 H -0.217 1.217 18 H -0.208 1.208 19 H -0.205 1.205 20 C -0.217 4.217 21 C -0.190 4.190 22 C 0.193 3.807 23 N -0.290 5.290 24 H 0.126 0.874 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.175 0.825 28 H 0.226 0.774 29 H 0.266 0.734 30 H 0.096 0.904 31 H 0.136 0.864 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.816 -1.516 -6.770 8.445 hybrid contribution -0.374 1.548 1.389 2.113 sum 4.442 0.033 -5.381 6.978 Atomic orbital electron populations 1.20790 0.85969 1.03883 1.04725 1.21645 0.98228 0.86307 0.84035 1.22253 0.90948 1.00872 1.29131 1.17177 0.89876 0.80737 0.79627 1.90821 1.68936 1.31489 1.57839 1.45127 1.09606 1.08811 1.53855 1.22504 0.85448 0.96585 1.14171 1.23015 0.89054 0.92081 1.01203 1.44414 1.03625 1.06331 1.57920 1.21627 1.02082 0.73346 0.98259 1.19137 0.98710 0.90238 0.91971 1.20149 0.91360 1.22541 1.20196 0.95763 1.24921 0.97401 0.94722 0.95837 1.69898 1.02814 1.39571 1.37641 0.86565 0.78723 0.80130 0.82525 1.21689 1.20750 1.20454 1.23144 0.91248 1.05904 1.01427 1.22438 0.98438 0.97052 1.01083 1.20080 0.87463 0.80553 0.92629 1.67721 1.00862 1.28961 1.31433 0.87374 0.91454 0.88583 0.82462 0.77356 0.73350 0.90435 0.86446 0.93229 0.87160 0.91380 0.92773 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.94 10.19 71.24 0.73 -2.21 16 2 C 0.23 9.22 6.80 42.32 0.29 9.51 16 3 C -0.40 -16.31 9.74 22.65 0.22 -16.09 16 4 C 0.52 22.90 7.60 84.69 0.64 23.54 16 5 O -0.60 -29.41 17.73 -5.62 -0.10 -29.51 16 6 N -0.47 -18.67 2.90 -483.39 -1.40 -20.07 16 7 C -0.07 -1.99 11.46 82.50 0.95 -1.05 16 8 C 0.07 1.81 11.45 82.55 0.94 2.76 16 9 N -0.43 -14.90 2.29 -527.41 -1.21 -16.11 16 10 C 0.17 5.62 6.23 86.38 0.54 6.15 16 11 C 0.00 0.02 1.76 -52.92 -0.09 -0.07 16 12 C -0.50 -24.82 7.72 25.60 0.20 -24.63 16 13 H 0.02 1.30 7.82 -2.91 -0.02 1.28 16 14 C 0.08 3.89 5.39 84.65 0.46 4.35 16 15 N -0.86 -44.33 12.93 21.45 0.28 -44.05 16 16 Si 0.89 43.28 29.55 68.60 2.03 45.30 16 17 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 18 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 C -0.18 -5.85 9.88 30.60 0.30 -5.55 16 21 C -0.15 -5.74 9.47 30.60 0.29 -5.45 16 22 C 0.54 22.19 7.94 260.85 2.07 24.26 16 23 N -0.56 -24.15 10.37 -185.36 -1.92 -26.08 16 24 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 25 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.10 2.47 8.08 -2.39 -0.02 2.45 16 27 H 0.16 5.66 8.06 -2.91 -0.02 5.64 16 28 H 0.21 5.11 8.06 -2.91 -0.02 5.08 16 29 H 0.25 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.08 3.06 8.13 -2.39 -0.02 3.05 16 31 H 0.12 2.80 7.94 -2.39 -0.02 2.78 16 32 H 0.26 13.10 8.32 -92.71 -0.77 12.33 16 33 H 0.11 2.64 8.08 -2.39 -0.02 2.62 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -69.73 315.96 6.29 -63.45 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.08 Total: 11.54 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 7.53 Total: 15.52 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -4.25 Total: -106.30 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.10 Total: -29.51 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -69.73 6.29 -63.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596297935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.432 kcal (2) G-P(sol) polarization free energy of solvation -69.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds