Wall clock time and date at job start Mon Mar 30 2020 01:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 115.55334 * 2 1 4 4 O 1.21282 * 119.99769 * 261.29123 * 3 2 1 5 5 N 1.34783 * 120.00205 * 81.28674 * 3 2 1 6 6 C 1.46920 * 120.62840 * 354.93537 * 5 3 2 7 7 C 1.53198 * 108.77593 * 233.58789 * 6 5 3 8 8 C 1.53045 * 109.30841 * 305.36556 * 7 6 5 9 9 C 1.53041 * 109.53783 * 61.36491 * 8 7 6 10 10 H 1.09000 * 109.49455 * 58.58303 * 9 8 7 11 11 C 1.50698 * 109.49764 * 178.64915 * 9 8 7 12 12 H 1.07999 * 120.00420 * 119.93677 * 11 9 8 13 13 C 1.37885 * 119.99912 * 299.93888 * 11 9 8 14 14 N 1.31516 * 119.99855 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99841 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47042 * 60.00017 * 15 13 11 17 17 H 1.48501 * 109.46971 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47101 * 299.99563 * 15 13 11 19 19 C 1.46926 * 120.62872 * 174.91314 * 5 3 2 20 20 C 1.53000 * 117.51386 * 214.29285 * 2 1 3 21 21 C 1.53001 * 60.00349 * 252.52218 * 20 2 1 22 22 F 1.39898 * 117.49897 * 252.51777 * 21 20 2 23 23 F 1.39899 * 117.51711 * 107.48425 * 21 20 2 24 24 H 1.08996 * 109.47169 * 55.36459 * 1 2 3 25 25 H 1.08997 * 109.47683 * 175.36824 * 1 2 3 26 26 H 1.09006 * 109.47050 * 295.36577 * 1 2 3 27 27 H 1.09000 * 109.58963 * 113.79842 * 6 5 3 28 28 H 1.09000 * 109.58932 * 353.37321 * 6 5 3 29 29 H 1.09003 * 109.49443 * 185.41723 * 7 6 5 30 30 H 1.08996 * 109.52308 * 65.33533 * 7 6 5 31 31 H 1.08996 * 109.46005 * 301.34209 * 8 7 6 32 32 H 1.08995 * 109.45897 * 181.38533 * 8 7 6 33 33 H 0.97002 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.08993 * 109.58773 * 6.62674 * 19 5 3 35 35 H 1.08999 * 109.58441 * 246.20154 * 19 5 3 36 36 H 1.08998 * 117.50266 * 0.02562 * 20 2 1 37 37 H 1.09005 * 117.49629 * 145.03018 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3595 0.0000 4 8 2.5850 1.8380 -1.0382 5 7 2.3112 2.0438 1.1538 6 6 1.7280 1.5287 2.4000 7 6 0.8407 2.6155 3.0153 8 6 1.6572 3.8985 3.1866 9 6 2.1385 4.3855 1.8179 10 1 1.2787 4.5619 1.1716 11 6 2.9142 5.6667 1.9842 12 1 3.9468 5.7173 1.6718 13 6 2.3057 6.7746 2.5352 14 7 1.0481 6.7132 2.9152 15 14 3.2670 8.3629 2.7405 16 1 3.7345 8.8339 1.4121 17 1 2.3921 9.3956 3.3516 18 1 4.4385 8.1222 3.6208 19 6 3.0405 3.3188 1.1891 20 6 2.2368 -1.1211 -0.7645 21 6 2.2364 -1.1208 0.7655 22 9 3.4363 -0.8049 1.4117 23 9 1.4339 -2.0671 1.4118 24 1 -0.3633 0.5841 -0.8455 25 1 -0.3634 -1.0242 -0.0830 26 1 -0.3633 0.4403 0.9286 27 1 2.5252 1.2700 3.0969 28 1 1.1272 0.6451 2.1845 29 1 0.4786 2.2820 3.9879 30 1 -0.0072 2.8087 2.3582 31 1 2.5182 3.6986 3.8243 32 1 1.0351 4.6660 3.6469 33 1 0.6201 7.4924 3.3031 34 1 3.3056 3.6164 0.1746 35 1 3.9447 3.2061 1.7872 36 1 1.6118 -1.8586 -1.2681 37 1 3.1720 -0.8752 -1.2676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597901930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:46 Heat of formation + Delta-G solvation = -110.630629 kcal Electronic energy + Delta-G solvation = -22307.486208 eV Core-core repulsion = 18721.297084 eV Total energy + Delta-G solvation = -3586.189124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.82035 -47.46665 -40.02267 -37.20374 -36.13059 -33.48237 -31.37720 -30.32789 -28.82634 -25.42654 -25.04085 -22.81810 -22.35789 -21.69215 -19.67400 -18.47300 -17.76351 -17.35154 -16.33650 -16.23284 -15.62442 -15.10159 -14.79147 -14.37734 -14.10306 -13.79377 -13.64831 -13.60924 -13.42414 -13.19506 -12.79659 -12.72501 -12.51814 -12.40748 -12.09914 -11.96077 -10.98159 -10.92302 -10.87393 -10.76696 -10.34784 -10.25313 -9.97120 -9.82552 -9.51984 -9.35727 -8.86877 -8.41107 -7.98132 -6.03954 -4.11179 2.52174 2.83513 2.98252 3.28130 3.30717 3.35071 3.39291 3.98097 4.26720 4.40128 4.41312 4.64793 5.17524 5.23409 5.28253 5.29594 5.47598 5.48570 5.58862 5.60844 5.76120 5.91506 6.08573 6.29407 6.34054 6.43584 6.61218 6.74736 6.88649 7.12532 7.28970 7.66257 7.83004 7.92954 8.04312 8.32457 8.46205 8.91885 9.53779 11.01642 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.033937 B = 0.005016 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.856767 B = 5581.137431 C = 5773.988966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.149 4.149 3 C 0.544 3.456 4 O -0.537 6.537 5 N -0.589 5.589 6 C 0.107 3.893 7 C -0.134 4.134 8 C -0.113 4.113 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.515 4.515 12 H 0.057 0.943 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.117 3.883 20 C -0.143 4.143 21 C 0.205 3.795 22 F -0.152 7.152 23 F -0.156 7.156 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.097 0.903 33 H 0.261 0.739 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.130 0.870 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 -15.837 -2.360 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.153 4.153 3 C 0.329 3.671 4 O -0.414 6.414 5 N -0.319 5.319 6 C -0.016 4.016 7 C -0.172 4.172 8 C -0.151 4.151 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.554 4.554 12 H 0.075 0.925 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.004 4.004 20 C -0.181 4.181 21 C 0.168 3.832 22 F -0.132 7.132 23 F -0.137 7.137 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.539 -15.461 -2.762 15.781 hybrid contribution 0.490 0.719 0.520 1.014 sum -1.048 -14.742 -2.241 14.948 Atomic orbital electron populations 1.21377 0.88018 1.03581 1.04274 1.23002 0.98722 0.91372 1.02214 1.19001 0.79384 0.84565 0.84120 1.90695 1.50273 1.69192 1.31283 1.48219 1.53188 1.23083 1.07431 1.21824 0.97065 0.96778 0.85885 1.22009 0.98629 0.97150 0.99411 1.21643 0.98667 0.94557 1.00219 1.18970 0.94759 0.91384 0.92711 0.95155 1.21025 0.97970 0.95298 1.41081 0.92493 1.24932 0.94877 0.98699 0.95235 1.69861 1.10962 1.29996 1.41956 0.86626 0.79803 0.82948 0.78458 1.20214 1.21296 1.20239 1.22088 0.94797 0.81263 1.02242 1.24408 1.04448 0.98584 0.90641 1.20076 0.80989 0.92964 0.89136 1.93072 1.44236 1.92555 1.83374 1.93022 1.72182 1.64892 1.83557 0.90023 0.90707 0.90400 0.91625 0.91476 0.92282 0.92287 0.94475 0.88499 0.92889 0.90136 0.92323 0.85179 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.23 37.16 0.34 -0.92 16 2 C -0.15 -1.99 1.31 -155.66 -0.20 -2.19 16 3 C 0.54 9.82 6.49 -10.99 -0.07 9.75 16 4 O -0.54 -11.42 16.43 5.56 0.09 -11.33 16 5 N -0.59 -11.03 2.97 -172.77 -0.51 -11.54 16 6 C 0.11 1.75 5.53 -3.71 -0.02 1.73 16 7 C -0.13 -2.38 6.08 -26.61 -0.16 -2.54 16 8 C -0.11 -2.51 4.96 -26.69 -0.13 -2.65 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.52 -13.85 8.56 -34.44 -0.29 -14.14 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 15 Si 0.89 20.99 29.54 -169.99 -5.02 15.96 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 C 0.12 2.52 5.67 -3.71 -0.02 2.50 16 20 C -0.14 -1.53 9.83 -26.73 -0.26 -1.79 16 21 C 0.21 2.59 4.00 -26.73 -0.11 2.48 16 22 F -0.15 -2.23 16.67 2.25 0.04 -2.20 16 23 F -0.16 -1.87 16.98 2.25 0.04 -1.83 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 26 H 0.08 0.86 6.91 -51.93 -0.36 0.51 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.94 4.44 -51.93 -0.23 0.71 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.44 6.04 -51.93 -0.31 2.13 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.08 1.85 7.00 -51.93 -0.36 1.49 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.13 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -29.62 306.01 -6.38 -36.00 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.02 Total: -0.22 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.23 Total: -5.33 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.11 Total: -35.67 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.62 -6.38 -36.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.629 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds