Wall clock time and date at job start Mon Mar 30 2020 01:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30184 * 125.09237 * 2 1 4 4 C 1.34885 * 109.73573 * 180.02562 * 3 2 1 5 5 C 1.46285 * 126.49592 * 179.97438 * 4 3 2 6 6 O 1.21772 * 119.99961 * 179.97438 * 5 4 3 7 7 N 1.34778 * 120.00081 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99840 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46658 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46584 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00422 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99713 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99884 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99930 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47091 * 59.99846 * 14 12 10 16 16 H 1.48494 * 109.46804 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46998 * 300.00119 * 14 12 10 18 18 C 1.40144 * 107.00425 * 359.97438 * 4 3 2 19 19 C 1.40185 * 133.57936 * 179.97438 * 18 4 3 20 20 C 1.36331 * 119.19883 * 180.02562 * 19 18 4 21 21 C 1.40382 * 119.56340 * 0.02562 * 20 19 18 22 22 C 1.35032 * 120.43992 * 359.97438 * 21 20 19 23 23 N 1.36250 * 125.08819 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47162 * 269.96244 * 1 2 3 25 25 H 1.09007 * 109.46935 * 29.96357 * 1 2 3 26 26 H 1.08993 * 109.47416 * 149.96302 * 1 2 3 27 27 H 0.96998 * 119.99996 * 359.97438 * 7 5 4 28 28 H 1.08999 * 109.47347 * 299.99951 * 8 7 5 29 29 H 1.08995 * 109.47282 * 60.00128 * 8 7 5 30 30 H 1.09000 * 109.47003 * 299.99129 * 9 8 7 31 31 H 1.08992 * 109.47449 * 60.00502 * 9 8 7 32 32 H 0.96998 * 119.99924 * 180.02562 * 13 12 10 33 33 H 1.08006 * 120.39766 * 359.75091 * 19 18 4 34 34 H 1.08003 * 120.21416 * 180.02562 * 20 19 18 35 35 H 1.08006 * 119.78198 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.70009 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7080 -0.0006 5 6 4.7065 1.6116 -0.0013 6 8 5.8368 1.1583 -0.0013 7 7 4.5156 2.9458 -0.0009 8 6 5.6677 3.8506 -0.0010 9 6 5.1777 5.3001 -0.0012 10 6 6.3629 6.2309 -0.0020 11 1 7.3653 5.8289 -0.0019 12 6 6.1675 7.5958 -0.0028 13 7 4.9469 8.0853 -0.0023 14 14 7.6366 8.7496 -0.0030 15 1 8.4586 8.5042 -1.2152 16 1 7.1610 10.1564 -0.0033 17 1 8.4579 8.5055 1.2098 18 6 3.5964 -0.6929 -0.0003 19 6 4.6393 -1.6296 -0.0011 20 6 4.3388 -2.9594 -0.0011 21 6 2.9951 -3.3659 -0.0009 22 6 2.0032 -2.4497 -0.0001 23 7 2.2902 -1.1149 -0.0005 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8904 -0.5133 26 1 -0.3634 -0.8896 -0.5144 27 1 3.6153 3.3068 -0.0005 28 1 6.2711 3.6708 0.8887 29 1 6.2705 3.6712 -0.8912 30 1 4.5747 5.4796 -0.8912 31 1 4.5747 5.4799 0.8888 32 1 4.8094 9.0455 -0.0033 33 1 5.6684 -1.3018 -0.0062 34 1 5.1294 -3.6953 -0.0013 35 1 2.7531 -4.4185 -0.0013 36 1 0.9736 -2.7757 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784134474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:34 Heat of formation + Delta-G solvation = 35.553722 kcal Electronic energy + Delta-G solvation = -19736.186674 eV Core-core repulsion = 16607.025765 eV Total energy + Delta-G solvation = -3129.160908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.00360 -38.85339 -37.64136 -34.73696 -33.71307 -32.73022 -31.76718 -30.44512 -29.46790 -27.06544 -24.94853 -24.07000 -23.17483 -21.34026 -20.83148 -20.00292 -17.85053 -17.07065 -16.36796 -16.36005 -16.18528 -15.73809 -14.94376 -14.69979 -14.61333 -14.39020 -13.79848 -13.42895 -13.10140 -12.96528 -12.82188 -12.45846 -12.21789 -11.91409 -11.84539 -11.12143 -10.96823 -10.80050 -10.61716 -10.54426 -10.21282 -9.82045 -9.55916 -9.42219 -9.16155 -8.44732 -8.26136 -7.57569 -6.01246 -4.03991 0.45745 0.89100 2.26328 2.35713 3.07437 3.36501 3.39880 3.43069 3.77186 3.87410 4.09137 4.20847 4.39339 4.48437 4.54146 4.72579 4.81694 5.09866 5.22749 5.24818 5.35308 5.41659 5.55585 5.60338 5.82108 6.00339 6.23884 6.31792 6.45926 6.47988 6.84522 6.89864 7.06055 7.54965 7.64939 7.73253 7.97561 8.21724 8.37292 8.78607 9.02012 9.60056 11.10406 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.003377 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.306325 B = 8290.386271 C = 9067.944821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.164 3.836 3 N -0.413 5.413 4 C -0.047 4.047 5 C 0.595 3.405 6 O -0.556 6.556 7 N -0.705 5.705 8 C 0.122 3.878 9 C 0.012 3.988 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.068 3.932 19 C -0.061 4.061 20 C -0.123 4.123 21 C -0.131 4.131 22 C 0.046 3.954 23 N -0.363 5.363 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.405 0.595 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.262 0.738 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 -24.487 -0.015 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.093 4.093 3 N -0.128 5.128 4 C -0.182 4.182 5 C 0.381 3.619 6 O -0.436 6.436 7 N -0.353 5.353 8 C 0.000 4.000 9 C -0.025 4.025 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.044 4.044 19 C -0.080 4.080 20 C -0.144 4.144 21 C -0.152 4.152 22 C -0.076 4.076 23 N -0.034 5.034 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.240 0.760 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.178 0.822 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.936 -23.712 -0.016 25.709 hybrid contribution 0.491 0.011 0.006 0.491 sum -9.445 -23.701 -0.010 25.514 Atomic orbital electron populations 1.20184 0.83910 1.04271 1.03699 1.23362 0.95695 0.78868 1.11332 1.70065 1.01565 1.27386 1.13822 1.20748 0.91663 0.89740 1.16027 1.16529 0.86154 0.82167 0.77064 1.90765 1.23169 1.77008 1.52656 1.46116 1.11855 1.05088 1.72278 1.21754 0.86718 0.90695 1.00811 1.19324 0.97415 0.87791 0.97994 1.21029 0.92699 0.90918 1.51327 0.92280 1.25001 0.95885 0.98345 0.95085 1.69955 1.20110 1.12853 1.50370 0.86574 0.82659 0.79563 0.78735 1.20133 1.21291 1.20139 1.19289 0.83959 0.94379 1.06780 1.20863 0.99297 0.91159 0.96723 1.21195 0.96541 0.95903 1.00809 1.20887 0.92369 0.99856 1.02118 1.21623 1.01422 0.80375 1.04133 1.42849 1.07938 1.06425 1.46226 0.90036 0.88566 0.90915 0.75999 0.92439 0.92442 0.95849 0.95849 0.92839 0.82192 0.84157 0.83280 0.81679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.32 36.01 0.37 -0.10 16 2 C 0.16 2.06 7.94 -154.56 -1.23 0.83 16 3 N -0.41 -6.70 10.90 -6.74 -0.07 -6.77 16 4 C -0.05 -0.82 7.05 -82.58 -0.58 -1.40 16 5 C 0.60 12.04 7.77 -13.03 -0.10 11.94 16 6 O -0.56 -12.23 15.75 5.12 0.08 -12.15 16 7 N -0.70 -14.53 5.55 -61.73 -0.34 -14.87 16 8 C 0.12 2.81 5.61 -4.04 -0.02 2.79 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 11 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 14 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.07 1.01 6.72 -83.99 -0.56 0.44 16 19 C -0.06 -0.76 9.73 -39.54 -0.38 -1.14 16 20 C -0.12 -1.06 10.08 -39.46 -0.40 -1.46 16 21 C -0.13 -0.89 9.98 -39.91 -0.40 -1.29 16 22 C 0.05 0.36 10.77 -16.60 -0.18 0.18 16 23 N -0.36 -4.32 2.94 -57.93 -0.17 -4.49 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.35 7.99 -51.93 -0.41 -0.06 16 27 H 0.41 7.93 8.17 -40.82 -0.33 7.60 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.16 2.10 7.17 -52.48 -0.38 1.73 16 34 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 35 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 36 H 0.17 0.63 7.94 -52.49 -0.42 0.21 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -35.02 317.22 -8.51 -43.54 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.47 Total: 1.99 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -4.04 Total: -2.71 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.15 Total: -52.33 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.02 -8.51 -43.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784134474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.089 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds