Wall clock time and date at job start Mon Mar 30 2020 01:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39898 * 109.47413 * 2 1 4 4 F 1.39904 * 109.46795 * 239.99832 * 2 1 3 5 5 C 1.53001 * 109.46988 * 120.00067 * 2 1 3 6 6 C 1.50697 * 115.54906 * 298.46897 * 5 2 1 7 7 O 1.21279 * 120.00177 * 98.43926 * 6 5 2 8 8 N 1.34781 * 119.99726 * 278.43908 * 6 5 2 9 9 C 1.46501 * 119.99740 * 185.02870 * 8 6 5 10 10 C 1.53001 * 109.46809 * 185.05867 * 9 8 6 11 11 C 1.50693 * 115.55315 * 273.69197 * 10 9 8 12 12 H 1.07999 * 120.00083 * 114.69222 * 11 10 9 13 13 C 1.37877 * 120.00245 * 294.69877 * 11 10 9 14 14 N 1.31515 * 119.99765 * 5.56940 * 13 11 10 15 15 Si 1.86799 * 120.00093 * 185.57373 * 13 11 10 16 16 H 1.48501 * 109.47203 * 59.99740 * 15 13 11 17 17 H 1.48496 * 109.47078 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47089 * 299.99639 * 15 13 11 19 19 C 1.53008 * 117.49513 * 127.98643 * 10 9 8 20 20 C 1.53001 * 59.99983 * 252.50918 * 19 10 9 21 21 C 1.53000 * 117.51747 * 84.16474 * 5 2 1 22 22 C 1.53001 * 117.49669 * 152.79466 * 5 2 1 23 23 H 1.09005 * 109.47094 * 305.77802 * 1 2 3 24 24 H 1.09004 * 109.47096 * 65.77807 * 1 2 3 25 25 H 1.08995 * 109.47435 * 185.77984 * 1 2 3 26 26 H 0.96999 * 120.00080 * 5.01630 * 8 6 5 27 27 H 1.08996 * 109.47325 * 65.05823 * 9 8 6 28 28 H 1.08999 * 109.46801 * 305.05274 * 9 8 6 29 29 H 0.97006 * 120.00073 * 185.03808 * 14 13 11 30 30 H 1.08995 * 117.50238 * 0.02562 * 19 10 9 31 31 H 1.09005 * 117.49541 * 145.02329 * 19 10 9 32 32 H 1.08995 * 117.50236 * 252.51467 * 20 19 10 33 33 H 1.09001 * 117.51665 * 107.48454 * 20 19 10 34 34 H 1.08997 * 117.50037 * 214.96875 * 21 5 2 35 35 H 1.09003 * 117.49714 * 359.97438 * 21 5 2 36 36 H 1.08994 * 117.50255 * 359.97438 * 22 5 2 37 37 H 1.09003 * 117.49586 * 144.97464 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 1.6456 -0.1006 2.5646 7 8 0.7020 -0.5428 3.1851 8 7 2.3415 0.9460 3.0514 9 6 2.0289 1.4792 4.3797 10 6 2.8696 2.7313 4.6373 11 6 4.2431 2.4862 5.2068 12 1 5.1201 2.7321 4.6265 13 6 4.3802 1.9479 6.4687 14 7 3.3174 1.5469 7.1315 15 14 6.0754 1.7883 7.2370 16 1 6.6957 3.1327 7.3511 17 1 5.9517 1.1845 8.5880 18 1 6.9263 0.9214 6.3828 19 6 2.1342 3.9962 5.0848 20 6 2.7056 3.9041 3.6684 21 6 2.1456 -2.2465 1.1913 22 6 3.4135 -1.3905 1.1674 23 1 -0.3633 0.6008 0.8338 24 1 -0.3633 0.4216 -0.9372 25 1 -0.3634 -1.0224 0.1035 26 1 3.0493 1.3460 2.5225 27 1 2.2557 0.7275 5.1356 28 1 0.9707 1.7358 4.4283 29 1 3.4049 1.2363 8.0463 30 1 1.0516 3.9363 5.1960 31 1 2.6439 4.6513 5.7914 32 1 3.5910 4.4984 3.4432 33 1 1.9990 3.7835 2.8472 34 1 1.9298 -2.8010 2.1045 35 1 1.8512 -2.7365 0.2631 36 1 3.9535 -1.3173 0.2235 37 1 4.0320 -1.3814 2.0649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692850838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:18 Heat of formation + Delta-G solvation = -94.659824 kcal Electronic energy + Delta-G solvation = -21992.454518 eV Core-core repulsion = 18406.957940 eV Total energy + Delta-G solvation = -3585.496578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.03176 -47.02072 -39.63901 -37.09368 -36.15818 -33.24873 -32.10271 -31.32267 -26.84388 -25.51261 -24.43390 -22.62011 -22.08856 -21.24695 -19.51762 -19.19188 -17.81100 -17.34842 -16.38157 -16.25933 -15.68417 -15.13989 -14.73759 -14.43584 -14.07919 -13.84090 -13.79403 -13.37135 -13.25543 -13.04346 -12.62100 -12.55888 -12.24173 -11.74109 -11.65756 -11.61877 -11.55983 -11.11621 -10.90472 -10.68418 -10.55027 -10.41954 -10.32867 -9.75236 -9.41311 -8.99213 -8.64711 -8.29637 -8.16677 -6.13020 -4.20362 2.82719 3.25046 3.27056 3.31418 3.32887 3.56699 3.78819 4.06582 4.32801 4.34603 4.50564 4.81154 4.87879 5.02220 5.13971 5.33805 5.40570 5.51596 5.55979 5.66922 5.80289 5.83710 5.98066 6.01335 6.28429 6.41568 6.60687 6.62736 6.86511 7.00443 7.20277 7.33717 7.52138 7.80874 8.18690 8.30234 8.71447 8.82297 9.45646 10.94841 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.005585 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.383913 B = 5012.252437 C = 5389.822988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.334 3.666 3 F -0.192 7.192 4 F -0.197 7.197 5 C -0.218 4.218 6 C 0.546 3.454 7 O -0.542 6.542 8 N -0.695 5.695 9 C 0.159 3.841 10 C 0.035 3.965 11 C -0.498 4.498 12 H 0.061 0.939 13 C 0.072 3.928 14 N -0.877 5.877 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.171 4.171 20 C -0.206 4.206 21 C -0.126 4.126 22 C -0.148 4.148 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.401 0.599 27 H 0.093 0.907 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 -4.454 -12.959 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.298 3.702 3 F -0.172 7.172 4 F -0.178 7.178 5 C -0.222 4.222 6 C 0.329 3.671 7 O -0.420 6.420 8 N -0.342 5.342 9 C 0.037 3.963 10 C 0.034 3.966 11 C -0.536 4.536 12 H 0.079 0.921 13 C -0.131 4.131 14 N -0.513 5.513 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.209 4.209 20 C -0.243 4.243 21 C -0.164 4.164 22 C -0.185 4.185 23 H 0.110 0.890 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.235 0.765 27 H 0.111 0.889 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.343 -4.883 -12.327 13.673 hybrid contribution 1.308 0.366 0.186 1.371 sum -2.035 -4.517 -12.140 13.112 Atomic orbital electron populations 1.22700 0.90716 1.05994 1.05124 1.20042 0.93749 0.75149 0.81279 1.93048 1.90584 1.36945 1.96673 1.92986 1.90707 1.81109 1.52978 1.22452 1.06346 0.98613 0.94838 1.18811 0.83047 0.80794 0.84483 1.90680 1.28356 1.62789 1.60171 1.46148 1.36749 1.31296 1.20047 1.21194 0.96314 0.97592 0.81236 1.19077 0.95636 0.84965 0.96934 1.20436 0.89872 1.42329 1.00947 0.92090 1.24977 0.96720 0.94125 0.97325 1.69926 1.28827 1.41560 1.11013 0.86673 0.84501 0.78429 0.78510 1.20193 1.21204 1.20173 1.22771 0.97522 1.04731 0.95901 1.22881 1.02151 1.06583 0.92685 1.23011 0.99939 0.88636 1.04780 1.23188 0.89507 1.00696 1.05086 0.88987 0.90024 0.88952 0.76531 0.88915 0.94102 0.92626 0.91526 0.90038 0.90278 0.91279 0.86995 0.87337 0.87260 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 9.13 37.16 0.34 -1.86 16 2 C 0.33 4.50 2.08 -26.73 -0.06 4.44 16 3 F -0.19 -2.88 16.94 2.25 0.04 -2.85 16 4 F -0.20 -2.51 15.63 2.25 0.04 -2.48 16 5 C -0.22 -3.15 1.68 -155.66 -0.26 -3.42 16 6 C 0.55 10.14 6.20 -10.98 -0.07 10.07 16 7 O -0.54 -11.73 16.99 5.56 0.09 -11.63 16 8 N -0.69 -13.62 5.44 -60.29 -0.33 -13.95 16 9 C 0.16 3.66 5.49 -4.04 -0.02 3.64 16 10 C 0.03 0.81 1.44 -155.66 -0.22 0.59 16 11 C -0.50 -12.86 8.82 -34.44 -0.30 -13.16 16 12 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 13 C 0.07 1.90 5.36 -17.82 -0.10 1.81 16 14 N -0.88 -24.09 12.00 55.43 0.67 -23.42 16 15 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.17 -3.81 9.88 -26.73 -0.26 -4.08 16 20 C -0.21 -4.23 9.69 -26.73 -0.26 -4.49 16 21 C -0.13 -1.52 9.61 -26.73 -0.26 -1.78 16 22 C -0.15 -1.84 9.67 -26.73 -0.26 -2.10 16 23 H 0.09 1.20 7.80 -51.93 -0.40 0.80 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.40 7.40 8.36 -40.82 -0.34 7.05 16 27 H 0.09 2.46 6.79 -51.93 -0.35 2.10 16 28 H 0.04 0.96 7.85 -51.93 -0.41 0.55 16 29 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 30 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 31 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.11 1.08 7.83 -51.93 -0.41 0.67 16 36 H 0.11 1.20 7.73 -51.93 -0.40 0.80 16 37 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -28.49 324.45 -6.60 -35.08 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.24 Total: 9.30 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.73 Total: -10.34 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.34 Total: -37.37 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.07 Total: -5.33 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.49 -6.60 -35.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692850838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.575 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds