Wall clock time and date at job start Mon Mar 30 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47009 * 2 1 4 4 C 1.38666 * 120.42011 * 90.00205 * 3 2 1 5 5 C 1.38624 * 118.42259 * 180.02562 * 4 3 2 6 6 C 1.38228 * 119.15823 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.61880 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47204 * 124.99933 * 7 6 5 9 9 O 1.21292 * 119.99869 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00529 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00668 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99324 * 18.11952 * 11 10 8 13 13 C 1.38947 * 120.00272 * 198.11329 * 11 10 8 14 14 N 1.31411 * 119.99989 * 18.72973 * 13 11 10 15 15 Si 1.86800 * 119.99874 * 198.73035 * 13 11 10 16 16 H 1.48499 * 109.47035 * 85.59274 * 15 13 11 17 17 H 1.48498 * 109.46826 * 205.58741 * 15 13 11 18 18 H 1.48491 * 109.47414 * 325.59027 * 15 13 11 19 19 C 1.46500 * 119.99230 * 0.02562 * 10 8 7 20 20 C 1.47196 * 109.47698 * 84.20904 * 19 10 8 21 21 N 9.24584 * 116.38834 * 13.07309 * 2 1 3 22 22 N 1.31855 * 120.76431 * 0.02562 * 6 5 4 23 23 C 1.31883 * 121.72837 * 359.70187 * 22 6 5 24 24 H 1.08991 * 109.47266 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47678 * 300.00507 * 1 2 3 26 26 H 1.09007 * 109.47169 * 60.00124 * 1 2 3 27 27 H 1.08999 * 109.47277 * 239.99800 * 2 1 3 28 28 H 1.09000 * 109.46834 * 119.99690 * 2 1 3 29 29 H 1.08003 * 120.79057 * 0.02562 * 4 3 2 30 30 H 1.08001 * 120.42744 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47263 * 244.99980 * 7 6 5 32 32 H 1.09002 * 109.47116 * 4.99939 * 7 6 5 33 33 H 0.96999 * 119.99729 * 179.97438 * 14 13 11 34 34 H 1.09005 * 109.46872 * 204.20652 * 19 10 8 35 35 H 1.09001 * 109.47780 * 324.20143 * 19 10 8 36 36 H 1.07997 * 119.62160 * 180.31499 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7276 3.3892 1.1474 6 6 2.9379 3.9841 -0.0824 7 6 3.4398 5.4037 -0.1470 8 6 4.6927 5.4560 -0.9828 9 8 5.1344 4.4405 -1.4777 10 7 5.3225 6.6311 -1.1804 11 6 6.4626 6.6786 -1.9402 12 1 6.6982 5.8661 -2.6116 13 6 7.3148 7.7720 -1.8466 14 7 7.2496 8.5685 -0.8035 15 14 8.5533 8.1097 -3.2037 16 1 7.9054 8.9028 -4.2790 17 1 9.7001 8.8725 -2.6485 18 1 9.0390 6.8224 -3.7622 19 6 4.7892 7.8574 -0.5821 20 6 5.2688 7.9758 0.8045 21 7 5.6393 8.0678 1.8734 22 7 2.7045 3.3240 -1.1997 23 6 2.2705 2.0786 -1.1917 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0934 1.5923 2.1423 30 1 2.9203 3.9353 2.0591 31 1 2.6764 6.0388 -0.5965 32 1 3.6599 5.7574 0.8602 33 1 7.8448 9.3316 -0.7380 34 1 5.1267 8.7191 -1.1581 35 1 3.6998 7.8207 -0.5879 36 1 2.0953 1.5684 -2.1273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597034902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:32 Heat of formation + Delta-G solvation = 31.378592 kcal Electronic energy + Delta-G solvation = -20181.243623 eV Core-core repulsion = 17051.901667 eV Total energy + Delta-G solvation = -3129.341956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18780 -38.60587 -35.80021 -34.85724 -34.22389 -32.16114 -31.76877 -30.96600 -27.82195 -27.23784 -24.75468 -23.63773 -23.07947 -21.05756 -19.21394 -17.87507 -16.76054 -16.30178 -16.11479 -15.89595 -15.18384 -14.69028 -14.13985 -14.06415 -13.94723 -13.58024 -13.33329 -12.95925 -12.80801 -12.63437 -12.33699 -12.05657 -11.97133 -11.62462 -11.44144 -11.35821 -11.21751 -11.09218 -11.02301 -10.53073 -10.37684 -10.26062 -9.53242 -9.21046 -9.03268 -8.68894 -8.37600 -7.98210 -6.44772 -3.95544 1.33135 1.56286 3.14629 3.25091 3.29018 3.60366 3.83570 3.99641 4.02722 4.17572 4.53674 4.75723 4.80496 4.85474 4.95484 5.08330 5.09750 5.23473 5.25496 5.35758 5.40372 5.61948 5.71976 5.73326 5.80484 5.84772 5.97291 6.01459 6.05157 6.20874 6.36591 6.43941 6.58404 6.94817 7.51736 7.95600 8.34348 8.39446 8.75563 9.06704 9.24893 9.80924 10.61426 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.004376 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.276646 B = 6397.439948 C = 7086.428064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.150 4.150 4 C -0.077 4.077 5 C -0.168 4.168 6 C 0.156 3.844 7 C -0.093 4.093 8 C 0.468 3.532 9 O -0.553 6.553 10 N -0.449 5.449 11 C -0.307 4.307 12 H 0.107 0.893 13 C 0.029 3.971 14 N -0.884 5.884 15 Si 0.929 3.071 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.270 1.270 19 C 0.220 3.780 20 C 0.248 3.752 21 N -0.477 5.477 22 N -0.447 5.447 23 C 0.105 3.895 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.272 0.728 34 H 0.130 0.870 35 H 0.082 0.918 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.257 -8.275 1.400 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.152 4.152 4 C -0.103 4.103 5 C -0.188 4.188 6 C 0.018 3.982 7 C -0.134 4.134 8 C 0.255 3.745 9 O -0.434 6.434 10 N -0.170 5.170 11 C -0.434 4.434 12 H 0.125 0.875 13 C -0.173 4.173 14 N -0.524 5.524 15 Si 0.756 3.244 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.195 1.195 19 C 0.093 3.907 20 C -0.071 4.071 21 N -0.157 5.157 22 N -0.155 5.155 23 C -0.053 4.053 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.100 0.900 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.216 -8.063 1.963 14.768 hybrid contribution 0.626 -0.011 -0.018 0.626 sum -11.590 -8.074 1.945 14.258 Atomic orbital electron populations 1.21754 0.94849 1.01529 1.02214 1.20418 0.95952 0.92221 1.02908 1.20838 1.02327 0.97569 0.94483 1.21321 0.96909 0.94201 0.97861 1.21937 1.01964 0.96053 0.98882 1.20685 0.93667 0.95491 0.88327 1.20670 0.98160 0.92639 1.01921 1.19759 0.86432 0.83729 0.84561 1.90579 1.67820 1.33112 1.51845 1.43599 1.24512 1.03816 1.45123 1.19721 0.98732 1.06617 1.18318 0.87500 1.25257 0.97977 0.96992 0.97111 1.69815 1.39487 1.17306 1.25805 0.85882 0.79344 0.78716 0.80476 1.20129 1.21183 1.19484 1.18770 0.95461 0.92710 0.83789 1.29348 0.91362 0.92252 0.94096 1.80854 1.10577 1.09073 1.15167 1.67489 1.08828 1.08314 1.30848 1.22604 0.94838 0.90739 0.97102 0.92489 0.92711 0.92465 0.90833 0.91165 0.85386 0.85075 0.87992 0.88869 0.91714 0.85224 0.90004 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.80 16 2 C -0.08 -0.71 6.09 -27.88 -0.17 -0.88 16 3 C -0.15 -1.92 5.15 -104.48 -0.54 -2.46 16 4 C -0.08 -0.99 9.86 -39.28 -0.39 -1.38 16 5 C -0.17 -2.50 9.71 -39.44 -0.38 -2.89 16 6 C 0.16 2.78 5.76 -82.58 -0.48 2.30 16 7 C -0.09 -1.65 4.70 -29.04 -0.14 -1.79 16 8 C 0.47 10.83 7.50 -10.99 -0.08 10.74 16 9 O -0.55 -14.97 14.99 5.55 0.08 -14.88 16 10 N -0.45 -10.55 2.60 -117.94 -0.31 -10.86 16 11 C -0.31 -8.00 9.34 -14.94 -0.14 -8.14 16 12 H 0.11 2.97 7.37 -52.49 -0.39 2.58 16 13 C 0.03 0.73 4.94 -17.47 -0.09 0.64 16 14 N -0.88 -22.38 9.33 55.50 0.52 -21.86 16 15 Si 0.93 19.99 29.59 -169.99 -5.03 14.96 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 19 C 0.22 4.34 4.91 -6.83 -0.03 4.30 16 20 C 0.25 5.40 12.95 -20.79 -0.27 5.13 16 21 N -0.48 -11.18 18.53 42.12 0.78 -10.40 16 22 N -0.45 -8.35 9.22 -9.47 -0.09 -8.44 16 23 C 0.11 1.60 10.86 -17.55 -0.19 1.41 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.13 1.68 7.95 -52.49 -0.42 1.26 16 31 H 0.10 1.51 7.42 -51.93 -0.39 1.13 16 32 H 0.09 1.52 7.24 -51.93 -0.38 1.15 16 33 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.13 2.63 6.40 -51.93 -0.33 2.30 16 35 H 0.08 1.21 6.68 -51.93 -0.35 0.86 16 36 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -32.72 315.34 -6.15 -38.87 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.33 Total: 1.67 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -2.52 Total: 6.19 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.90 Total: -51.55 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.08 Total: -14.88 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.72 -6.15 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597034902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.249 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds