Wall clock time and date at job start Mon Mar 30 2020 01:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39898 * 109.47413 * 2 1 4 4 F 1.39904 * 109.46795 * 239.99832 * 2 1 3 5 5 C 1.53001 * 109.46988 * 120.00067 * 2 1 3 6 6 C 1.50697 * 115.54906 * 298.46897 * 5 2 1 7 7 O 1.21279 * 120.00177 * 98.43926 * 6 5 2 8 8 N 1.34781 * 119.99726 * 278.43908 * 6 5 2 9 9 C 1.46501 * 119.99740 * 185.02870 * 8 6 5 10 10 C 1.53001 * 109.46809 * 185.05867 * 9 8 6 11 11 C 1.50693 * 115.55315 * 273.69197 * 10 9 8 12 12 H 1.07999 * 120.00083 * 114.69222 * 11 10 9 13 13 C 1.37877 * 120.00245 * 294.69877 * 11 10 9 14 14 N 1.31515 * 119.99765 * 5.56940 * 13 11 10 15 15 Si 1.86799 * 120.00093 * 185.57373 * 13 11 10 16 16 H 1.48501 * 109.47203 * 59.99740 * 15 13 11 17 17 H 1.48496 * 109.47078 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47089 * 299.99639 * 15 13 11 19 19 C 1.53008 * 117.49513 * 127.98643 * 10 9 8 20 20 C 1.53001 * 59.99983 * 252.50918 * 19 10 9 21 21 C 1.53000 * 117.51747 * 84.16474 * 5 2 1 22 22 C 1.53001 * 117.49669 * 152.79466 * 5 2 1 23 23 H 1.09005 * 109.47094 * 305.77802 * 1 2 3 24 24 H 1.09004 * 109.47096 * 65.77807 * 1 2 3 25 25 H 1.08995 * 109.47435 * 185.77984 * 1 2 3 26 26 H 0.96999 * 120.00080 * 5.01630 * 8 6 5 27 27 H 1.08996 * 109.47325 * 65.05823 * 9 8 6 28 28 H 1.08999 * 109.46801 * 305.05274 * 9 8 6 29 29 H 0.97006 * 120.00073 * 185.03808 * 14 13 11 30 30 H 1.08995 * 117.50238 * 0.02562 * 19 10 9 31 31 H 1.09005 * 117.49541 * 145.02329 * 19 10 9 32 32 H 1.08995 * 117.50236 * 252.51467 * 20 19 10 33 33 H 1.09001 * 117.51665 * 107.48454 * 20 19 10 34 34 H 1.08997 * 117.50037 * 214.96875 * 21 5 2 35 35 H 1.09003 * 117.49714 * 359.97438 * 21 5 2 36 36 H 1.08994 * 117.50255 * 359.97438 * 22 5 2 37 37 H 1.09003 * 117.49586 * 144.97464 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 1.6456 -0.1006 2.5646 7 8 0.7020 -0.5428 3.1851 8 7 2.3415 0.9460 3.0514 9 6 2.0289 1.4792 4.3797 10 6 2.8696 2.7313 4.6373 11 6 4.2431 2.4862 5.2068 12 1 5.1201 2.7321 4.6265 13 6 4.3802 1.9479 6.4687 14 7 3.3174 1.5469 7.1315 15 14 6.0754 1.7883 7.2370 16 1 6.6957 3.1327 7.3511 17 1 5.9517 1.1845 8.5880 18 1 6.9263 0.9214 6.3828 19 6 2.1342 3.9962 5.0848 20 6 2.7056 3.9041 3.6684 21 6 2.1456 -2.2465 1.1913 22 6 3.4135 -1.3905 1.1674 23 1 -0.3633 0.6008 0.8338 24 1 -0.3633 0.4216 -0.9372 25 1 -0.3634 -1.0224 0.1035 26 1 3.0493 1.3460 2.5225 27 1 2.2557 0.7275 5.1356 28 1 0.9707 1.7358 4.4283 29 1 3.4049 1.2363 8.0463 30 1 1.0516 3.9363 5.1960 31 1 2.6439 4.6513 5.7914 32 1 3.5910 4.4984 3.4432 33 1 1.9990 3.7835 2.8472 34 1 1.9298 -2.8010 2.1045 35 1 1.8512 -2.7365 0.2631 36 1 3.9535 -1.3173 0.2235 37 1 4.0320 -1.3814 2.0649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692850838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:17 Heat of formation + Delta-G solvation = -110.718799 kcal Electronic energy + Delta-G solvation = -21993.150888 eV Core-core repulsion = 18406.957940 eV Total energy + Delta-G solvation = -3586.192947 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.08738 -48.08456 -41.08913 -38.73898 -37.51950 -34.92047 -34.08441 -32.28275 -28.53624 -27.39881 -25.65526 -23.72638 -23.34892 -22.92629 -21.22871 -20.70403 -19.12118 -18.43011 -18.08999 -17.37416 -17.05309 -16.69965 -16.62813 -15.95890 -15.51949 -15.33824 -14.93149 -14.67655 -14.44124 -14.36944 -14.01250 -13.59913 -13.52789 -13.38305 -13.25300 -13.04182 -12.81783 -12.75820 -12.54970 -12.38443 -12.10372 -11.75757 -11.56431 -11.41295 -10.98694 -10.84476 -10.58140 -10.10331 -9.92252 -8.13099 -6.25690 1.40776 1.43229 1.44423 1.51526 2.03525 2.38575 2.41858 2.63650 3.03537 3.11894 3.23532 3.45560 3.50982 3.66675 3.86884 3.93605 4.20146 4.46291 4.51973 4.58153 4.59068 4.60871 4.67154 4.75219 4.83603 4.93481 4.93837 5.04964 5.05827 5.21662 5.50208 5.56747 5.61251 5.80913 6.34252 6.61892 6.80699 7.21314 7.43036 8.93994 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.005585 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.383913 B = 5012.252437 C = 5389.822988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.337 3.663 3 F -0.203 7.203 4 F -0.189 7.189 5 C -0.234 4.234 6 C 0.547 3.453 7 O -0.577 6.577 8 N -0.693 5.693 9 C 0.177 3.823 10 C 0.009 3.991 11 C -0.508 4.508 12 H 0.061 0.939 13 C 0.026 3.974 14 N -0.908 5.908 15 Si 0.950 3.050 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.270 1.270 19 C -0.178 4.178 20 C -0.174 4.174 21 C -0.111 4.111 22 C -0.140 4.140 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.407 0.593 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 -4.749 -14.941 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.301 3.699 3 F -0.184 7.184 4 F -0.169 7.169 5 C -0.238 4.238 6 C 0.332 3.668 7 O -0.457 6.457 8 N -0.341 5.341 9 C 0.053 3.947 10 C 0.009 3.991 11 C -0.545 4.545 12 H 0.079 0.921 13 C -0.174 4.174 14 N -0.545 5.545 15 Si 0.776 3.224 16 H -0.196 1.196 17 H -0.215 1.215 18 H -0.195 1.195 19 C -0.217 4.217 20 C -0.211 4.211 21 C -0.148 4.148 22 C -0.176 4.176 23 H 0.092 0.908 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.243 0.757 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.576 -5.170 -14.340 15.460 hybrid contribution 1.059 0.443 0.785 1.390 sum -1.517 -4.727 -13.556 14.436 Atomic orbital electron populations 1.22721 0.89461 1.06678 1.05536 1.20059 0.94526 0.74461 0.80888 1.93027 1.90808 1.37828 1.96710 1.93000 1.90727 1.80888 1.52328 1.22318 1.08519 1.00080 0.92911 1.19427 0.81969 0.79807 0.85594 1.90655 1.29803 1.63530 1.61708 1.46032 1.37241 1.31923 1.18931 1.20684 0.95461 0.96498 0.82041 1.19082 0.95118 0.85711 0.99228 1.20735 0.90917 1.41762 1.01086 0.92096 1.25677 0.99748 0.94045 0.97965 1.70061 1.30669 1.42733 1.11043 0.85740 0.80702 0.78489 0.77478 1.19627 1.21467 1.19548 1.22757 0.97758 1.03935 0.97222 1.22871 1.02315 1.03895 0.92049 1.23164 0.98907 0.86905 1.05829 1.23292 0.88973 0.99639 1.05737 0.90845 0.87810 0.87721 0.75748 0.92859 0.95224 0.92984 0.90944 0.91051 0.89329 0.89487 0.87827 0.84431 0.85128 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.99 9.13 71.98 0.66 -3.33 16 2 C 0.34 8.32 2.08 30.60 0.06 8.38 16 3 F -0.20 -5.73 16.94 44.97 0.76 -4.96 16 4 F -0.19 -4.20 15.63 44.97 0.70 -3.49 16 5 C -0.23 -6.39 1.68 -52.93 -0.09 -6.48 16 6 C 0.55 20.26 6.20 87.66 0.54 20.81 16 7 O -0.58 -25.37 16.99 -3.03 -0.05 -25.42 16 8 N -0.69 -27.27 5.44 -463.06 -2.52 -29.78 16 9 C 0.18 8.34 5.49 86.38 0.47 8.81 16 10 C 0.01 0.44 1.44 -52.93 -0.08 0.37 16 11 C -0.51 -26.20 8.82 25.60 0.23 -25.97 16 12 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 13 C 0.03 1.39 5.36 84.65 0.45 1.85 16 14 N -0.91 -51.00 12.00 21.45 0.26 -50.74 16 15 Si 0.95 41.98 29.54 68.60 2.03 44.01 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 C -0.18 -7.94 9.88 30.60 0.30 -7.63 16 20 C -0.17 -6.91 9.69 30.60 0.30 -6.62 16 21 C -0.11 -2.42 9.61 30.60 0.29 -2.12 16 22 C -0.14 -3.17 9.67 30.60 0.30 -2.88 16 23 H 0.07 1.86 7.80 -2.38 -0.02 1.84 16 24 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.41 14.81 8.36 -92.71 -0.77 14.04 16 27 H 0.05 2.94 6.79 -2.39 -0.02 2.92 16 28 H 0.03 1.43 7.85 -2.39 -0.02 1.41 16 29 H 0.26 14.17 8.32 -92.70 -0.77 13.40 16 30 H 0.07 3.09 8.05 -2.39 -0.02 3.07 16 31 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 32 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.14 2.21 7.83 -2.39 -0.02 2.19 16 36 H 0.13 2.43 7.73 -2.39 -0.02 2.42 16 37 H 0.10 2.56 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -61.37 324.45 4.93 -56.44 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.31 Total: 28.78 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 3.44 Total: -14.82 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.26 Total: -80.52 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 1.46 Total: -8.46 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -61.37 4.93 -56.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692850838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.280 kcal (2) G-P(sol) polarization free energy of solvation -61.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds