Wall clock time and date at job start Mon Mar 30 2020 01:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39551 * 120.51517 * 2 1 4 4 C 1.35692 * 120.13894 * 180.02562 * 3 2 1 5 5 N 1.35521 * 121.22260 * 359.97438 * 4 3 2 6 6 C 1.46503 * 119.47323 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.47032 * 90.00075 * 6 5 4 8 8 C 1.36931 * 120.00285 * 90.00034 * 7 6 5 9 9 H 1.08003 * 120.00188 * 216.79472 * 8 7 6 10 10 C 1.38816 * 120.00104 * 36.79102 * 8 7 6 11 11 N 1.31617 * 119.99816 * 20.33606 * 10 8 7 12 12 Si 1.86798 * 120.00134 * 200.34320 * 10 8 7 13 13 H 1.48497 * 109.47191 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.47078 * 299.99582 * 12 10 8 15 15 H 1.48496 * 109.47195 * 59.99860 * 12 10 8 16 16 C 1.46505 * 119.99908 * 269.99415 * 7 6 5 17 17 C 1.52994 * 117.49722 * 194.09543 * 16 7 6 18 18 C 1.53003 * 117.49664 * 125.43596 * 16 7 6 19 19 C 1.34654 * 121.04848 * 0.25720 * 5 4 3 20 20 O 1.21894 * 120.10536 * 179.74387 * 19 5 4 21 21 C 1.39258 * 120.51830 * 180.02562 * 2 1 3 22 22 C 1.43197 * 120.58352 * 359.97438 * 21 2 1 23 23 N 3.48899 * 81.19806 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47473 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46728 * 120.00328 * 1 2 3 26 26 H 1.09002 * 109.47087 * 239.99986 * 1 2 3 27 27 H 1.08001 * 119.93060 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.38485 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47073 * 329.99696 * 6 5 4 30 30 H 1.09001 * 109.46930 * 210.00060 * 6 5 4 31 31 H 0.97005 * 120.00073 * 176.31332 * 11 10 8 32 32 H 1.08997 * 115.54918 * 339.77305 * 16 7 6 33 33 H 1.08995 * 117.50178 * 0.02562 * 17 16 7 34 34 H 1.09007 * 117.49403 * 145.02296 * 17 16 7 35 35 H 1.08999 * 117.50007 * 214.98135 * 18 16 7 36 36 H 1.08997 * 117.49884 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2022 0.0000 4 6 3.5725 1.1933 -0.0005 5 7 4.2673 0.0298 -0.0005 6 6 5.7320 0.0649 -0.0017 7 7 6.2212 0.0772 1.3791 8 6 6.4783 -1.1025 2.0250 9 1 6.2594 -1.2005 3.0781 10 6 7.0201 -2.1726 1.3262 11 7 7.6508 -1.9649 0.1899 12 14 6.8539 -3.9074 1.9986 13 1 7.5123 -4.8627 1.0718 14 1 7.5015 -3.9854 3.3327 15 1 5.4155 -4.2534 2.1256 16 6 6.4355 1.3518 2.0690 17 6 7.2467 1.3254 3.3659 18 6 5.7339 1.5541 3.4135 19 6 3.6330 -1.1579 -0.0052 20 8 4.2752 -2.1940 -0.0099 21 6 2.2142 -1.1997 -0.0005 22 6 1.5222 -2.4533 -0.0005 23 7 0.9731 -3.4479 -0.0015 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3633 -0.5138 0.8900 27 1 1.6829 2.1417 0.0004 28 1 4.1086 2.1308 -0.0009 29 1 6.0734 0.9631 -0.5162 30 1 6.1161 -0.8163 -0.5154 31 1 8.0757 -2.7050 -0.2714 32 1 6.5468 2.2229 1.4233 33 1 7.6212 0.3599 3.7057 34 1 7.8915 2.1794 3.5737 35 1 5.3839 2.5583 3.6526 36 1 5.1125 0.7390 3.7845 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758198594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:55 Heat of formation + Delta-G solvation = 59.674041 kcal Electronic energy + Delta-G solvation = -21287.581688 eV Core-core repulsion = 18159.466715 eV Total energy + Delta-G solvation = -3128.114973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.09371 -38.81183 -37.92109 -37.69067 -35.93516 -34.83827 -32.33276 -30.92933 -29.82399 -27.32695 -25.25150 -25.10337 -22.91600 -22.44232 -21.65281 -20.19050 -18.70040 -18.45326 -17.49221 -17.09915 -16.72419 -16.20886 -15.99530 -15.62875 -15.08505 -14.82273 -14.46052 -14.32543 -14.01593 -13.99752 -13.67440 -13.53798 -13.18906 -13.05888 -12.89935 -12.84838 -12.53216 -12.46096 -12.39808 -12.14300 -12.03273 -11.54755 -10.96680 -10.80659 -10.53909 -10.43921 -8.79710 -8.65756 -8.04052 -5.56905 -0.36818 1.12006 1.26551 1.34205 1.45254 1.54047 1.92036 2.14706 2.41212 2.95282 3.18865 3.21826 3.46450 3.49585 3.72095 3.92444 4.18448 4.22661 4.34677 4.45851 4.49988 4.57145 4.70142 4.72987 4.98037 5.01420 5.08643 5.17156 5.27590 5.36845 5.39155 5.48365 5.60425 5.62948 5.85893 6.26671 6.41658 6.61689 7.03430 7.33242 7.72086 8.11643 8.97341 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.008710 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.685851 B = 3213.909798 C = 4397.130733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.112 3.888 3 C -0.249 4.249 4 C 0.197 3.803 5 N -0.491 5.491 6 C 0.316 3.684 7 N -0.547 5.547 8 C -0.268 4.268 9 H 0.042 0.958 10 C 0.022 3.978 11 N -0.896 5.896 12 Si 0.929 3.071 13 H -0.292 1.292 14 H -0.271 1.271 15 H -0.308 1.308 16 C 0.102 3.898 17 C -0.197 4.197 18 C -0.201 4.201 19 C 0.521 3.479 20 O -0.579 6.579 21 C -0.254 4.254 22 C 0.303 3.697 23 N -0.496 5.496 24 H 0.123 0.877 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.204 0.796 28 H 0.210 0.790 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.253 0.747 32 H 0.139 0.861 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.575 18.493 -1.360 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.104 3.896 3 C -0.271 4.271 4 C 0.062 3.938 5 N -0.201 5.201 6 C 0.110 3.890 7 N -0.263 5.263 8 C -0.398 4.398 9 H 0.060 0.940 10 C -0.179 4.179 11 N -0.538 5.538 12 Si 0.760 3.240 13 H -0.218 1.218 14 H -0.197 1.197 15 H -0.236 1.236 16 C -0.004 4.004 17 C -0.235 4.235 18 C -0.241 4.241 19 C 0.320 3.680 20 O -0.462 6.462 21 C -0.263 4.263 22 C -0.009 4.009 23 N -0.175 5.175 24 H 0.142 0.858 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.221 0.779 28 H 0.227 0.773 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.156 0.844 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.751 16.106 -1.509 18.888 hybrid contribution 0.440 -1.869 0.569 2.003 sum -9.311 14.237 -0.940 17.037 Atomic orbital electron populations 1.21169 0.87901 1.06540 1.03064 1.20978 0.97807 0.90317 0.80490 1.20973 0.92017 0.98860 1.15210 1.23268 0.94396 0.91139 0.84993 1.47639 1.12207 1.06098 1.54176 1.21976 0.74445 1.05003 0.87608 1.43843 1.69359 1.01185 1.11947 1.18592 1.37097 0.90233 0.93885 0.94030 1.25168 0.95636 0.99958 0.97123 1.69748 1.34724 1.31144 1.18201 0.85974 0.76424 0.83615 0.77975 1.21816 1.19672 1.23601 1.21663 1.01887 0.89079 0.87813 1.23073 0.94370 1.01841 1.04255 1.23307 0.94089 1.01683 1.05013 1.17055 0.87851 0.84248 0.78799 1.90957 1.68938 1.33331 1.52989 1.16902 0.91416 0.88385 1.29560 1.25389 0.91701 0.92423 0.91342 1.81080 1.11970 1.10509 1.13899 0.85840 0.90202 0.90725 0.77901 0.77302 0.86972 0.88372 0.93747 0.84414 0.92034 0.87224 0.86297 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.21 71.24 0.66 -1.35 16 2 C 0.11 2.54 5.96 -19.30 -0.12 2.42 16 3 C -0.25 -3.76 9.64 22.00 0.21 -3.55 16 4 C 0.20 3.82 10.25 83.53 0.86 4.68 16 5 N -0.49 -16.76 2.82 -660.67 -1.86 -18.62 16 6 C 0.32 12.46 5.51 170.96 0.94 13.41 16 7 N -0.55 -23.58 3.03 -689.69 -2.09 -25.67 16 8 C -0.27 -14.35 7.95 84.04 0.67 -13.69 16 9 H 0.04 2.36 7.16 -2.91 -0.02 2.34 16 10 C 0.02 1.24 4.15 84.86 0.35 1.59 16 11 N -0.90 -51.64 11.34 21.65 0.25 -51.40 16 12 Si 0.93 50.63 29.60 68.60 2.03 52.66 16 13 H -0.29 -15.85 7.11 99.48 0.71 -15.14 16 14 H -0.27 -13.84 7.11 99.48 0.71 -13.14 16 15 H -0.31 -18.38 7.11 99.48 0.71 -17.67 16 16 C 0.10 3.33 6.61 44.99 0.30 3.63 16 17 C -0.20 -6.55 9.81 30.62 0.30 -6.25 16 18 C -0.20 -6.01 10.08 30.62 0.31 -5.70 16 19 C 0.52 22.64 7.43 85.18 0.63 23.28 16 20 O -0.58 -32.66 15.11 -4.97 -0.08 -32.73 16 21 C -0.25 -9.17 5.79 -20.87 -0.12 -9.29 16 22 C 0.30 12.62 14.05 88.33 1.24 13.87 16 23 N -0.50 -22.12 18.54 19.00 0.35 -21.77 16 24 H 0.12 0.82 7.93 -2.39 -0.02 0.80 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.20 0.86 7.99 -2.91 -0.02 0.83 16 28 H 0.21 1.89 8.02 -2.91 -0.02 1.87 16 29 H 0.11 3.33 7.89 -2.39 -0.02 3.31 16 30 H 0.10 5.02 4.64 -2.39 -0.01 5.01 16 31 H 0.25 14.61 8.32 -92.70 -0.77 13.84 16 32 H 0.14 3.25 8.10 -2.39 -0.02 3.23 16 33 H 0.06 2.55 6.93 -2.39 -0.02 2.54 16 34 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 35 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.05 1.94 8.01 -2.39 -0.02 1.92 16 Total: -1.00 -82.66 315.77 5.94 -76.72 By element: Atomic # 1 Polarization: -3.33 SS G_CDS: 1.10 Total: -2.23 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 6.23 Total: 23.04 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -3.35 Total: -117.45 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.08 Total: -32.73 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.03 Total: 52.66 kcal Total: -82.66 5.94 -76.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758198594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.395 kcal (2) G-P(sol) polarization free energy of solvation -82.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds