Wall clock time and date at job start Mon Mar 30 2020 01:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34845 * 119.67567 * 2 1 4 4 C 1.40575 * 120.33915 * 180.02562 * 3 2 1 5 5 C 1.35895 * 119.73094 * 359.97438 * 4 3 2 6 6 C 1.41185 * 119.34466 * 0.02562 * 5 4 3 7 7 N 1.32241 * 132.04553 * 180.33799 * 6 5 4 8 8 C 1.34584 * 109.02479 * 180.09413 * 7 6 5 9 9 C 1.47588 * 125.91929 * 179.86665 * 8 7 6 10 10 O 1.21589 * 120.00278 * 179.68859 * 9 8 7 11 11 N 1.34779 * 119.99906 * 359.68215 * 9 8 7 12 12 C 1.46496 * 119.99965 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47464 * 325.00834 * 12 11 9 14 14 C 1.53006 * 109.46995 * 85.00573 * 12 11 9 15 15 C 1.50699 * 109.47248 * 205.00258 * 12 11 9 16 16 H 1.07999 * 120.00019 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99908 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00364 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99946 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47247 * 89.99769 * 19 17 15 21 21 H 1.48496 * 109.47178 * 209.99766 * 19 17 15 22 22 H 1.48504 * 109.47095 * 329.99574 * 19 17 15 23 23 C 1.36573 * 108.16098 * 359.59357 * 8 7 6 24 24 N 1.36202 * 107.09506 * 0.24911 * 23 8 7 25 25 H 1.08998 * 109.47257 * 269.97679 * 1 2 3 26 26 H 1.08998 * 109.47094 * 29.97817 * 1 2 3 27 27 H 1.09003 * 109.46906 * 149.98045 * 1 2 3 28 28 H 1.07994 * 119.83602 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.13338 * 179.97438 * 4 3 2 30 30 H 1.08004 * 120.32812 * 179.97438 * 5 4 3 31 31 H 0.97003 * 120.00044 * 0.02562 * 11 9 8 32 32 H 1.09001 * 109.47002 * 299.99701 * 14 12 11 33 33 H 1.08993 * 109.46955 * 60.00138 * 14 12 11 34 34 H 1.09000 * 109.47050 * 179.97438 * 14 12 11 35 35 H 0.96999 * 120.00396 * 180.02562 * 18 17 15 36 36 H 1.07998 * 126.45145 * 180.27270 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1747 1.1716 0.0000 4 6 3.5803 1.1879 -0.0005 5 6 4.2679 0.0157 -0.0005 6 6 3.5564 -1.2038 -0.0005 7 7 3.9583 -2.4636 0.0052 8 6 2.8795 -3.2683 0.0001 9 6 2.9001 -4.7440 0.0011 10 8 1.8557 -5.3666 0.0017 11 7 4.0766 -5.4015 0.0012 12 6 4.0971 -6.8663 0.0016 13 1 3.2604 -7.2413 0.5911 14 6 3.9785 -7.3785 -1.4353 15 6 5.3916 -7.3505 0.6022 16 1 6.1256 -6.6383 0.9493 17 6 5.6391 -8.7027 0.7086 18 7 4.7452 -9.5700 0.2864 19 14 7.2435 -9.3029 1.4537 20 1 7.0763 -9.4705 2.9197 21 1 7.6148 -10.6058 0.8457 22 1 8.3148 -8.3095 1.1880 23 6 1.7624 -2.4826 -0.0001 24 7 2.1839 -1.1874 -0.0006 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6267 2.1022 -0.0004 29 1 4.1117 2.1282 -0.0010 30 1 5.3479 0.0169 -0.0014 31 1 4.9098 -4.9048 0.0010 32 1 3.0422 -7.0283 -1.8697 33 1 4.8152 -7.0036 -2.0248 34 1 3.9942 -8.4683 -1.4351 35 1 4.9191 -10.5214 0.3616 36 1 0.7378 -2.8240 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701297760.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:50 Heat of formation + Delta-G solvation = 45.414966 kcal Electronic energy + Delta-G solvation = -20052.624758 eV Core-core repulsion = 16923.891466 eV Total energy + Delta-G solvation = -3128.733293 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.89533 -38.79767 -37.38219 -34.73234 -34.33313 -32.34059 -31.41637 -29.53641 -28.65277 -27.49044 -25.19382 -24.23922 -22.78433 -21.75873 -20.60767 -19.30647 -18.12334 -17.23269 -16.53710 -16.20036 -15.87814 -15.10658 -15.01003 -14.41752 -14.26269 -14.08764 -13.85382 -13.46472 -13.11753 -12.90918 -12.56875 -12.30404 -11.80260 -11.70290 -11.48625 -11.10323 -11.01591 -10.90965 -10.67909 -10.26901 -10.24253 -10.15593 -9.23614 -8.98074 -8.85650 -8.47830 -7.94619 -7.79801 -6.05402 -4.13719 0.50485 1.14458 2.31709 2.38221 3.30053 3.30870 3.36811 3.40145 3.96897 4.00054 4.10694 4.29097 4.43622 4.52753 4.65931 4.80941 5.03307 5.08998 5.26474 5.27139 5.32563 5.43179 5.64646 5.66531 5.86734 5.96213 6.31686 6.47938 6.89071 6.93602 7.04976 7.21799 7.50636 7.59179 7.72648 7.82452 8.00540 8.21296 8.76746 8.84898 9.17765 9.53250 11.00839 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.033388 B = 0.003843 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.411367 B = 7284.580113 C = 7891.671690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.089 3.911 3 C -0.149 4.149 4 C -0.104 4.104 5 C -0.078 4.078 6 C 0.222 3.778 7 N -0.461 5.461 8 C 0.024 3.976 9 C 0.582 3.418 10 O -0.553 6.553 11 N -0.686 5.686 12 C 0.262 3.738 13 H 0.051 0.949 14 C -0.147 4.147 15 C -0.531 4.531 16 H 0.063 0.937 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.030 4.030 24 N -0.364 5.364 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.399 0.601 32 H 0.015 0.985 33 H 0.027 0.973 34 H 0.091 0.909 35 H 0.264 0.736 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 23.010 -1.214 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.014 4.014 3 C -0.170 4.170 4 C -0.127 4.127 5 C -0.098 4.098 6 C -0.023 4.023 7 N -0.183 5.183 8 C -0.109 4.109 9 C 0.365 3.635 10 O -0.432 6.432 11 N -0.332 5.332 12 C 0.161 3.839 13 H 0.068 0.932 14 C -0.206 4.206 15 C -0.570 4.570 16 H 0.081 0.919 17 C -0.137 4.137 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.164 4.164 24 N -0.037 5.037 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.166 0.834 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.232 0.768 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.776 21.946 -1.227 22.726 hybrid contribution 0.460 0.173 0.378 0.620 sum -5.316 22.119 -0.849 22.764 Atomic orbital electron populations 1.20955 0.87917 1.04658 1.04039 1.20327 0.95218 0.83780 1.02034 1.20581 0.94782 0.96383 1.05216 1.20987 0.93651 0.98296 0.99801 1.20317 1.00778 0.87587 1.01122 1.21031 0.79993 0.94648 1.06656 1.70907 1.28923 0.97882 1.20555 1.21149 0.88670 0.95445 1.05644 1.16956 0.85180 0.83352 0.78039 1.90749 1.32407 1.67440 1.52599 1.46405 1.06837 1.10130 1.69864 1.18830 0.98228 0.72684 0.94171 0.93158 1.22080 0.96809 1.04421 0.97250 1.21240 1.02428 0.92158 1.41136 0.91914 1.24879 0.97137 0.96485 0.95203 1.69903 1.34347 1.01980 1.46054 0.86431 0.83211 0.78140 0.79230 1.20583 1.21113 1.19780 1.22564 1.01394 0.80036 1.12441 1.42743 1.08896 1.05567 1.46453 0.89625 0.89197 0.90399 0.83387 0.84039 0.83030 0.76774 0.96582 0.95353 0.89022 0.92633 0.78994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.84 36.01 0.35 -0.39 16 2 C 0.09 0.86 6.78 -81.63 -0.55 0.30 16 3 C -0.15 -1.12 9.58 -39.90 -0.38 -1.50 16 4 C -0.10 -0.81 10.06 -39.54 -0.40 -1.21 16 5 C -0.08 -0.85 10.11 -39.30 -0.40 -1.24 16 6 C 0.22 3.31 7.79 -156.04 -1.22 2.10 16 7 N -0.46 -8.40 11.01 -9.35 -0.10 -8.50 16 8 C 0.02 0.47 6.94 -83.45 -0.58 -0.11 16 9 C 0.58 13.25 7.79 -12.45 -0.10 13.15 16 10 O -0.55 -13.94 16.53 5.29 0.09 -13.85 16 11 N -0.69 -16.23 5.07 -55.96 -0.28 -16.51 16 12 C 0.26 7.08 2.56 -69.08 -0.18 6.91 16 13 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 14 C -0.15 -3.84 9.26 37.16 0.34 -3.49 16 15 C -0.53 -14.80 8.73 -34.44 -0.30 -15.10 16 16 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 17 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 18 N -0.89 -25.55 11.32 55.43 0.63 -24.93 16 19 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.03 -0.47 10.78 -16.21 -0.17 -0.64 16 24 N -0.36 -4.93 2.93 -58.17 -0.17 -5.10 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.35 8.07 -51.93 -0.42 -0.07 16 27 H 0.08 0.53 7.46 -51.93 -0.39 0.14 16 28 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 30 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.40 8.85 8.24 -40.82 -0.34 8.51 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.19 2.57 7.77 -52.49 -0.41 2.17 16 LS Contribution 313.08 15.07 4.72 4.72 Total: -1.00 -33.70 313.08 -8.15 -41.85 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.34 Total: 5.52 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -3.67 Total: 0.50 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.07 Total: -55.04 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.70 -8.15 -41.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701297760.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.270 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds