Wall clock time and date at job start Mon Mar 30 2020 01:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53006 * 109.46901 * 2 1 4 4 N 1.46499 * 109.46956 * 240.00217 * 2 1 3 5 5 N 1.39857 * 125.45132 * 60.01975 * 4 2 1 6 6 C 1.30252 * 110.09133 * 179.97438 * 5 4 2 7 7 C 1.45982 * 107.77526 * 0.02562 * 6 5 4 8 8 C 1.39869 * 133.92912 * 180.02562 * 7 6 5 9 9 C 1.38332 * 119.44818 * 179.27311 * 8 7 6 10 10 N 1.39597 * 119.85100 * 180.22970 * 9 8 7 11 11 C 1.34777 * 119.99961 * 325.17902 * 10 9 8 12 12 O 1.21763 * 119.99723 * 4.55877 * 11 10 9 13 13 C 1.41804 * 120.00057 * 184.56556 * 11 10 9 14 14 H 1.08002 * 120.00377 * 359.97438 * 13 11 10 15 15 C 1.40134 * 120.00332 * 179.97438 * 13 11 10 16 16 N 1.30631 * 119.99532 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00404 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47085 * 59.99905 * 17 15 13 19 19 H 1.48496 * 109.47025 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46761 * 300.00012 * 17 15 13 21 21 C 1.39685 * 120.29671 * 0.59463 * 9 8 7 22 22 C 1.36396 * 120.74169 * 359.63216 * 21 9 8 23 23 C 1.37104 * 125.44819 * 239.71739 * 4 2 1 24 24 H 1.08999 * 109.46808 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46633 * 300.00194 * 1 2 3 26 26 H 1.09000 * 109.46766 * 59.99994 * 1 2 3 27 27 H 1.09000 * 109.46760 * 119.99449 * 2 1 3 28 28 H 1.08999 * 109.47219 * 59.99648 * 3 2 1 29 29 H 1.08999 * 109.47148 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47147 * 300.00088 * 3 2 1 31 31 H 1.07999 * 126.11286 * 180.02562 * 6 5 4 32 32 H 1.08007 * 120.27195 * 359.94584 * 8 7 6 33 33 H 0.97006 * 120.00274 * 145.18494 * 10 9 8 34 34 H 0.97006 * 120.00378 * 180.02562 * 16 15 13 35 35 H 1.08001 * 119.63410 * 179.60802 * 21 9 8 36 36 H 1.07998 * 119.94605 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0184 -0.6906 -1.1962 5 7 1.7520 -0.3132 -2.5163 6 6 2.3336 -1.1350 -3.3426 7 6 3.0411 -2.1368 -2.5509 8 6 3.8276 -3.2483 -2.8708 9 6 4.3806 -4.0056 -1.8538 10 7 5.1709 -5.1138 -2.1637 11 6 4.8802 -5.8685 -3.2418 12 8 3.9802 -5.5372 -3.9921 13 6 5.6222 -7.0485 -3.5022 14 1 6.4207 -7.3423 -2.8369 15 6 5.3197 -7.8335 -4.6229 16 7 4.3536 -7.4786 -5.4274 17 14 6.2977 -9.3875 -4.9664 18 1 6.1558 -10.3245 -3.8232 19 1 5.7849 -10.0321 -6.2020 20 1 7.7303 -9.0409 -5.1474 21 6 4.1455 -3.6708 -0.5182 22 6 3.3763 -2.5919 -0.1949 23 6 2.8144 -1.8068 -1.2007 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 3.1301 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 2.2987 -1.0843 -4.4209 32 1 4.0106 -3.5067 -3.9034 33 1 5.9292 -5.3408 -1.6030 34 1 4.1438 -8.0221 -6.2030 35 1 4.5773 -4.2732 0.2673 36 1 3.2032 -2.3445 0.8421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613960142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:25 Heat of formation + Delta-G solvation = 25.797455 kcal Electronic energy + Delta-G solvation = -20196.205910 eV Core-core repulsion = 17066.621938 eV Total energy + Delta-G solvation = -3129.583972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.16756 -40.16862 -37.84457 -36.34172 -34.96493 -34.24074 -32.16452 -30.69464 -29.65036 -28.16940 -27.88777 -24.29718 -23.87840 -23.13108 -21.55946 -20.54027 -19.39620 -18.34058 -17.99005 -17.51018 -16.38124 -16.09973 -15.97025 -15.55145 -15.45220 -14.95418 -14.69732 -14.45460 -14.24170 -13.97230 -13.76547 -13.19472 -13.13475 -12.94919 -12.83787 -12.66081 -12.61816 -12.34880 -12.27988 -12.05115 -12.03735 -11.59941 -11.11561 -10.89403 -10.24387 -9.75194 -9.40687 -8.33890 -8.22174 -6.95772 0.05864 0.63301 1.41560 1.44252 1.50892 1.56722 1.57859 2.23735 2.41172 2.91028 3.07934 3.47781 3.65358 3.73617 3.89318 4.02117 4.08614 4.15691 4.28236 4.49492 4.63697 4.69078 4.73540 4.79487 4.83432 4.96179 5.12767 5.23678 5.25007 5.25392 5.30854 5.57850 5.62794 5.73108 5.93601 6.23581 6.24984 6.50899 6.70869 6.78312 7.49579 8.44698 8.62967 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044628 B = 0.003819 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.251605 B = 7329.799105 C = 7675.003315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.153 3.847 3 C -0.154 4.154 4 N -0.402 5.402 5 N -0.262 5.262 6 C 0.055 3.945 7 C -0.181 4.181 8 C -0.086 4.086 9 C 0.116 3.884 10 N -0.694 5.694 11 C 0.530 3.470 12 O -0.615 6.615 13 C -0.567 4.567 14 H 0.091 0.909 15 C 0.032 3.968 16 N -0.803 5.803 17 Si 1.001 2.999 18 H -0.253 1.253 19 H -0.275 1.275 20 H -0.253 1.253 21 C -0.098 4.098 22 C -0.116 4.116 23 C 0.089 3.911 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.208 0.792 32 H 0.105 0.895 33 H 0.406 0.594 34 H 0.278 0.722 35 H 0.159 0.841 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 11.587 13.369 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 C -0.211 4.211 4 N -0.193 5.193 5 N -0.074 5.074 6 C -0.142 4.142 7 C -0.189 4.189 8 C -0.110 4.110 9 C 0.018 3.982 10 N -0.340 5.340 11 C 0.339 3.661 12 O -0.502 6.502 13 C -0.602 4.602 14 H 0.109 0.891 15 C -0.186 4.186 16 N -0.432 5.432 17 Si 0.819 3.181 18 H -0.177 1.177 19 H -0.199 1.199 20 H -0.177 1.177 21 C -0.121 4.121 22 C -0.138 4.138 23 C -0.025 4.025 24 H 0.065 0.935 25 H 0.122 0.878 26 H 0.072 0.928 27 H 0.137 0.863 28 H 0.121 0.879 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.224 0.776 32 H 0.123 0.877 33 H 0.241 0.759 34 H 0.088 0.912 35 H 0.176 0.824 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.298 12.871 12.933 18.542 hybrid contribution 1.072 -1.577 -0.709 2.035 sum -2.225 11.294 12.224 16.791 Atomic orbital electron populations 1.22123 0.93139 1.02249 1.03831 1.21575 0.95736 0.94207 0.83161 1.22108 1.01151 0.94077 1.03800 1.48671 1.43487 1.22968 1.04165 1.76326 1.20209 1.22366 0.88542 1.25315 0.96236 0.92092 1.00528 1.20000 1.05932 0.99496 0.93479 1.20659 0.98612 0.92325 0.99451 1.17933 0.97585 0.89222 0.93423 1.43552 1.31946 1.27181 1.31272 1.17416 0.84401 0.84539 0.79770 1.90596 1.35984 1.74260 1.49351 1.20564 1.19588 1.08180 1.11905 0.89073 1.27017 0.95070 1.02440 0.94101 1.70171 1.25184 1.36984 1.10831 0.85024 0.78707 0.75842 0.78480 1.17693 1.19939 1.17701 1.20811 0.99197 0.98068 0.94014 1.19839 1.00270 0.95367 0.98278 1.19016 0.96893 0.91296 0.95303 0.93455 0.87763 0.92834 0.86301 0.87851 0.92997 0.92847 0.77578 0.87701 0.75853 0.91233 0.82357 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.44 71.99 0.68 -2.07 16 2 C 0.15 3.02 3.67 45.00 0.17 3.18 16 3 C -0.15 -2.54 9.44 71.98 0.68 -1.86 16 4 N -0.40 -11.87 3.33 -318.99 -1.06 -12.93 16 5 N -0.26 -8.63 12.22 -53.05 -0.65 -9.28 16 6 C 0.06 1.94 12.28 86.93 1.07 3.00 16 7 C -0.18 -7.22 6.36 -20.24 -0.13 -7.35 16 8 C -0.09 -4.00 8.74 22.69 0.20 -3.81 16 9 C 0.12 4.96 6.30 38.28 0.24 5.20 16 10 N -0.69 -31.73 5.31 -311.39 -1.65 -33.38 16 11 C 0.53 30.44 7.41 85.12 0.63 31.07 16 12 O -0.61 -40.48 12.28 -4.55 -0.06 -40.54 16 13 C -0.57 -31.27 9.31 23.61 0.22 -31.05 16 14 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 15 C 0.03 1.72 5.50 85.33 0.47 2.19 16 16 N -0.80 -48.08 11.73 21.85 0.26 -47.83 16 17 Si 1.00 39.55 29.56 68.60 2.03 41.57 16 18 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 19 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 20 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 21 C -0.10 -3.14 9.88 22.19 0.22 -2.92 16 22 C -0.12 -3.28 9.77 22.12 0.22 -3.07 16 23 C 0.09 3.00 6.87 39.24 0.27 3.27 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.12 1.78 7.39 -2.39 -0.02 1.76 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.21 6.13 8.06 -2.91 -0.02 6.11 16 32 H 0.10 5.73 6.20 -2.91 -0.02 5.71 16 33 H 0.41 15.35 8.78 -92.70 -0.81 14.54 16 34 H 0.28 15.04 8.29 -92.70 -0.77 14.27 16 35 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 36 H 0.16 3.09 7.59 -2.91 -0.02 3.07 16 Total: -1.00 -78.03 311.79 4.09 -73.94 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.29 Total: 32.64 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 4.93 Total: -4.21 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -3.11 Total: -103.41 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.06 Total: -40.54 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.57 kcal Total: -78.03 4.09 -73.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613960142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.742 kcal (2) G-P(sol) polarization free energy of solvation -78.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds