Wall clock time and date at job start Mon Mar 30 2020 01:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 115.55334 * 2 1 4 4 O 1.21282 * 119.99769 * 261.29123 * 3 2 1 5 5 N 1.34783 * 120.00205 * 81.28674 * 3 2 1 6 6 C 1.46920 * 120.62840 * 354.93537 * 5 3 2 7 7 C 1.53198 * 108.77593 * 233.58789 * 6 5 3 8 8 C 1.53045 * 109.30841 * 305.36556 * 7 6 5 9 9 C 1.53041 * 109.53783 * 61.36491 * 8 7 6 10 10 H 1.09000 * 109.49455 * 58.58303 * 9 8 7 11 11 C 1.50698 * 109.49764 * 178.64915 * 9 8 7 12 12 H 1.07999 * 120.00420 * 119.93677 * 11 9 8 13 13 C 1.37885 * 119.99912 * 299.93888 * 11 9 8 14 14 N 1.31516 * 119.99855 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99841 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47042 * 60.00017 * 15 13 11 17 17 H 1.48501 * 109.46971 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47101 * 299.99563 * 15 13 11 19 19 C 1.46926 * 120.62872 * 174.91314 * 5 3 2 20 20 C 1.53000 * 117.51386 * 214.29285 * 2 1 3 21 21 C 1.53001 * 60.00349 * 252.52218 * 20 2 1 22 22 F 1.39898 * 117.49897 * 252.51777 * 21 20 2 23 23 F 1.39899 * 117.51711 * 107.48425 * 21 20 2 24 24 H 1.08996 * 109.47169 * 55.36459 * 1 2 3 25 25 H 1.08997 * 109.47683 * 175.36824 * 1 2 3 26 26 H 1.09006 * 109.47050 * 295.36577 * 1 2 3 27 27 H 1.09000 * 109.58963 * 113.79842 * 6 5 3 28 28 H 1.09000 * 109.58932 * 353.37321 * 6 5 3 29 29 H 1.09003 * 109.49443 * 185.41723 * 7 6 5 30 30 H 1.08996 * 109.52308 * 65.33533 * 7 6 5 31 31 H 1.08996 * 109.46005 * 301.34209 * 8 7 6 32 32 H 1.08995 * 109.45897 * 181.38533 * 8 7 6 33 33 H 0.97002 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.08993 * 109.58773 * 6.62674 * 19 5 3 35 35 H 1.08999 * 109.58441 * 246.20154 * 19 5 3 36 36 H 1.08998 * 117.50266 * 0.02562 * 20 2 1 37 37 H 1.09005 * 117.49629 * 145.03018 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3595 0.0000 4 8 2.5850 1.8380 -1.0382 5 7 2.3112 2.0438 1.1538 6 6 1.7280 1.5287 2.4000 7 6 0.8407 2.6155 3.0153 8 6 1.6572 3.8985 3.1866 9 6 2.1385 4.3855 1.8179 10 1 1.2787 4.5619 1.1716 11 6 2.9142 5.6667 1.9842 12 1 3.9468 5.7173 1.6718 13 6 2.3057 6.7746 2.5352 14 7 1.0481 6.7132 2.9152 15 14 3.2670 8.3629 2.7405 16 1 3.7345 8.8339 1.4121 17 1 2.3921 9.3956 3.3516 18 1 4.4385 8.1222 3.6208 19 6 3.0405 3.3188 1.1891 20 6 2.2368 -1.1211 -0.7645 21 6 2.2364 -1.1208 0.7655 22 9 3.4363 -0.8049 1.4117 23 9 1.4339 -2.0671 1.4118 24 1 -0.3633 0.5841 -0.8455 25 1 -0.3634 -1.0242 -0.0830 26 1 -0.3633 0.4403 0.9286 27 1 2.5252 1.2700 3.0969 28 1 1.1272 0.6451 2.1845 29 1 0.4786 2.2820 3.9879 30 1 -0.0072 2.8087 2.3582 31 1 2.5182 3.6986 3.8243 32 1 1.0351 4.6660 3.6469 33 1 0.6201 7.4924 3.3031 34 1 3.3056 3.6164 0.1746 35 1 3.9447 3.2061 1.7872 36 1 1.6118 -1.8586 -1.2681 37 1 3.1720 -0.8752 -1.2676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597901930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:46 Heat of formation + Delta-G solvation = -127.602710 kcal Electronic energy + Delta-G solvation = -22308.222173 eV Core-core repulsion = 18721.297084 eV Total energy + Delta-G solvation = -3586.925089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.80603 -48.45868 -41.43410 -38.71507 -37.35578 -35.36151 -33.08280 -32.07818 -29.74049 -27.23958 -26.66139 -23.97828 -23.56351 -23.30157 -21.25666 -19.79452 -19.03201 -18.59808 -18.15842 -17.34130 -17.01453 -16.65668 -16.32711 -15.82946 -15.21643 -15.11153 -15.04894 -14.71761 -14.67922 -14.58151 -14.38285 -13.97017 -13.79214 -13.67681 -13.38394 -13.28168 -12.86018 -12.73307 -12.61677 -12.00365 -11.88824 -11.84162 -11.65383 -11.40971 -11.20011 -10.88197 -10.66030 -10.44236 -9.60656 -8.11653 -6.26735 1.26585 1.41865 1.43080 1.50531 1.77010 1.91368 2.01307 2.43017 3.01574 3.13846 3.15197 3.44769 3.59641 3.94606 4.15423 4.23318 4.30848 4.45441 4.51865 4.53422 4.63149 4.72264 4.73203 4.76094 4.79070 4.89873 5.04692 5.12745 5.22357 5.40820 5.48410 5.59465 5.90257 6.09666 6.31919 6.39018 6.81274 6.99810 7.41361 8.92167 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.033937 B = 0.005016 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.856767 B = 5581.137431 C = 5773.988966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.162 4.162 3 C 0.538 3.462 4 O -0.577 6.577 5 N -0.595 5.595 6 C 0.112 3.888 7 C -0.125 4.125 8 C -0.106 4.106 9 C 0.042 3.958 10 H -0.010 1.010 11 C -0.540 4.540 12 H 0.053 0.947 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 0.955 3.045 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.129 3.871 20 C -0.119 4.119 21 C 0.204 3.796 22 F -0.168 7.168 23 F -0.148 7.148 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.262 0.738 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.172 0.828 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 -17.904 -2.096 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.167 4.167 3 C 0.326 3.674 4 O -0.458 6.458 5 N -0.326 5.326 6 C -0.010 4.010 7 C -0.163 4.163 8 C -0.144 4.144 9 C 0.023 3.977 10 H 0.008 0.992 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.181 4.181 14 N -0.552 5.552 15 Si 0.781 3.219 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.194 1.194 19 C 0.007 3.993 20 C -0.156 4.156 21 C 0.167 3.833 22 F -0.148 7.148 23 F -0.129 7.129 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.189 0.811 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.865 -17.555 -2.483 17.828 hybrid contribution 0.584 1.372 0.413 1.548 sum -1.281 -16.183 -2.070 16.365 Atomic orbital electron populations 1.21449 0.85971 1.05610 1.03973 1.22977 0.99979 0.88846 1.04851 1.19820 0.78506 0.86105 0.82985 1.90665 1.51868 1.70675 1.32567 1.48273 1.53203 1.22157 1.08921 1.21937 0.97302 0.96947 0.84847 1.21907 0.97861 0.95398 1.01148 1.21437 0.98640 0.96032 0.98308 1.18864 0.93526 0.91855 0.93429 0.99156 1.21390 0.98147 0.96913 1.41348 0.92910 1.25676 0.95781 1.01714 0.94904 1.69994 1.12135 1.30739 1.42287 0.85655 0.78703 0.79166 0.78396 1.20100 1.20733 1.19379 1.21647 0.94682 0.82391 1.00567 1.24632 1.04408 0.97252 0.89336 1.20162 0.80301 0.92552 0.90258 1.93045 1.45199 1.92733 1.83827 1.93043 1.71892 1.64353 1.83593 0.90458 0.87394 0.90749 0.90697 0.88465 0.89172 0.93062 0.94520 0.91538 0.92864 0.92358 0.91929 0.81082 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.23 71.98 0.66 -1.46 16 2 C -0.16 -3.94 1.31 -52.93 -0.07 -4.01 16 3 C 0.54 19.21 6.49 87.65 0.57 19.78 16 4 O -0.58 -24.99 16.43 -3.04 -0.05 -25.04 16 5 N -0.60 -22.26 2.97 -818.92 -2.43 -24.70 16 6 C 0.11 3.44 5.53 86.37 0.48 3.92 16 7 C -0.13 -4.33 6.08 30.68 0.19 -4.14 16 8 C -0.11 -4.80 4.96 30.62 0.15 -4.65 16 9 C 0.04 2.15 2.25 -11.46 -0.03 2.13 16 10 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 11 C -0.54 -29.95 8.56 25.60 0.22 -29.73 16 12 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 13 C 0.02 1.02 5.30 84.66 0.45 1.47 16 14 N -0.91 -52.06 11.32 21.45 0.24 -51.82 16 15 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 19 C 0.13 5.77 5.67 86.36 0.49 6.26 16 20 C -0.12 -2.13 9.83 30.59 0.30 -1.83 16 21 C 0.20 4.51 4.00 30.60 0.12 4.63 16 22 F -0.17 -4.58 16.67 44.97 0.75 -3.83 16 23 F -0.15 -2.97 16.98 44.97 0.76 -2.20 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.11 1.33 7.86 -2.39 -0.02 1.31 16 26 H 0.07 1.44 6.91 -2.38 -0.02 1.42 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.10 2.45 4.44 -2.39 -0.01 2.44 16 29 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 3.43 6.04 -2.39 -0.01 3.42 16 33 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 34 H 0.06 2.83 7.00 -2.39 -0.02 2.81 16 35 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.17 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -66.67 306.01 5.91 -60.76 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.08 Total: 8.86 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 3.53 Total: -7.63 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -2.19 Total: -76.52 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 1.51 Total: -6.03 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -66.67 5.91 -60.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.842 kcal (2) G-P(sol) polarization free energy of solvation -66.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds