Wall clock time and date at job start Mon Mar 30 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47037 * 2 1 4 4 H 1.08999 * 109.47064 * 305.00092 * 3 2 1 5 5 C 1.50696 * 109.46997 * 185.00153 * 3 2 1 6 6 H 1.08001 * 120.00119 * 239.99789 * 5 3 2 7 7 C 1.37878 * 120.00087 * 59.99828 * 5 3 2 8 8 N 1.31510 * 120.00195 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47400 * 59.99645 * 9 7 5 11 11 H 1.48495 * 109.47241 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46801 * 299.99992 * 9 7 5 13 13 N 1.46493 * 109.46908 * 64.99987 * 3 2 1 14 14 C 1.34779 * 120.00122 * 274.99724 * 13 3 2 15 15 O 1.21763 * 120.00132 * 0.02562 * 14 13 3 16 16 C 1.46294 * 120.00118 * 180.02562 * 14 13 3 17 17 N 1.32515 * 125.56432 * 0.02642 * 16 14 13 18 18 C 1.32027 * 109.86691 * 179.45920 * 17 16 14 19 19 C 1.39372 * 107.93075 * 0.59408 * 18 17 16 20 20 C 1.40416 * 133.41814 * 179.31761 * 19 18 17 21 21 C 1.36323 * 119.19323 * 179.97438 * 20 19 18 22 22 C 1.40332 * 119.58521 * 359.97438 * 21 20 19 23 23 C 1.35170 * 120.39459 * 0.02562 * 22 21 20 24 24 N 1.36179 * 120.59891 * 0.23719 * 23 22 21 25 25 H 1.09003 * 109.47423 * 299.99684 * 1 2 3 26 26 H 1.09001 * 109.47270 * 60.00103 * 1 2 3 27 27 H 1.08999 * 109.47227 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46765 * 240.00011 * 2 1 3 29 29 H 1.09001 * 109.47270 * 119.99897 * 2 1 3 30 30 H 0.97002 * 120.00377 * 179.97438 * 8 7 5 31 31 H 0.97005 * 120.00379 * 95.00322 * 13 3 2 32 32 H 1.08001 * 126.03224 * 179.90762 * 18 17 16 33 33 H 1.08005 * 120.40111 * 0.02562 * 20 19 18 34 34 H 1.07995 * 120.20892 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.79801 * 179.97438 * 22 21 20 36 36 H 1.08002 * 119.69595 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3365 -2.1728 9 14 6.0050 0.8800 -1.3812 10 1 6.5967 0.1453 -0.2344 11 1 6.3978 0.2167 -2.6504 12 1 6.5004 2.2799 -1.3809 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3669 15 8 -0.3427 2.6318 0.4307 16 6 0.0483 3.3188 2.6168 17 7 0.8043 3.4190 3.7005 18 6 0.1545 4.0788 4.6415 19 6 -1.1020 4.4144 4.1406 20 6 -2.2067 5.0925 4.6805 21 6 -3.3208 5.2647 3.9141 22 6 -3.3444 4.7637 2.6035 23 6 -2.2715 4.1134 2.1005 24 7 -1.1544 3.9301 2.8575 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0613 -2.9498 31 1 2.2719 2.1231 1.9978 32 1 0.5265 4.3075 5.6293 33 1 -2.1737 5.4738 5.6905 34 1 -4.1799 5.7835 4.3130 35 1 -4.2254 4.8978 1.9934 36 1 -2.3020 3.7320 1.0905 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601445586.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:11 Heat of formation + Delta-G solvation = 25.700988 kcal Electronic energy + Delta-G solvation = -20627.273744 eV Core-core repulsion = 17497.685589 eV Total energy + Delta-G solvation = -3129.588155 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.88848 -40.52360 -38.47105 -37.01595 -34.49713 -34.20296 -32.98923 -31.88709 -29.75289 -28.62905 -25.55538 -24.82954 -24.37696 -23.20648 -22.09844 -21.20850 -19.62242 -18.17281 -17.86733 -17.34513 -17.24509 -17.08541 -16.43494 -16.12103 -15.98368 -15.59524 -15.11600 -14.62123 -14.59132 -13.95346 -13.54944 -13.21982 -13.19135 -13.03826 -12.94351 -12.68435 -12.67010 -12.22188 -12.11127 -11.76287 -11.63928 -11.50793 -11.12471 -11.04776 -10.55725 -10.41222 -9.77433 -8.53665 -8.18209 -6.35667 -0.19261 -0.14372 1.31769 1.33678 1.44549 1.46574 1.54608 2.36098 2.40344 2.49268 2.62605 3.10899 3.40610 3.48312 3.78677 3.81377 3.97745 4.18205 4.41801 4.44727 4.51155 4.68980 4.74060 4.87561 5.01201 5.09430 5.18726 5.21813 5.37809 5.46815 5.47455 5.56695 5.63010 5.73808 5.84874 5.93405 6.11105 6.56488 6.68845 6.91454 7.25002 7.41047 8.87258 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.004491 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.604993 B = 6233.645344 C = 6741.337611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.005 0.995 5 C -0.554 4.554 6 H 0.066 0.934 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.972 3.028 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.683 5.683 14 C 0.592 3.408 15 O -0.585 6.585 16 C 0.035 3.965 17 N -0.425 5.425 18 C -0.023 4.023 19 C 0.013 3.987 20 C -0.077 4.077 21 C -0.102 4.102 22 C -0.108 4.108 23 C 0.017 3.983 24 N -0.321 5.321 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.267 0.733 31 H 0.405 0.595 32 H 0.224 0.776 33 H 0.193 0.807 34 H 0.188 0.812 35 H 0.186 0.814 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.630 9.908 15.160 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.023 0.977 5 C -0.592 4.592 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.796 3.204 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.330 5.330 14 C 0.378 3.622 15 O -0.467 6.467 16 C -0.210 4.210 17 N -0.142 5.142 18 C -0.186 4.186 19 C -0.100 4.100 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.106 4.106 24 N 0.010 4.990 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.240 0.760 32 H 0.241 0.759 33 H 0.210 0.790 34 H 0.205 0.795 35 H 0.203 0.797 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.246 9.297 14.099 21.463 hybrid contribution 0.604 0.003 -0.486 0.775 sum -12.643 9.300 13.613 20.776 Atomic orbital electron populations 1.21659 0.96903 0.99295 1.00038 1.21797 0.93862 0.98837 1.01463 1.18502 0.93968 0.89292 0.80411 0.97672 1.21502 0.91208 1.39543 1.06962 0.91552 1.25734 1.03486 0.94071 0.94746 1.70018 1.37183 1.38015 1.09776 0.85403 0.78828 0.78460 0.77687 1.19027 1.20646 1.19779 1.46005 1.14341 1.54626 1.18063 1.16483 0.82884 0.78432 0.84378 1.90742 1.52481 1.62905 1.40568 1.22102 0.85648 1.14894 0.98383 1.69861 1.30396 1.14670 0.99269 1.23441 0.90158 1.03832 1.01214 1.20741 1.00202 1.04134 0.84961 1.21160 0.89206 0.96595 1.02673 1.21759 0.99569 0.98360 0.92595 1.21535 0.97348 0.96119 0.97848 1.22281 0.85933 1.03661 0.98712 1.42536 1.11096 1.32952 1.12376 0.94730 0.94877 0.93252 0.90249 0.94387 0.92370 0.76030 0.75937 0.78964 0.79466 0.79669 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.51 71.98 0.61 -5.14 16 2 C -0.12 -6.28 5.45 30.60 0.17 -6.11 16 3 C 0.28 15.40 2.24 44.25 0.10 15.50 16 4 H 0.01 0.34 7.58 -2.39 -0.02 0.32 16 5 C -0.55 -31.11 8.73 25.60 0.22 -30.89 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.02 1.12 5.29 84.66 0.45 1.56 16 8 N -0.91 -52.99 11.29 21.45 0.24 -52.75 16 9 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.68 -33.01 5.02 -450.42 -2.26 -35.27 16 14 C 0.59 27.61 6.34 86.34 0.55 28.16 16 15 O -0.58 -29.41 12.46 -4.55 -0.06 -29.47 16 16 C 0.04 1.40 7.82 135.57 1.06 2.46 16 17 N -0.43 -15.31 10.79 -187.51 -2.02 -17.33 16 18 C -0.02 -0.61 12.00 84.94 1.02 0.41 16 19 C 0.01 0.31 6.80 39.10 0.27 0.58 16 20 C -0.08 -1.06 10.11 22.35 0.23 -0.84 16 21 C -0.10 -1.11 10.08 22.33 0.23 -0.89 16 22 C -0.11 -1.73 9.98 22.07 0.22 -1.51 16 23 C 0.02 0.46 10.52 83.31 0.88 1.34 16 24 N -0.32 -10.39 2.95 -340.21 -1.00 -11.39 16 25 H 0.03 1.62 5.64 -2.39 -0.01 1.61 16 26 H 0.03 1.64 7.84 -2.39 -0.02 1.62 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.08 4.50 5.95 -2.39 -0.01 4.48 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.40 18.38 8.18 -92.70 -0.76 17.63 16 32 H 0.22 3.71 8.06 -2.91 -0.02 3.68 16 33 H 0.19 0.97 8.06 -2.91 -0.02 0.94 16 34 H 0.19 0.37 8.06 -2.91 -0.02 0.35 16 35 H 0.19 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.16 4.85 6.77 -2.91 -0.02 4.83 16 Total: -1.00 -74.48 303.75 3.27 -71.22 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.35 Total: 24.85 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.99 Total: 4.64 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -5.04 Total: -116.74 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.06 Total: -29.47 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -74.48 3.27 -71.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445586.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.918 kcal (2) G-P(sol) polarization free energy of solvation -74.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds